Wall clock time and date at job start Tue Mar 31 2020 01:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86801 * 119.99933 * 2 1 4 4 H 1.48506 * 109.46910 * 269.99722 * 3 2 1 5 5 H 1.48498 * 109.47053 * 29.99605 * 3 2 1 6 6 H 1.48494 * 109.46984 * 150.00077 * 3 2 1 7 7 C 1.38955 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99689 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99313 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99427 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00133 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99986 * 180.27474 * 10 9 7 13 13 N 1.46901 * 109.47217 * 173.44528 * 12 10 9 14 14 C 1.47010 * 111.00308 * 293.64063 * 13 12 10 15 15 C 1.53090 * 109.26039 * 177.60479 * 14 13 12 16 16 O 1.43020 * 109.25892 * 56.84968 * 15 14 13 17 17 C 1.43023 * 113.73613 * 301.33240 * 16 15 14 18 18 H 1.09000 * 109.50105 * 298.68974 * 17 16 15 19 19 C 1.50698 * 109.50483 * 178.60407 * 17 16 15 20 20 C 1.34512 * 125.79067 * 145.00134 * 19 17 16 21 21 C 1.41373 * 106.84377 * 179.97438 * 20 19 17 22 22 C 1.34513 * 106.84288 * 0.02562 * 21 20 19 23 23 O 1.34302 * 125.79045 * 324.68474 * 19 17 16 24 24 C 1.47013 * 110.99567 * 170.00253 * 13 12 10 25 25 H 0.97000 * 120.00350 * 0.02562 * 1 2 3 26 26 H 0.96993 * 120.00936 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.47259 * 293.45227 * 12 10 9 28 28 H 1.09004 * 109.46786 * 53.44957 * 12 10 9 29 29 H 1.09000 * 109.50566 * 297.54203 * 14 13 12 30 30 H 1.09005 * 109.50733 * 57.62334 * 14 13 12 31 31 H 1.08997 * 109.50906 * 176.78249 * 15 14 13 32 32 H 1.08998 * 109.50993 * 296.87465 * 15 14 13 33 33 H 1.08006 * 126.57588 * 359.95605 * 20 19 17 34 34 H 1.08000 * 126.57905 * 179.97438 * 21 20 19 35 35 H 1.08002 * 125.79683 * 180.02562 * 22 21 20 36 36 H 1.09000 * 109.51168 * 302.32584 * 24 13 12 37 37 H 1.08995 * 109.50841 * 62.46819 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2032 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8630 -0.0068 13 7 2.1912 -5.9746 -0.1636 14 6 2.8293 -5.9403 -1.4876 15 6 3.8496 -7.0773 -1.5860 16 8 3.1938 -8.3229 -1.3332 17 6 2.5619 -8.3912 -0.0520 18 1 3.3123 -8.2772 0.7304 19 6 1.8750 -9.7239 0.0999 20 6 1.7645 -10.4264 1.2416 21 6 1.0501 -11.6057 0.9295 22 6 0.7671 -11.5537 -0.3845 23 8 1.2640 -10.4088 -0.8805 24 6 1.5285 -7.2673 0.0620 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0005 27 1 0.7040 -4.9754 0.9335 28 1 0.5355 -4.8696 -0.8354 29 1 2.0707 -6.0641 -2.2605 30 1 3.3346 -4.9841 -1.6234 31 1 4.2840 -7.0911 -2.5856 32 1 4.6377 -6.9241 -0.8488 33 1 2.1484 -10.1438 2.2109 34 1 0.7834 -12.3970 1.6145 35 1 0.2271 -12.3028 -0.9445 36 1 1.0851 -7.2803 1.0576 37 1 0.7492 -7.4124 -0.6862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121125950.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:18 Heat of formation + Delta-G solvation = -48.983672 kcal Electronic energy + Delta-G solvation = -21623.207137 eV Core-core repulsion = 18174.894220 eV Total energy + Delta-G solvation = -3448.312917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.69187 -39.63177 -38.03867 -35.31441 -33.84755 -33.28722 -32.21135 -31.27265 -29.27306 -28.34468 -25.51429 -24.13564 -23.77051 -21.89220 -20.91445 -20.20758 -19.23090 -17.96582 -17.65145 -16.50480 -16.11261 -15.93817 -15.77888 -15.11501 -15.03182 -14.67599 -14.18073 -13.88540 -13.83530 -13.45598 -13.24057 -12.94349 -12.77573 -12.34324 -12.06290 -11.79563 -11.56508 -11.46835 -11.21734 -10.93515 -10.61192 -10.40892 -10.24157 -10.06850 -9.75753 -9.50001 -8.67249 -8.45555 -8.03595 -7.95523 -6.43836 -3.84822 1.55815 2.44195 2.84499 3.16236 3.25262 3.31009 3.62210 3.85353 3.88093 4.20230 4.64728 4.76599 4.87880 4.97770 4.99350 5.05756 5.19215 5.22816 5.37810 5.49483 5.60380 5.64013 5.72583 5.76999 5.77608 5.86070 5.92128 6.08671 6.19761 6.24816 6.31875 6.93971 7.09489 7.11818 7.24341 7.53123 8.03674 8.59055 9.15651 9.51722 10.03115 10.73853 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041683 B = 0.003229 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.578526 B = 8670.464726 C = 9013.228379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.578 6.578 12 C 0.046 3.954 13 N -0.512 5.512 14 C 0.015 3.985 15 C 0.067 3.933 16 O -0.380 6.380 17 C 0.178 3.822 18 H 0.099 0.901 19 C 0.003 3.997 20 C -0.202 4.202 21 C -0.215 4.215 22 C -0.042 4.042 23 O -0.162 6.162 24 C 0.027 3.973 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.035 0.965 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.202 0.798 36 H 0.089 0.911 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -19.143 -0.213 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.462 6.462 12 C -0.085 4.085 13 N -0.237 5.237 14 C -0.113 4.113 15 C -0.009 4.009 16 O -0.299 6.299 17 C 0.119 3.881 18 H 0.116 0.884 19 C -0.048 4.048 20 C -0.221 4.221 21 C -0.234 4.234 22 C -0.110 4.110 23 O -0.057 6.057 24 C -0.102 4.102 25 H 0.082 0.918 26 H 0.225 0.775 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.130 0.870 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.218 0.782 36 H 0.108 0.892 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.691 -18.951 -0.290 18.966 hybrid contribution -1.070 0.825 -0.180 1.364 sum -0.379 -18.126 -0.470 18.136 Atomic orbital electron populations 1.69608 1.05962 1.28206 1.50489 1.25268 0.95628 0.99747 0.97276 0.85856 0.79258 0.80790 0.78386 1.20415 1.20917 1.19378 1.19698 0.93363 0.82161 1.47666 0.87869 1.41874 1.09216 1.04581 1.64307 1.19678 0.88400 0.84437 0.84643 1.90497 1.13598 1.86914 1.55160 1.21884 0.93630 0.91013 1.01934 1.61781 1.30974 1.00561 1.30342 1.22930 0.97706 1.01840 0.88808 1.22734 0.94346 0.81800 1.02036 1.88016 1.71575 1.36427 1.33896 1.20458 0.93074 0.86459 0.88079 0.88373 1.22105 1.00496 0.95344 0.86879 1.21547 1.05764 0.95745 0.99058 1.21803 1.05110 1.00350 0.96176 1.24100 1.02977 0.89117 0.94856 1.84098 1.55677 1.28231 1.37686 1.22774 0.95548 0.89322 1.02543 0.91840 0.77480 0.89042 0.93285 0.94660 0.87035 0.88154 0.91640 0.83112 0.83352 0.78151 0.89242 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 10 C 0.44 10.29 7.35 -10.98 -0.08 10.21 16 11 O -0.58 -15.21 14.26 5.55 0.08 -15.13 16 12 C 0.05 0.83 5.45 -4.97 -0.03 0.80 16 13 N -0.51 -8.61 4.42 -235.75 -1.04 -9.65 16 14 C 0.01 0.25 5.30 -3.72 -0.02 0.23 16 15 C 0.07 0.94 7.01 37.20 0.26 1.21 16 16 O -0.38 -5.66 10.44 -39.72 -0.41 -6.08 16 17 C 0.18 2.39 3.26 -27.83 -0.09 2.30 16 18 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 19 C 0.00 0.04 6.22 -35.63 -0.22 -0.18 16 20 C -0.20 -2.22 10.81 -39.71 -0.43 -2.65 16 21 C -0.22 -2.07 10.91 -39.71 -0.43 -2.51 16 22 C -0.04 -0.41 12.09 29.42 0.36 -0.06 16 23 O -0.16 -2.13 10.63 1.22 0.01 -2.12 16 24 C 0.03 0.37 4.91 -3.71 -0.02 0.36 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 27 H 0.09 1.47 8.04 -51.93 -0.42 1.05 16 28 H 0.05 0.82 8.12 -51.93 -0.42 0.39 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.11 2.13 6.10 -51.93 -0.32 1.81 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 316.04 15.07 4.76 4.76 Total: -1.00 -31.91 316.04 -6.70 -38.61 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.79 Total: 9.75 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -0.94 Total: 1.82 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.38 Total: -47.47 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.32 Total: -23.32 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.91 -6.70 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121125950.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.378 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds