Wall clock time and date at job start Tue Mar 31 2020 01:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86802 * 120.00100 * 2 1 4 4 H 1.48502 * 109.46769 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46991 * 299.99867 * 3 2 1 6 6 H 1.48495 * 109.47029 * 60.00204 * 3 2 1 7 7 C 1.39898 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99765 * 175.55853 * 7 2 1 9 9 C 1.41152 * 120.00147 * 355.55491 * 7 2 1 10 10 C 1.40874 * 120.16364 * 214.78564 * 9 7 2 11 11 C 1.36374 * 119.82356 * 180.02562 * 10 9 7 12 12 C 1.39469 * 120.17464 * 359.97438 * 11 10 9 13 13 N 1.39245 * 119.83707 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00190 * 144.76974 * 13 12 11 15 15 O 1.21587 * 119.99770 * 4.03659 * 14 13 12 16 16 N 1.34771 * 119.99973 * 184.03023 * 14 13 12 17 17 C 1.46505 * 119.99774 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46930 * 180.02562 * 17 16 14 19 19 H 1.08992 * 109.46871 * 60.00412 * 18 17 16 20 20 O 1.42896 * 109.46957 * 300.00275 * 18 17 16 21 21 C 1.53004 * 109.46898 * 180.02562 * 18 17 16 22 22 O 1.42899 * 109.47010 * 185.00066 * 21 18 17 23 23 C 1.39488 * 120.33458 * 0.28331 * 12 11 10 24 24 C 1.36378 * 120.15999 * 359.43772 * 23 12 11 25 25 H 0.97000 * 119.99864 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.08462 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.90729 * 179.97438 * 11 10 9 28 28 H 0.97001 * 119.99748 * 324.49897 * 13 12 11 29 29 H 0.96996 * 120.00252 * 0.02562 * 16 14 13 30 30 H 1.08997 * 109.47061 * 300.00368 * 17 16 14 31 31 H 1.09005 * 109.46705 * 60.00672 * 17 16 14 32 32 H 0.96698 * 114.00410 * 299.99427 * 20 18 17 33 33 H 1.08995 * 109.46844 * 305.00368 * 21 18 17 34 34 H 1.09003 * 109.46514 * 65.00413 * 21 18 17 35 35 H 0.96702 * 113.99741 * 180.02562 * 22 21 18 36 36 H 1.07995 * 119.91880 * 179.70391 * 23 12 11 37 37 H 1.08003 * 120.08163 * 180.27525 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3964 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0859 -1.2130 -0.0730 9 6 1.3057 -2.4322 0.0937 10 6 1.8649 -3.5186 0.7947 11 6 1.1803 -4.6949 0.8809 12 6 -0.0706 -4.8237 0.2778 13 7 -0.7638 -6.0278 0.3707 14 6 -2.1079 -6.0257 0.4701 15 8 -2.7207 -4.9775 0.4050 16 7 -2.7727 -7.1854 0.6417 17 6 -4.2337 -7.1830 0.7504 18 6 -4.7334 -8.6168 0.9391 19 1 -4.3022 -9.0351 1.8485 20 8 -4.3405 -9.4097 -0.1829 21 6 -6.2593 -8.6144 1.0520 22 8 -6.7174 -9.9361 1.3442 23 6 -0.6286 -3.7542 -0.4226 24 6 0.0416 -2.5699 -0.5126 25 1 -0.4850 0.8401 0.0004 26 1 2.8337 -3.4204 1.2619 27 1 1.6080 -5.5288 1.4177 28 1 -0.2796 -6.8682 0.3598 29 1 -2.2839 -8.0216 0.6940 30 1 -4.5334 -6.5785 1.6064 31 1 -4.6650 -6.7643 -0.1590 32 1 -4.6890 -9.0952 -1.0282 33 1 -6.5633 -7.9393 1.8518 34 1 -6.6927 -8.2797 0.1095 35 1 -7.6778 -10.0095 1.4295 36 1 -1.5955 -3.8629 -0.8911 37 1 -0.3935 -1.7412 -1.0515 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119743644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:53 Heat of formation + Delta-G solvation = -135.849098 kcal Electronic energy + Delta-G solvation = -20933.928363 eV Core-core repulsion = 17481.848678 eV Total energy + Delta-G solvation = -3452.079685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44188 -39.59290 -38.91157 -36.92853 -36.16978 -35.32878 -34.59485 -31.59885 -31.31663 -30.44505 -27.21773 -25.92776 -23.29113 -22.91363 -22.72193 -21.54220 -19.41784 -19.20096 -18.70819 -18.02203 -17.49456 -17.31120 -16.99213 -16.33594 -16.01399 -15.71046 -15.34752 -14.89523 -14.82042 -14.55663 -14.45751 -13.93473 -13.72105 -13.64723 -13.37590 -13.29149 -12.84855 -12.61653 -12.30317 -11.90296 -11.78400 -11.67030 -11.36233 -11.16884 -10.98516 -10.91852 -10.53895 -10.13034 -9.41936 -8.68831 -8.46958 -6.29743 0.87814 1.16041 1.39957 1.47208 1.56058 1.69924 2.19028 2.26048 2.84761 3.03743 3.39952 3.49096 3.72257 3.91560 4.03288 4.19276 4.40334 4.46157 4.51076 4.54921 4.65594 4.99459 5.02446 5.13748 5.18672 5.36200 5.41628 5.46141 5.72285 5.81701 6.11520 6.17603 6.20079 6.40246 6.72348 6.74346 6.86956 6.99189 7.05814 7.14496 7.65502 8.46207 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042357 B = 0.002927 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.887209 B = 9565.411469 C =10037.162981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.021 3.979 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.496 4.496 8 H 0.079 0.921 9 C 0.063 3.937 10 C -0.209 4.209 11 C -0.110 4.110 12 C 0.040 3.960 13 N -0.658 5.658 14 C 0.692 3.308 15 O -0.625 6.625 16 N -0.724 5.724 17 C 0.111 3.889 18 C 0.108 3.892 19 H 0.108 0.892 20 O -0.565 6.565 21 C 0.048 3.952 22 O -0.587 6.587 23 C -0.108 4.108 24 C -0.167 4.167 25 H 0.281 0.719 26 H 0.113 0.887 27 H 0.136 0.864 28 H 0.415 0.585 29 H 0.413 0.587 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.388 0.612 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.399 0.601 36 H 0.097 0.903 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 -16.032 1.596 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.190 4.190 3 Si 0.812 3.188 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.527 4.527 8 H 0.097 0.903 9 C 0.060 3.940 10 C -0.228 4.228 11 C -0.130 4.130 12 C -0.054 4.054 13 N -0.307 5.307 14 C 0.392 3.608 15 O -0.506 6.506 16 N -0.381 5.381 17 C -0.014 4.014 18 C 0.048 3.952 19 H 0.126 0.874 20 O -0.372 6.372 21 C -0.030 4.030 22 O -0.396 6.396 23 C -0.129 4.129 24 C -0.187 4.187 25 H 0.092 0.908 26 H 0.131 0.869 27 H 0.153 0.847 28 H 0.252 0.748 29 H 0.250 0.750 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.238 0.762 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.115 0.885 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.632 -15.452 1.988 18.317 hybrid contribution -0.421 0.800 -0.376 0.979 sum -10.053 -14.653 1.613 17.843 Atomic orbital electron populations 1.69928 1.08899 1.29651 1.39164 1.26851 0.95705 1.04722 0.91741 0.85020 0.79237 0.75987 0.78537 1.17758 1.19285 1.19515 1.19773 0.94944 0.91132 1.46822 0.90290 1.18068 0.92692 0.93317 0.89880 1.20955 1.01881 0.94664 1.05341 1.20409 0.94426 0.98080 1.00064 1.17126 0.94738 0.87113 1.06404 1.41858 1.04520 1.08026 1.76250 1.16197 0.82123 0.84318 0.78157 1.90922 1.68117 1.32289 1.59227 1.44695 1.07477 1.07325 1.78631 1.21795 0.79130 0.97528 1.02910 1.22018 0.93733 0.88424 0.90985 0.87390 1.86587 1.76814 1.55657 1.18160 1.22755 0.93897 0.84796 1.01568 1.86461 1.29463 1.29164 1.94471 1.20671 0.98744 0.93998 0.99466 1.21174 0.97940 0.96219 1.03397 0.90832 0.86890 0.84671 0.74773 0.75046 0.91053 0.91275 0.76206 0.91064 0.91341 0.75040 0.88525 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.81 10.59 21.82 0.23 -47.57 16 2 C 0.02 1.10 5.42 85.24 0.46 1.56 16 3 Si 0.99 40.27 29.56 68.60 2.03 42.29 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.50 -27.52 9.02 23.39 0.21 -27.31 16 8 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 9 C 0.06 3.51 5.55 -21.28 -0.12 3.39 16 10 C -0.21 -10.08 9.74 22.48 0.22 -9.86 16 11 C -0.11 -4.62 9.90 22.13 0.22 -4.40 16 12 C 0.04 1.78 6.30 38.56 0.24 2.03 16 13 N -0.66 -22.34 5.31 -316.78 -1.68 -24.02 16 14 C 0.69 24.29 8.39 179.06 1.50 25.80 16 15 O -0.63 -28.68 13.78 -3.99 -0.05 -28.74 16 16 N -0.72 -17.05 5.45 -478.52 -2.61 -19.66 16 17 C 0.11 2.17 5.34 86.38 0.46 2.63 16 18 C 0.11 1.61 3.34 30.60 0.10 1.71 16 19 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 20 O -0.56 -9.27 13.05 -144.32 -1.88 -11.16 16 21 C 0.05 0.55 6.68 71.98 0.48 1.03 16 22 O -0.59 -8.05 13.62 -144.32 -1.97 -10.01 16 23 C -0.11 -5.66 8.61 22.14 0.19 -5.47 16 24 C -0.17 -9.55 8.61 22.48 0.19 -9.35 16 25 H 0.28 14.49 8.30 -92.71 -0.77 13.72 16 26 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 27 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 28 H 0.42 10.20 8.83 -92.71 -0.82 9.38 16 29 H 0.41 7.45 8.37 -92.71 -0.78 6.68 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.39 4.11 9.04 -74.06 -0.67 3.44 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.40 1.76 9.12 -74.06 -0.68 1.09 16 36 H 0.10 5.18 6.24 -2.91 -0.02 5.17 16 37 H 0.10 6.40 6.13 -2.91 -0.02 6.38 16 Total: -1.00 -77.25 320.30 -3.56 -80.81 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -1.79 Total: 36.29 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 4.17 Total: -18.24 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -4.06 Total: -91.25 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -3.90 Total: -49.91 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Total: -77.25 -3.56 -80.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119743644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.034 kcal (2) G-P(sol) polarization free energy of solvation -77.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds