Wall clock time and date at job start Tue Mar 31 2020 01:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 11 11 C 1.53192 * 108.89269 * 233.51528 * 10 9 7 12 12 C 1.53065 * 109.29648 * 305.57538 * 11 10 9 13 13 N 1.46503 * 109.44591 * 181.23295 * 12 11 10 14 14 C 1.34775 * 119.99376 * 84.79556 * 13 12 11 15 15 O 1.21277 * 120.00698 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99899 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.47263 * 180.02562 * 16 14 13 18 18 F 1.39895 * 109.46889 * 60.00263 * 17 16 14 19 19 F 1.39901 * 109.47003 * 180.02562 * 17 16 14 20 20 F 1.39902 * 109.46739 * 300.00080 * 17 16 14 21 21 C 1.53049 * 109.65631 * 61.15762 * 12 11 10 22 22 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 23 23 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.58836 * 353.37398 * 10 9 7 25 25 H 1.08998 * 109.58900 * 113.65916 * 10 9 7 26 26 H 1.09005 * 109.49756 * 65.39178 * 11 10 9 27 27 H 1.09004 * 109.49788 * 185.48181 * 11 10 9 28 28 H 1.08996 * 109.35399 * 301.12990 * 12 11 10 29 29 H 0.96995 * 120.00576 * 264.80141 * 13 12 11 30 30 H 1.09003 * 109.47238 * 300.00196 * 16 14 13 31 31 H 1.09000 * 109.46867 * 60.00149 * 16 14 13 32 32 H 1.09002 * 109.49883 * 178.75013 * 21 12 11 33 33 H 1.08997 * 109.52642 * 58.66321 * 21 12 11 34 34 H 1.09007 * 109.58325 * 246.20224 * 22 9 7 35 35 H 1.08996 * 109.58499 * 6.48109 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2679 11 6 0.4941 -3.3198 2.4146 12 6 0.8120 -4.7008 1.8361 13 7 1.0399 -5.6475 2.9307 14 6 -0.0049 -6.2695 3.5120 15 8 -1.1336 -6.0459 3.1288 16 6 0.2293 -7.2429 4.6384 17 6 -1.1121 -7.8036 5.1152 18 9 -1.7460 -8.4607 4.0552 19 9 -0.8947 -8.7068 6.1612 20 9 -1.9220 -6.7555 5.5654 21 6 2.0675 -4.6174 0.9647 22 6 1.8138 -3.6528 -0.1981 23 1 -0.4850 0.8400 -0.0004 24 1 0.0994 -1.3343 1.6687 25 1 -0.6774 -2.6381 0.7363 26 1 1.3429 -2.9692 3.0020 27 1 -0.3880 -3.3841 3.0518 28 1 -0.0282 -5.0410 1.2308 29 1 1.9426 -5.8266 3.2371 30 1 0.8600 -8.0597 4.2875 31 1 0.7236 -6.7310 5.4641 32 1 2.3042 -5.6063 0.5721 33 1 2.9028 -4.2540 1.5632 34 1 1.0401 -4.0604 -0.8488 35 1 2.7331 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110823841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:51 Heat of formation + Delta-G solvation = -199.673603 kcal Electronic energy + Delta-G solvation = -22482.398634 eV Core-core repulsion = 18485.694571 eV Total energy + Delta-G solvation = -3996.704063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.05240 -48.57467 -48.52710 -41.03567 -38.98677 -36.06394 -34.07975 -32.89868 -31.67502 -30.98795 -27.06180 -25.21190 -23.92293 -23.50719 -21.62627 -21.01401 -19.69408 -19.52258 -18.89944 -18.42342 -17.62644 -17.05848 -16.55462 -16.41749 -15.62985 -15.43667 -15.35419 -15.31836 -14.94152 -14.90549 -14.70674 -14.66636 -14.59943 -14.39983 -14.08667 -13.39301 -13.22354 -13.04331 -12.91457 -12.66499 -12.54225 -12.12591 -12.07174 -11.85449 -11.54481 -11.42347 -11.03659 -10.58219 -10.05894 -8.71115 -7.87545 -5.34081 1.47789 1.48803 1.49644 1.58462 1.59417 2.11906 2.52067 2.75815 3.09615 3.16900 3.29496 3.65663 3.78539 3.90772 4.06424 4.22127 4.29764 4.33819 4.48098 4.67222 4.80485 4.86698 5.04891 5.08281 5.14083 5.32887 5.46565 5.49892 5.64490 5.70125 6.38607 6.47757 7.13539 7.18540 7.84757 8.37025 9.19505 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.039282 B = 0.003621 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.617229 B = 7731.835681 C = 7991.992058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.054 4.054 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.263 4.263 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.181 3.819 11 C -0.131 4.131 12 C 0.161 3.839 13 N -0.700 5.700 14 C 0.507 3.493 15 O -0.576 6.576 16 C -0.179 4.179 17 C 0.464 3.536 18 F -0.191 7.191 19 F -0.178 7.178 20 F -0.193 7.193 21 C -0.120 4.120 22 C 0.139 3.861 23 H 0.249 0.751 24 H 0.054 0.946 25 H -0.014 1.014 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.421 0.579 30 H 0.181 0.819 31 H 0.175 0.825 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.009 0.991 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.374 -17.554 11.524 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.393 4.393 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.055 3.945 11 C -0.171 4.171 12 C 0.056 3.944 13 N -0.351 5.351 14 C 0.293 3.707 15 O -0.455 6.455 16 C -0.219 4.219 17 C 0.409 3.591 18 F -0.172 7.172 19 F -0.159 7.159 20 F -0.174 7.174 21 C -0.159 4.159 22 C 0.013 3.987 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.004 0.996 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.260 0.740 30 H 0.198 0.802 31 H 0.193 0.807 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.027 0.973 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.474 -17.285 11.245 21.335 hybrid contribution -0.224 1.096 -0.073 1.122 sum 5.249 -16.188 11.172 20.358 Atomic orbital electron populations 1.70211 1.06978 1.25868 1.55500 1.25874 0.95941 1.01821 1.01228 0.85263 0.78165 0.79360 0.77570 1.21164 1.22294 1.18973 1.19580 0.93067 0.85815 1.40833 0.90760 1.44353 1.35667 1.02720 1.50578 1.20461 0.87775 0.97393 0.88911 1.22307 1.00478 0.95851 0.98474 1.20690 0.98729 0.87518 0.87464 1.45841 1.10085 1.43178 1.36043 1.20520 0.84985 0.81499 0.83656 1.90840 1.24438 1.65384 1.64835 1.23043 0.94500 1.03112 1.01216 1.20227 0.88118 0.75729 0.75015 1.93191 1.84768 1.81957 1.57314 1.93204 1.94790 1.68821 1.59100 1.93198 1.76556 1.58141 1.89547 1.22123 0.96117 1.00474 0.97220 1.21068 0.97844 0.85659 0.94121 0.94217 0.92800 0.99578 0.91605 0.93608 0.92524 0.74035 0.80203 0.80705 0.88713 0.90240 0.97289 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.61 11.20 21.65 0.24 -56.37 16 2 C -0.05 -2.98 4.92 84.86 0.42 -2.57 16 3 Si 0.97 44.39 29.59 68.60 2.03 46.42 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.26 -14.15 9.58 84.03 0.81 -13.35 16 8 H 0.07 3.80 7.89 -2.91 -0.02 3.77 16 9 N -0.61 -30.06 3.00 -699.10 -2.09 -32.15 16 10 C 0.18 9.01 5.30 86.36 0.46 9.47 16 11 C -0.13 -5.00 5.66 30.68 0.17 -4.83 16 12 C 0.16 4.97 2.41 45.03 0.11 5.08 16 13 N -0.70 -14.58 5.08 -442.35 -2.25 -16.83 16 14 C 0.51 11.89 7.56 87.66 0.66 12.55 16 15 O -0.58 -20.47 14.50 -3.02 -0.04 -20.51 16 16 C -0.18 -2.16 5.75 29.85 0.17 -1.99 16 17 C 0.46 9.29 2.89 71.98 0.21 9.50 16 18 F -0.19 -4.86 16.40 44.97 0.74 -4.12 16 19 F -0.18 -3.05 17.32 44.97 0.78 -2.27 16 20 F -0.19 -5.12 16.40 44.97 0.74 -4.39 16 21 C -0.12 -3.33 5.55 30.67 0.17 -3.16 16 22 C 0.14 5.37 6.52 86.36 0.56 5.93 16 23 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.05 3.04 6.06 -2.39 -0.01 3.03 16 25 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 27 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.06 2.11 7.58 -2.39 -0.02 2.09 16 29 H 0.42 4.93 8.60 -92.71 -0.80 4.13 16 30 H 0.18 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.18 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 35 H 0.07 2.49 7.93 -2.39 -0.02 2.47 16 Total: -1.00 -75.28 302.43 4.20 -71.07 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 0.32 Total: 2.50 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 3.74 Total: 16.64 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.10 Total: -105.35 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.04 Total: -20.51 kcal Atomic # 9 Polarization: -13.03 SS G_CDS: 2.25 Total: -10.78 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -75.28 4.20 -71.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.600 kcal (2) G-P(sol) polarization free energy of solvation -75.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds