Wall clock time and date at job start Tue Mar 31 2020 01:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86802 * 120.00100 * 2 1 4 4 H 1.48502 * 109.46769 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46991 * 299.99867 * 3 2 1 6 6 H 1.48495 * 109.47029 * 60.00204 * 3 2 1 7 7 C 1.39898 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99765 * 175.55853 * 7 2 1 9 9 C 1.41152 * 120.00147 * 355.55491 * 7 2 1 10 10 C 1.40874 * 120.16364 * 214.78564 * 9 7 2 11 11 C 1.36374 * 119.82356 * 180.02562 * 10 9 7 12 12 C 1.39469 * 120.17464 * 359.97438 * 11 10 9 13 13 N 1.39245 * 119.83707 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00190 * 144.76974 * 13 12 11 15 15 O 1.21587 * 119.99770 * 4.03659 * 14 13 12 16 16 N 1.34771 * 119.99973 * 184.03023 * 14 13 12 17 17 C 1.46505 * 119.99774 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46930 * 180.02562 * 17 16 14 19 19 H 1.08992 * 109.46871 * 60.00412 * 18 17 16 20 20 O 1.42896 * 109.46957 * 300.00275 * 18 17 16 21 21 C 1.53004 * 109.46898 * 180.02562 * 18 17 16 22 22 O 1.42899 * 109.47010 * 185.00066 * 21 18 17 23 23 C 1.39488 * 120.33458 * 0.28331 * 12 11 10 24 24 C 1.36378 * 120.15999 * 359.43772 * 23 12 11 25 25 H 0.97000 * 119.99864 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.08462 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.90729 * 179.97438 * 11 10 9 28 28 H 0.97001 * 119.99748 * 324.49897 * 13 12 11 29 29 H 0.96996 * 120.00252 * 0.02562 * 16 14 13 30 30 H 1.08997 * 109.47061 * 300.00368 * 17 16 14 31 31 H 1.09005 * 109.46705 * 60.00672 * 17 16 14 32 32 H 0.96698 * 114.00410 * 299.99427 * 20 18 17 33 33 H 1.08995 * 109.46844 * 305.00368 * 21 18 17 34 34 H 1.09003 * 109.46514 * 65.00413 * 21 18 17 35 35 H 0.96702 * 113.99741 * 180.02562 * 22 21 18 36 36 H 1.07995 * 119.91880 * 179.70391 * 23 12 11 37 37 H 1.08003 * 120.08163 * 180.27525 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3964 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0859 -1.2130 -0.0730 9 6 1.3057 -2.4322 0.0937 10 6 1.8649 -3.5186 0.7947 11 6 1.1803 -4.6949 0.8809 12 6 -0.0706 -4.8237 0.2778 13 7 -0.7638 -6.0278 0.3707 14 6 -2.1079 -6.0257 0.4701 15 8 -2.7207 -4.9775 0.4050 16 7 -2.7727 -7.1854 0.6417 17 6 -4.2337 -7.1830 0.7504 18 6 -4.7334 -8.6168 0.9391 19 1 -4.3022 -9.0351 1.8485 20 8 -4.3405 -9.4097 -0.1829 21 6 -6.2593 -8.6144 1.0520 22 8 -6.7174 -9.9361 1.3442 23 6 -0.6286 -3.7542 -0.4226 24 6 0.0416 -2.5699 -0.5126 25 1 -0.4850 0.8401 0.0004 26 1 2.8337 -3.4204 1.2619 27 1 1.6080 -5.5288 1.4177 28 1 -0.2796 -6.8682 0.3598 29 1 -2.2839 -8.0216 0.6940 30 1 -4.5334 -6.5785 1.6064 31 1 -4.6650 -6.7643 -0.1590 32 1 -4.6890 -9.0952 -1.0282 33 1 -6.5633 -7.9393 1.8518 34 1 -6.6927 -8.2797 0.1095 35 1 -7.6778 -10.0095 1.4295 36 1 -1.5955 -3.8629 -0.8911 37 1 -0.3935 -1.7412 -1.0515 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119743644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:54 Heat of formation + Delta-G solvation = -105.911600 kcal Electronic energy + Delta-G solvation = -20932.630176 eV Core-core repulsion = 17481.848678 eV Total energy + Delta-G solvation = -3450.781497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98417 -38.61117 -37.34252 -36.24961 -34.50295 -34.06003 -32.81973 -30.54798 -29.43361 -28.75518 -25.93959 -24.45418 -22.16610 -21.47229 -21.00305 -19.95269 -18.15577 -17.71959 -17.24431 -17.11075 -16.61275 -16.21513 -15.23006 -15.04331 -14.68630 -14.23459 -13.97534 -13.88073 -13.73308 -13.08750 -13.01656 -12.68024 -12.46039 -12.04460 -11.68554 -11.41295 -11.22026 -11.14051 -10.86977 -10.58840 -10.46464 -10.40882 -9.94894 -9.84391 -9.57328 -9.09229 -8.91228 -8.71208 -7.46500 -6.81891 -6.54441 -4.28000 2.69542 2.90866 3.09546 3.13629 3.16688 3.20817 3.69632 3.76660 4.02657 4.07167 4.50038 4.60586 4.75272 4.77231 4.80273 5.02950 5.09811 5.50968 5.69667 5.72294 6.18311 6.41071 6.54191 6.84881 6.88144 7.09784 7.16302 7.20144 7.29247 7.33419 7.43440 7.70291 7.88232 8.06885 8.14800 8.34901 8.50948 8.73082 8.98166 8.98960 9.13994 10.36611 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042357 B = 0.002927 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.887209 B = 9565.411469 C =10037.162981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.068 3.932 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.075 0.925 9 C 0.097 3.903 10 C -0.203 4.203 11 C -0.116 4.116 12 C 0.025 3.975 13 N -0.667 5.667 14 C 0.694 3.306 15 O -0.576 6.576 16 N -0.747 5.747 17 C 0.112 3.888 18 C 0.097 3.903 19 H 0.112 0.888 20 O -0.551 6.551 21 C 0.047 3.953 22 O -0.565 6.565 23 C -0.094 4.094 24 C -0.143 4.143 25 H 0.277 0.723 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.392 0.608 29 H 0.397 0.603 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.376 0.624 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.380 0.620 36 H 0.108 0.892 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.058 -14.357 0.807 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.223 4.223 11 C -0.137 4.137 12 C -0.068 4.068 13 N -0.313 5.313 14 C 0.395 3.605 15 O -0.453 6.453 16 N -0.405 5.405 17 C -0.013 4.013 18 C 0.037 3.963 19 H 0.129 0.871 20 O -0.356 6.356 21 C -0.032 4.032 22 O -0.370 6.370 23 C -0.114 4.114 24 C -0.163 4.163 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.225 0.775 29 H 0.231 0.769 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.224 0.776 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.227 0.773 36 H 0.126 0.874 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.890 -13.673 1.201 16.918 hybrid contribution -0.217 0.493 -0.135 0.555 sum -10.107 -13.180 1.066 16.643 Atomic orbital electron populations 1.69809 1.07215 1.28524 1.38093 1.25889 0.94924 1.01124 0.92732 0.86166 0.80508 0.81024 0.78348 1.18657 1.20044 1.20064 1.19495 0.94632 0.90214 1.45094 0.90657 1.17727 0.92296 0.91900 0.88584 1.20679 1.01110 0.94588 1.05945 1.20052 0.95133 0.97543 1.00945 1.17089 0.94613 0.86433 1.08641 1.42088 1.04351 1.08491 1.76401 1.16002 0.82260 0.83696 0.78547 1.90940 1.67177 1.29994 1.57156 1.44883 1.06523 1.08441 1.80658 1.21637 0.80785 0.95841 1.03073 1.22157 0.92446 0.90370 0.91286 0.87064 1.86619 1.76363 1.55335 1.17268 1.22786 0.95265 0.84839 1.00289 1.86529 1.27427 1.28685 1.94355 1.20666 0.99047 0.93303 0.98428 1.21307 0.96957 0.96000 1.02036 0.91226 0.88547 0.89200 0.77542 0.76857 0.90596 0.91246 0.77631 0.92177 0.92819 0.77270 0.87437 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.90 10.59 55.55 0.59 -21.31 16 2 C 0.07 1.77 5.42 -17.33 -0.09 1.68 16 3 Si 0.91 19.37 29.56 -169.99 -5.03 14.35 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.46 -12.53 9.02 -37.86 -0.34 -12.88 16 8 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 9 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 10 C -0.20 -4.98 9.74 -39.26 -0.38 -5.37 16 11 C -0.12 -2.58 9.90 -39.79 -0.39 -2.97 16 12 C 0.02 0.56 6.30 -83.57 -0.53 0.04 16 13 N -0.67 -12.01 5.31 -14.10 -0.07 -12.09 16 14 C 0.69 12.63 8.39 -86.92 -0.73 11.90 16 15 O -0.58 -13.14 13.78 5.29 0.07 -13.07 16 16 N -0.75 -9.56 5.45 -65.22 -0.36 -9.91 16 17 C 0.11 1.19 5.34 -4.04 -0.02 1.17 16 18 C 0.10 0.83 3.34 -26.73 -0.09 0.74 16 19 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 20 O -0.55 -5.16 13.05 -40.10 -0.52 -5.68 16 21 C 0.05 0.32 6.68 37.16 0.25 0.57 16 22 O -0.56 -4.50 13.62 -40.10 -0.55 -5.04 16 23 C -0.09 -2.40 8.61 -39.79 -0.34 -2.74 16 24 C -0.14 -3.90 8.61 -39.26 -0.34 -4.24 16 25 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 26 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 27 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 28 H 0.39 5.48 8.83 -40.82 -0.36 5.12 16 29 H 0.40 4.17 8.37 -40.82 -0.34 3.82 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.38 2.41 9.04 45.56 0.41 2.82 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.38 1.25 9.12 45.56 0.42 1.67 16 36 H 0.11 2.76 6.24 -52.49 -0.33 2.44 16 37 H 0.13 3.71 6.13 -52.48 -0.32 3.39 16 LS Contribution 320.30 15.07 4.83 4.83 Total: -1.00 -34.57 320.30 -7.67 -42.24 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -3.03 Total: 15.74 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.60 Total: -10.04 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.16 Total: -43.32 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -1.00 Total: -23.79 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.57 -7.67 -42.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119743644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.675 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds