Wall clock time and date at job start Tue Mar 31 2020 01:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86801 * 119.99933 * 2 1 4 4 H 1.48506 * 109.46910 * 269.99722 * 3 2 1 5 5 H 1.48498 * 109.47053 * 29.99605 * 3 2 1 6 6 H 1.48494 * 109.46984 * 150.00077 * 3 2 1 7 7 C 1.38955 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99689 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99313 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99427 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00133 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99986 * 180.27474 * 10 9 7 13 13 N 1.46901 * 109.47217 * 173.44528 * 12 10 9 14 14 C 1.47010 * 111.00308 * 293.64063 * 13 12 10 15 15 C 1.53090 * 109.26039 * 177.60479 * 14 13 12 16 16 O 1.43020 * 109.25892 * 56.84968 * 15 14 13 17 17 C 1.43023 * 113.73613 * 301.33240 * 16 15 14 18 18 H 1.09000 * 109.50105 * 298.68974 * 17 16 15 19 19 C 1.50698 * 109.50483 * 178.60407 * 17 16 15 20 20 C 1.34512 * 125.79067 * 145.00134 * 19 17 16 21 21 C 1.41373 * 106.84377 * 179.97438 * 20 19 17 22 22 C 1.34513 * 106.84288 * 0.02562 * 21 20 19 23 23 O 1.34302 * 125.79045 * 324.68474 * 19 17 16 24 24 C 1.47013 * 110.99567 * 170.00253 * 13 12 10 25 25 H 0.97000 * 120.00350 * 0.02562 * 1 2 3 26 26 H 0.96993 * 120.00936 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.47259 * 293.45227 * 12 10 9 28 28 H 1.09004 * 109.46786 * 53.44957 * 12 10 9 29 29 H 1.09000 * 109.50566 * 297.54203 * 14 13 12 30 30 H 1.09005 * 109.50733 * 57.62334 * 14 13 12 31 31 H 1.08997 * 109.50906 * 176.78249 * 15 14 13 32 32 H 1.08998 * 109.50993 * 296.87465 * 15 14 13 33 33 H 1.08006 * 126.57588 * 359.95605 * 20 19 17 34 34 H 1.08000 * 126.57905 * 179.97438 * 21 20 19 35 35 H 1.08002 * 125.79683 * 180.02562 * 22 21 20 36 36 H 1.09000 * 109.51168 * 302.32584 * 24 13 12 37 37 H 1.08995 * 109.50841 * 62.46819 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2032 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8630 -0.0068 13 7 2.1912 -5.9746 -0.1636 14 6 2.8293 -5.9403 -1.4876 15 6 3.8496 -7.0773 -1.5860 16 8 3.1938 -8.3229 -1.3332 17 6 2.5619 -8.3912 -0.0520 18 1 3.3123 -8.2772 0.7304 19 6 1.8750 -9.7239 0.0999 20 6 1.7645 -10.4264 1.2416 21 6 1.0501 -11.6057 0.9295 22 6 0.7671 -11.5537 -0.3845 23 8 1.2640 -10.4088 -0.8805 24 6 1.5285 -7.2673 0.0620 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0005 27 1 0.7040 -4.9754 0.9335 28 1 0.5355 -4.8696 -0.8354 29 1 2.0707 -6.0641 -2.2605 30 1 3.3346 -4.9841 -1.6234 31 1 4.2840 -7.0911 -2.5856 32 1 4.6377 -6.9241 -0.8488 33 1 2.1484 -10.1438 2.2109 34 1 0.7834 -12.3970 1.6145 35 1 0.2271 -12.3028 -0.9445 36 1 1.0851 -7.2803 1.0576 37 1 0.7492 -7.4124 -0.6862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121125950.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:17 Heat of formation + Delta-G solvation = -72.482787 kcal Electronic energy + Delta-G solvation = -21624.226135 eV Core-core repulsion = 18174.894220 eV Total energy + Delta-G solvation = -3449.331915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.51589 -40.94462 -39.74032 -36.71656 -35.78545 -34.16618 -33.29218 -33.16334 -30.54477 -29.49008 -27.17684 -25.40520 -25.16986 -22.70892 -22.00426 -21.21781 -20.99857 -19.89546 -18.61060 -17.94837 -17.37813 -17.01739 -16.85839 -16.57569 -16.45867 -16.06604 -15.83264 -15.39572 -15.21860 -14.87831 -14.45859 -13.96781 -13.70903 -13.53199 -13.47528 -13.23889 -13.07406 -12.91165 -12.63522 -12.42677 -12.37115 -12.12105 -11.77195 -11.46066 -10.97230 -10.81935 -10.30135 -10.00912 -9.45340 -9.38802 -8.46741 -5.95409 0.72481 1.37885 1.42054 1.54694 1.68415 2.01702 2.04799 2.28308 2.59516 2.65074 3.19875 3.31172 3.69429 3.81861 3.90371 4.01951 4.11816 4.17137 4.23096 4.33868 4.38837 4.43580 4.52120 4.53843 4.68273 4.85727 4.85788 4.90485 5.02586 5.16313 5.41012 5.59296 5.71805 5.86269 6.00134 6.04709 6.26022 6.59680 7.12437 7.55436 8.10590 8.70724 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041683 B = 0.003229 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.578526 B = 8670.464726 C = 9013.228379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.443 3.557 11 O -0.612 6.612 12 C 0.057 3.943 13 N -0.526 5.526 14 C 0.017 3.983 15 C 0.074 3.926 16 O -0.390 6.390 17 C 0.178 3.822 18 H 0.103 0.897 19 C -0.029 4.029 20 C -0.197 4.197 21 C -0.223 4.223 22 C -0.040 4.040 23 O -0.188 6.188 24 C 0.033 3.967 25 H 0.277 0.723 26 H 0.396 0.604 27 H 0.115 0.885 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.063 0.937 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.237 0.763 36 H 0.106 0.894 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 -20.481 0.202 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.461 4.461 8 H 0.099 0.901 9 N -0.211 5.211 10 C 0.230 3.770 11 O -0.498 6.498 12 C -0.074 4.074 13 N -0.251 5.251 14 C -0.111 4.111 15 C -0.003 4.003 16 O -0.310 6.310 17 C 0.120 3.880 18 H 0.121 0.879 19 C -0.079 4.079 20 C -0.216 4.216 21 C -0.242 4.242 22 C -0.108 4.108 23 O -0.084 6.084 24 C -0.095 4.095 25 H 0.087 0.913 26 H 0.229 0.771 27 H 0.133 0.867 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.081 0.919 33 H 0.184 0.816 34 H 0.193 0.807 35 H 0.253 0.747 36 H 0.124 0.876 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.036 -20.310 0.129 20.311 hybrid contribution -0.867 1.114 -0.295 1.442 sum -0.903 -19.196 -0.166 19.218 Atomic orbital electron populations 1.69670 1.06871 1.29295 1.50393 1.26038 0.96518 1.02421 0.96306 0.84932 0.77926 0.76898 0.78621 1.19684 1.19626 1.19679 1.19664 0.92727 0.83877 1.49817 0.90140 1.41934 1.09313 1.04692 1.65145 1.20606 0.88281 0.85682 0.82413 1.90473 1.15460 1.87728 1.56089 1.21766 0.93288 0.88478 1.03825 1.61752 1.31300 1.01485 1.30570 1.22840 0.98123 1.01203 0.88914 1.22721 0.93439 0.80866 1.03230 1.88010 1.71722 1.36361 1.34870 1.20487 0.92956 0.86996 0.87545 0.87941 1.22036 1.02487 0.95790 0.87635 1.21894 1.04809 0.95796 0.99130 1.22184 1.04784 1.00541 0.96706 1.24921 1.01910 0.88430 0.95495 1.84070 1.56349 1.29491 1.38497 1.22808 0.95543 0.87812 1.03330 0.91317 0.77073 0.86660 0.91697 0.94429 0.90191 0.86088 0.91895 0.81603 0.80743 0.74660 0.87562 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.27 5.29 -306.98 -1.62 -30.89 16 10 C 0.44 20.91 7.35 87.66 0.64 21.55 16 11 O -0.61 -33.15 14.26 -3.06 -0.04 -33.19 16 12 C 0.06 2.01 5.45 85.56 0.47 2.48 16 13 N -0.53 -17.42 4.42 -899.78 -3.98 -21.39 16 14 C 0.02 0.57 5.30 86.31 0.46 1.03 16 15 C 0.07 2.05 7.01 72.01 0.50 2.55 16 16 O -0.39 -11.36 10.44 -144.69 -1.51 -12.87 16 17 C 0.18 4.62 3.26 29.88 0.10 4.72 16 18 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 19 C -0.03 -0.71 6.22 24.83 0.15 -0.55 16 20 C -0.20 -3.92 10.81 22.19 0.24 -3.68 16 21 C -0.22 -3.67 10.91 22.19 0.24 -3.43 16 22 C -0.04 -0.68 12.09 66.97 0.81 0.13 16 23 O -0.19 -4.67 10.63 1.78 0.02 -4.65 16 24 C 0.03 0.88 4.91 86.32 0.42 1.30 16 25 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 26 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 27 H 0.12 3.50 8.04 -2.39 -0.02 3.48 16 28 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 3.16 6.10 -2.38 -0.01 3.15 16 31 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.24 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.11 2.45 8.09 -2.39 -0.02 2.43 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -69.24 316.04 0.85 -68.39 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.36 Total: 31.19 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 5.32 Total: 8.01 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -5.32 Total: -101.63 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -1.54 Total: -50.72 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -69.24 0.85 -68.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121125950.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.093 kcal (2) G-P(sol) polarization free energy of solvation -69.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds