Wall clock time and date at job start Tue Mar 31 2020 01:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86798 * 120.00297 * 2 1 4 4 H 1.48500 * 109.47277 * 274.98463 * 3 2 1 5 5 H 1.48499 * 109.47186 * 34.98235 * 3 2 1 6 6 H 1.48502 * 109.47582 * 154.98245 * 3 2 1 7 7 C 1.39900 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 161.98525 * 7 2 1 9 9 C 1.41154 * 119.99564 * 341.98847 * 7 2 1 10 10 C 1.40870 * 120.16117 * 155.06607 * 9 7 2 11 11 C 1.36373 * 119.82935 * 180.27750 * 10 9 7 12 12 C 1.39482 * 120.16727 * 359.51279 * 11 10 9 13 13 N 1.39236 * 119.83509 * 180.21472 * 12 11 10 14 14 C 1.34775 * 120.00326 * 144.26868 * 13 12 11 15 15 O 1.21584 * 119.99609 * 5.17141 * 14 13 12 16 16 N 1.34771 * 120.00531 * 185.17828 * 14 13 12 17 17 C 1.46500 * 120.00391 * 180.02562 * 16 14 13 18 18 C 1.53008 * 109.47239 * 179.97438 * 17 16 14 19 19 H 1.09004 * 109.46867 * 304.99469 * 18 17 16 20 20 O 1.42900 * 109.47259 * 64.99282 * 18 17 16 21 21 C 1.53002 * 109.47054 * 184.99700 * 18 17 16 22 22 O 1.42895 * 109.46829 * 174.99653 * 21 18 17 23 23 C 1.39484 * 120.33344 * 0.46912 * 12 11 10 24 24 C 1.36376 * 120.16529 * 359.79011 * 23 12 11 25 25 H 0.96999 * 119.99485 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.08696 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.91623 * 179.72669 * 11 10 9 28 28 H 0.96998 * 120.00465 * 324.26664 * 13 12 11 29 29 H 0.97007 * 119.99756 * 359.97438 * 16 14 13 30 30 H 1.09002 * 109.46776 * 299.99146 * 17 16 14 31 31 H 1.08996 * 109.47413 * 59.99441 * 17 16 14 32 32 H 0.96699 * 113.99570 * 60.00516 * 20 18 17 33 33 H 1.08996 * 109.47011 * 294.99994 * 21 18 17 34 34 H 1.09000 * 109.46801 * 54.99715 * 21 18 17 35 35 H 0.96704 * 113.99863 * 179.97438 * 22 21 18 36 36 H 1.07998 * 119.91569 * 179.77444 * 23 12 11 37 37 H 1.07998 * 120.08512 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3851 2.1072 -1.3948 5 1 1.4970 2.6200 0.8027 6 1 3.5892 1.4120 0.5921 7 6 2.0083 -1.2116 0.0005 8 1 3.0486 -1.2346 -0.2887 9 6 1.3543 -2.4038 0.3791 10 6 1.8219 -3.6472 -0.0899 11 6 1.1816 -4.7944 0.2755 12 6 0.0724 -4.7396 1.1195 13 7 -0.5735 -5.9156 1.4918 14 6 -1.0927 -6.0365 2.7296 15 8 -1.0809 -5.0872 3.4892 16 7 -1.6250 -7.2096 3.1256 17 6 -2.1899 -7.3409 4.4709 18 6 -2.7238 -8.7618 4.6635 19 1 -3.4337 -8.9939 3.8696 20 8 -1.6376 -9.6891 4.6174 21 6 -3.4244 -8.8638 6.0199 22 8 -4.0235 -10.1545 6.1506 23 6 -0.3962 -3.5123 1.5883 24 6 0.2306 -2.3563 1.2272 25 1 -0.4849 0.8401 -0.0004 26 1 2.6824 -3.6914 -0.7410 27 1 1.5362 -5.7480 -0.0867 28 1 -0.6498 -6.6479 0.8603 29 1 -1.6347 -7.9670 2.5195 30 1 -1.4156 -7.1399 5.2113 31 1 -3.0045 -6.6272 4.5942 32 1 -0.9659 -9.5422 5.2973 33 1 -2.6954 -8.7191 6.8171 34 1 -4.1956 -8.0966 6.0891 35 1 -4.4862 -10.2903 6.9888 36 1 -1.2578 -3.4775 2.2385 37 1 -0.1335 -1.4067 1.5906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119743787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:56 Heat of formation + Delta-G solvation = -137.008146 kcal Electronic energy + Delta-G solvation = -20900.545273 eV Core-core repulsion = 17448.415328 eV Total energy + Delta-G solvation = -3452.129945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41765 -39.57928 -38.90733 -36.92258 -36.19581 -35.33527 -34.63949 -31.59581 -31.30666 -30.47094 -27.21943 -25.92429 -23.26824 -22.93700 -22.74987 -21.52798 -19.41316 -19.21419 -18.70146 -18.01557 -17.50495 -17.27079 -17.06413 -16.27567 -16.05604 -15.71373 -15.29496 -15.07056 -14.71924 -14.59339 -14.40796 -13.92019 -13.66349 -13.65560 -13.49731 -13.18072 -12.86165 -12.75809 -12.38807 -11.90799 -11.79023 -11.53414 -11.26420 -11.14989 -10.98934 -10.90016 -10.66065 -10.12628 -9.42472 -8.82897 -8.57696 -6.24406 0.88880 1.17061 1.38944 1.47635 1.55047 1.71626 2.19430 2.23175 2.77746 3.04491 3.41649 3.48200 3.76648 3.93594 4.02680 4.19323 4.40987 4.46100 4.51548 4.55124 4.65550 4.98950 5.01262 5.11869 5.20163 5.31910 5.43068 5.46968 5.68747 5.80597 6.11326 6.14490 6.20741 6.38397 6.71012 6.73222 6.87313 6.95083 7.04147 7.15607 7.66792 8.35113 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.043845 B = 0.002884 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.465877 B = 9706.820800 C =10123.271316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.031 3.969 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.495 4.495 8 H 0.080 0.920 9 C 0.072 3.928 10 C -0.224 4.224 11 C -0.100 4.100 12 C 0.024 3.976 13 N -0.658 5.658 14 C 0.692 3.308 15 O -0.625 6.625 16 N -0.725 5.725 17 C 0.112 3.888 18 C 0.107 3.893 19 H 0.108 0.892 20 O -0.566 6.566 21 C 0.049 3.951 22 O -0.587 6.587 23 C -0.100 4.100 24 C -0.182 4.182 25 H 0.287 0.713 26 H 0.110 0.890 27 H 0.133 0.867 28 H 0.413 0.587 29 H 0.412 0.588 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.389 0.611 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.399 0.601 36 H 0.096 0.904 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.052 -15.615 8.941 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.525 4.525 8 H 0.098 0.902 9 C 0.069 3.931 10 C -0.244 4.244 11 C -0.120 4.120 12 C -0.070 4.070 13 N -0.306 5.306 14 C 0.393 3.607 15 O -0.506 6.506 16 N -0.383 5.383 17 C -0.013 4.013 18 C 0.048 3.952 19 H 0.126 0.874 20 O -0.373 6.373 21 C -0.030 4.030 22 O -0.396 6.396 23 C -0.120 4.120 24 C -0.202 4.202 25 H 0.097 0.903 26 H 0.129 0.871 27 H 0.151 0.849 28 H 0.250 0.750 29 H 0.248 0.752 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.238 0.762 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.250 0.750 36 H 0.114 0.886 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.353 -14.979 8.561 18.385 hybrid contribution 0.112 0.717 0.459 0.858 sum -6.242 -14.262 9.021 17.993 Atomic orbital electron populations 1.69926 1.09153 1.30467 1.35730 1.26823 0.95474 1.04746 0.91321 0.85186 0.79156 0.75898 0.79423 1.18421 1.19392 1.18164 1.19797 0.98524 0.92471 1.41672 0.90172 1.18002 0.91936 0.93609 0.89508 1.20804 1.04316 0.92502 1.06814 1.20368 0.93708 0.98325 0.99578 1.17021 0.98017 0.84522 1.07464 1.41825 1.58929 1.17091 1.12729 1.16182 0.78900 0.83617 0.82043 1.90893 1.64488 1.39853 1.55364 1.44733 1.64602 1.11720 1.17221 1.21803 0.98829 0.97412 0.83233 1.22025 0.88579 0.86096 0.98544 0.87406 1.86595 1.35470 1.55838 1.59420 1.22755 0.97793 0.85715 0.96729 1.86463 1.74584 1.33873 1.44674 1.20590 0.99410 0.92152 0.99837 1.20872 1.00716 0.96540 1.02044 0.90262 0.87147 0.84882 0.74975 0.75152 0.91287 0.90904 0.76194 0.91299 0.91029 0.75037 0.88582 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.11 10.99 21.82 0.24 -44.87 16 2 C 0.03 1.61 5.13 85.24 0.44 2.05 16 3 Si 0.98 39.29 29.60 68.60 2.03 41.32 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.50 -27.35 9.03 23.39 0.21 -27.14 16 8 H 0.08 4.20 7.91 -2.91 -0.02 4.18 16 9 C 0.07 4.03 5.57 -21.28 -0.12 3.91 16 10 C -0.22 -10.97 9.74 22.48 0.22 -10.75 16 11 C -0.10 -4.26 9.90 22.13 0.22 -4.05 16 12 C 0.02 1.07 6.30 38.57 0.24 1.31 16 13 N -0.66 -22.68 5.31 -316.79 -1.68 -24.36 16 14 C 0.69 24.28 8.40 179.06 1.50 25.78 16 15 O -0.63 -28.22 13.78 -3.98 -0.05 -28.27 16 16 N -0.73 -17.13 5.51 -478.53 -2.64 -19.77 16 17 C 0.11 2.16 5.31 86.38 0.46 2.62 16 18 C 0.11 1.59 3.28 30.60 0.10 1.69 16 19 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 20 O -0.57 -9.45 13.25 -144.34 -1.91 -11.36 16 21 C 0.05 0.55 6.68 71.98 0.48 1.03 16 22 O -0.59 -8.00 13.62 -144.34 -1.97 -9.97 16 23 C -0.10 -5.22 8.61 22.14 0.19 -5.03 16 24 C -0.18 -10.36 8.64 22.48 0.19 -10.17 16 25 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 26 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 27 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 28 H 0.41 10.54 8.84 -92.71 -0.82 9.73 16 29 H 0.41 7.51 8.49 -92.70 -0.79 6.72 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.39 4.16 9.05 -74.06 -0.67 3.49 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.40 1.71 9.12 -74.05 -0.68 1.04 16 36 H 0.10 5.17 6.24 -2.91 -0.02 5.16 16 37 H 0.10 5.75 6.19 -2.91 -0.02 5.73 16 Total: -1.00 -76.02 320.91 -3.64 -79.66 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -1.80 Total: 36.36 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.14 Total: -18.74 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -4.08 Total: -89.00 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -3.93 Total: -49.60 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -76.02 -3.64 -79.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119743787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.347 kcal (2) G-P(sol) polarization free energy of solvation -76.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds