Wall clock time and date at job start Tue Mar 31 2020 01:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86798 * 120.00297 * 2 1 4 4 H 1.48500 * 109.47277 * 274.98463 * 3 2 1 5 5 H 1.48499 * 109.47186 * 34.98235 * 3 2 1 6 6 H 1.48502 * 109.47582 * 154.98245 * 3 2 1 7 7 C 1.39900 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 161.98525 * 7 2 1 9 9 C 1.41154 * 119.99564 * 341.98847 * 7 2 1 10 10 C 1.40870 * 120.16117 * 155.06607 * 9 7 2 11 11 C 1.36373 * 119.82935 * 180.27750 * 10 9 7 12 12 C 1.39482 * 120.16727 * 359.51279 * 11 10 9 13 13 N 1.39236 * 119.83509 * 180.21472 * 12 11 10 14 14 C 1.34775 * 120.00326 * 144.26868 * 13 12 11 15 15 O 1.21584 * 119.99609 * 5.17141 * 14 13 12 16 16 N 1.34771 * 120.00531 * 185.17828 * 14 13 12 17 17 C 1.46500 * 120.00391 * 180.02562 * 16 14 13 18 18 C 1.53008 * 109.47239 * 179.97438 * 17 16 14 19 19 H 1.09004 * 109.46867 * 304.99469 * 18 17 16 20 20 O 1.42900 * 109.47259 * 64.99282 * 18 17 16 21 21 C 1.53002 * 109.47054 * 184.99700 * 18 17 16 22 22 O 1.42895 * 109.46829 * 174.99653 * 21 18 17 23 23 C 1.39484 * 120.33344 * 0.46912 * 12 11 10 24 24 C 1.36376 * 120.16529 * 359.79011 * 23 12 11 25 25 H 0.96999 * 119.99485 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.08696 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.91623 * 179.72669 * 11 10 9 28 28 H 0.96998 * 120.00465 * 324.26664 * 13 12 11 29 29 H 0.97007 * 119.99756 * 359.97438 * 16 14 13 30 30 H 1.09002 * 109.46776 * 299.99146 * 17 16 14 31 31 H 1.08996 * 109.47413 * 59.99441 * 17 16 14 32 32 H 0.96699 * 113.99570 * 60.00516 * 20 18 17 33 33 H 1.08996 * 109.47011 * 294.99994 * 21 18 17 34 34 H 1.09000 * 109.46801 * 54.99715 * 21 18 17 35 35 H 0.96704 * 113.99863 * 179.97438 * 22 21 18 36 36 H 1.07998 * 119.91569 * 179.77444 * 23 12 11 37 37 H 1.07998 * 120.08512 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3851 2.1072 -1.3948 5 1 1.4970 2.6200 0.8027 6 1 3.5892 1.4120 0.5921 7 6 2.0083 -1.2116 0.0005 8 1 3.0486 -1.2346 -0.2887 9 6 1.3543 -2.4038 0.3791 10 6 1.8219 -3.6472 -0.0899 11 6 1.1816 -4.7944 0.2755 12 6 0.0724 -4.7396 1.1195 13 7 -0.5735 -5.9156 1.4918 14 6 -1.0927 -6.0365 2.7296 15 8 -1.0809 -5.0872 3.4892 16 7 -1.6250 -7.2096 3.1256 17 6 -2.1899 -7.3409 4.4709 18 6 -2.7238 -8.7618 4.6635 19 1 -3.4337 -8.9939 3.8696 20 8 -1.6376 -9.6891 4.6174 21 6 -3.4244 -8.8638 6.0199 22 8 -4.0235 -10.1545 6.1506 23 6 -0.3962 -3.5123 1.5883 24 6 0.2306 -2.3563 1.2272 25 1 -0.4849 0.8401 -0.0004 26 1 2.6824 -3.6914 -0.7410 27 1 1.5362 -5.7480 -0.0867 28 1 -0.6498 -6.6479 0.8603 29 1 -1.6347 -7.9670 2.5195 30 1 -1.4156 -7.1399 5.2113 31 1 -3.0045 -6.6272 4.5942 32 1 -0.9659 -9.5422 5.2973 33 1 -2.6954 -8.7191 6.8171 34 1 -4.1956 -8.0966 6.0891 35 1 -4.4862 -10.2903 6.9888 36 1 -1.2578 -3.4775 2.2385 37 1 -0.1335 -1.4067 1.5906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119743787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:57 Heat of formation + Delta-G solvation = -107.415568 kcal Electronic energy + Delta-G solvation = -20899.262042 eV Core-core repulsion = 17448.415328 eV Total energy + Delta-G solvation = -3450.846714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.96595 -38.60320 -37.33416 -36.24737 -34.53457 -34.07049 -32.88531 -30.53804 -29.41633 -28.80259 -25.94970 -24.46474 -22.17543 -21.44977 -21.04703 -19.94268 -18.14703 -17.72058 -17.28054 -17.10000 -16.61826 -16.20433 -15.28685 -14.99706 -14.73624 -14.23356 -13.98265 -13.88061 -13.73890 -13.12997 -13.00545 -12.67057 -12.45940 -12.00939 -11.79971 -11.30877 -11.22717 -11.08824 -11.03895 -10.64912 -10.58986 -10.40828 -10.00965 -9.67386 -9.44953 -9.08414 -8.91827 -8.84886 -7.46662 -6.95229 -6.69464 -4.25081 2.70145 2.91302 3.09824 3.10489 3.15052 3.20280 3.71192 3.75580 3.96485 4.07119 4.50538 4.60162 4.67421 4.75079 4.81383 5.02133 5.09666 5.49416 5.70917 5.75434 6.20056 6.43051 6.54942 6.86779 6.88812 7.09555 7.15136 7.16110 7.29802 7.34245 7.39167 7.67134 7.90064 8.05120 8.10837 8.31449 8.52644 8.68180 8.93086 8.96543 9.14896 10.22154 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.043845 B = 0.002884 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.465877 B = 9706.820800 C =10123.271316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.105 3.895 10 C -0.216 4.216 11 C -0.106 4.106 12 C 0.010 3.990 13 N -0.665 5.665 14 C 0.695 3.305 15 O -0.579 6.579 16 N -0.748 5.748 17 C 0.113 3.887 18 C 0.097 3.903 19 H 0.112 0.888 20 O -0.551 6.551 21 C 0.047 3.953 22 O -0.565 6.565 23 C -0.086 4.086 24 C -0.157 4.157 25 H 0.280 0.720 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.391 0.609 29 H 0.397 0.603 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.376 0.624 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.380 0.620 36 H 0.107 0.893 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.325 -13.992 8.819 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.102 3.898 10 C -0.236 4.236 11 C -0.126 4.126 12 C -0.083 4.083 13 N -0.311 5.311 14 C 0.396 3.604 15 O -0.456 6.456 16 N -0.406 5.406 17 C -0.013 4.013 18 C 0.037 3.963 19 H 0.129 0.871 20 O -0.356 6.356 21 C -0.032 4.032 22 O -0.370 6.370 23 C -0.106 4.106 24 C -0.177 4.177 25 H 0.091 0.909 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.224 0.776 29 H 0.231 0.769 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.224 0.776 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.227 0.773 36 H 0.125 0.875 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.597 -13.260 8.432 17.042 hybrid contribution 0.281 0.415 0.431 0.661 sum -6.316 -12.845 8.863 16.835 Atomic orbital electron populations 1.69860 1.07580 1.29172 1.35055 1.25920 0.94717 1.01321 0.92345 0.86328 0.80802 0.80804 0.78948 1.19642 1.20058 1.18441 1.19525 0.98156 0.91360 1.39873 0.90442 1.17662 0.91383 0.92053 0.88704 1.20516 1.03712 0.92588 1.06804 1.20019 0.94722 0.97153 1.00718 1.16979 0.98355 0.83929 1.08994 1.42043 1.59300 1.17845 1.11897 1.15996 0.79048 0.82876 0.82530 1.90911 1.62767 1.37808 1.54160 1.44905 1.66395 1.13135 1.16123 1.21639 0.99006 0.95847 0.84769 1.22155 0.88842 0.87930 0.97359 0.87070 1.86628 1.34799 1.55629 1.58519 1.22787 0.97166 0.85675 0.97542 1.86531 1.74124 1.33441 1.42895 1.20567 0.99458 0.91157 0.99396 1.20980 0.99397 0.96771 1.00527 0.90903 0.88659 0.89261 0.77615 0.76917 0.91206 0.90678 0.77628 0.92822 0.92195 0.77273 0.87510 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.86 10.99 55.55 0.61 -20.25 16 2 C 0.07 1.91 5.13 -17.34 -0.09 1.82 16 3 Si 0.91 18.92 29.60 -169.99 -5.03 13.89 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.36 9.03 -37.85 -0.34 -12.70 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.10 2.85 5.57 -106.80 -0.59 2.26 16 10 C -0.22 -5.33 9.74 -39.26 -0.38 -5.71 16 11 C -0.11 -2.37 9.90 -39.79 -0.39 -2.76 16 12 C 0.01 0.23 6.30 -83.57 -0.53 -0.30 16 13 N -0.67 -12.11 5.31 -14.10 -0.07 -12.18 16 14 C 0.69 12.62 8.40 -86.92 -0.73 11.89 16 15 O -0.58 -13.04 13.78 5.29 0.07 -12.96 16 16 N -0.75 -9.58 5.51 -65.22 -0.36 -9.94 16 17 C 0.11 1.19 5.31 -4.04 -0.02 1.17 16 18 C 0.10 0.82 3.28 -26.73 -0.09 0.74 16 19 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 20 O -0.55 -5.24 13.25 -40.08 -0.53 -5.77 16 21 C 0.05 0.32 6.68 37.16 0.25 0.57 16 22 O -0.56 -4.47 13.62 -40.08 -0.55 -5.02 16 23 C -0.09 -2.19 8.61 -39.79 -0.34 -2.53 16 24 C -0.16 -4.28 8.64 -39.26 -0.34 -4.62 16 25 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 26 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 27 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.39 5.60 8.84 -40.82 -0.36 5.24 16 29 H 0.40 4.17 8.49 -40.82 -0.35 3.83 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.38 2.45 9.05 45.56 0.41 2.86 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.38 1.23 9.12 45.56 0.42 1.65 16 36 H 0.11 2.76 6.24 -52.49 -0.33 2.43 16 37 H 0.12 3.35 6.19 -52.49 -0.32 3.02 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -34.20 320.91 -7.66 -41.87 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -3.04 Total: 15.72 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -3.60 Total: -10.19 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.18 Total: -42.37 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -1.00 Total: -23.75 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.20 -7.66 -41.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119743787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.549 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds