Wall clock time and date at job start Tue Mar 31 2020 01:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86791 * 119.99947 * 2 1 4 4 H 1.48503 * 109.47560 * 270.00249 * 3 2 1 5 5 H 1.48501 * 109.47081 * 30.00639 * 3 2 1 6 6 H 1.48505 * 109.46993 * 150.00228 * 3 2 1 7 7 C 1.37882 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99471 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00311 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47356 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47326 * 180.02562 * 10 9 7 12 12 C 1.35065 * 125.56872 * 90.02359 * 11 10 9 13 13 O 1.21301 * 127.28417 * 359.97438 * 12 11 10 14 14 C 1.49978 * 105.43338 * 179.97438 * 12 11 10 15 15 O 1.21304 * 127.28933 * 180.02562 * 14 12 11 16 16 N 1.35064 * 105.43214 * 0.02562 * 14 12 11 17 17 C 1.46506 * 125.56842 * 179.97438 * 16 14 12 18 18 C 1.53869 * 110.02971 * 60.02212 * 17 16 14 19 19 C 1.54266 * 106.60031 * 240.71516 * 18 17 16 20 20 C 1.54894 * 104.31305 * 336.32486 * 19 18 17 21 21 C 1.54266 * 110.03132 * 302.85831 * 17 16 14 22 22 C 1.34277 * 108.86697 * 0.22710 * 16 14 12 23 23 O 1.21474 * 124.30296 * 179.75128 * 22 16 14 24 24 H 0.96996 * 119.99603 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47373 * 60.00141 * 9 7 2 26 26 H 1.09002 * 109.47404 * 299.99969 * 9 7 2 27 27 H 1.09003 * 109.46921 * 59.99673 * 10 9 7 28 28 H 1.09002 * 109.46682 * 300.00220 * 10 9 7 29 29 H 1.08999 * 110.05416 * 181.44563 * 17 16 14 30 30 H 1.09001 * 110.02983 * 121.43268 * 18 17 16 31 31 H 1.08996 * 110.07773 * 0.02562 * 18 17 16 32 32 H 1.09002 * 110.48629 * 95.07240 * 19 18 17 33 33 H 1.08998 * 110.48744 * 217.58143 * 19 18 17 34 34 H 1.08996 * 110.75388 * 156.31523 * 20 19 18 35 35 H 1.08993 * 110.76071 * 279.69749 * 20 19 18 36 36 H 1.09005 * 110.48526 * 261.57511 * 21 17 16 37 37 H 1.09007 * 110.48724 * 24.07994 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 1.1208 -5.6111 -1.1001 13 8 1.3000 -5.3011 -2.2591 14 6 0.4169 -6.8309 -0.5844 15 8 -0.0932 -7.7164 -1.2380 16 7 0.4711 -6.7350 0.7617 17 6 -0.0886 -7.7031 1.7083 18 6 0.5617 -9.0817 1.4984 19 6 -0.5757 -10.0522 1.1185 20 6 -1.8511 -9.3944 1.7016 21 6 -1.5984 -7.8838 1.4485 22 6 1.1169 -5.6046 1.0908 23 8 1.3200 -5.2395 2.2314 24 1 -0.4849 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6248 -2.5572 0.8897 27 1 2.8720 -3.6044 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.0764 -7.3641 2.7310 30 1 1.0422 -9.4120 2.4193 31 1 1.2941 -9.0313 0.6927 32 1 -0.6543 -10.1425 0.0351 33 1 -0.4100 -11.0300 1.5708 34 1 -2.7391 -9.7346 1.1690 35 1 -1.9375 -9.5983 2.7688 36 1 -2.1802 -7.2783 2.1436 37 1 -1.8425 -7.6216 0.4190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121805224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:49 Heat of formation + Delta-G solvation = -73.443717 kcal Electronic energy + Delta-G solvation = -22282.879805 eV Core-core repulsion = 18833.506221 eV Total energy + Delta-G solvation = -3449.373584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.20903 -39.25924 -39.03022 -37.56095 -36.20558 -34.98838 -33.12015 -30.66912 -29.03091 -28.36350 -25.92510 -25.03542 -22.59418 -22.30898 -21.05452 -20.60294 -20.19165 -17.64292 -17.47595 -16.95378 -16.49650 -16.27557 -15.84735 -15.27695 -14.97380 -14.68227 -14.51092 -14.36391 -14.16946 -13.53376 -13.16975 -12.68839 -12.50940 -12.32476 -12.17444 -11.70613 -11.43950 -11.35334 -11.16512 -11.03392 -10.96789 -10.84971 -10.73788 -10.29689 -10.21061 -9.92779 -9.84087 -9.35245 -9.14751 -8.47003 -6.11655 -4.16485 0.44108 1.93222 2.31857 2.61812 2.81880 3.28228 3.34482 3.37392 4.05118 4.18685 4.26557 4.38281 4.53372 4.88697 4.97359 5.12931 5.17290 5.23591 5.25477 5.37922 5.38064 5.58766 5.63995 5.68164 5.81032 5.88637 5.91736 6.06382 6.10106 6.12912 6.46117 6.71329 6.93574 7.33988 7.45860 7.53794 7.74106 7.85272 8.18849 8.88290 9.48489 10.99915 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031571 B = 0.004141 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.669184 B = 6759.893389 C = 7029.173469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.009 3.991 10 C 0.120 3.880 11 N -0.563 5.563 12 C 0.502 3.498 13 O -0.413 6.413 14 C 0.508 3.492 15 O -0.420 6.420 16 N -0.573 5.573 17 C 0.145 3.855 18 C -0.133 4.133 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.138 4.138 22 C 0.706 3.294 23 O -0.486 6.486 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.026 0.974 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.934 -18.910 4.015 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.029 4.029 10 C 0.003 3.997 11 N -0.311 5.311 12 C 0.282 3.718 13 O -0.278 6.278 14 C 0.289 3.711 15 O -0.285 6.285 16 N -0.323 5.323 17 C 0.045 3.955 18 C -0.171 4.171 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.176 4.176 22 C 0.409 3.591 23 O -0.355 6.355 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.135 0.865 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.117 -18.868 3.665 19.253 hybrid contribution 0.375 1.100 0.022 1.162 sum -0.742 -17.768 3.688 18.162 Atomic orbital electron populations 1.69968 1.06181 1.27012 1.49718 1.25000 0.94888 0.99479 0.94779 0.86478 0.79768 0.82880 0.78210 1.20504 1.21126 1.19670 1.20949 0.93131 0.90079 1.52215 0.92058 1.19470 0.94297 0.90745 0.98375 1.22413 0.95567 0.78021 1.03747 1.47184 1.52985 1.24768 1.06163 1.20817 0.79976 0.84913 0.86073 1.90825 1.50260 1.69870 1.16820 1.21093 0.80069 0.87439 0.82536 1.90777 1.39214 1.35559 1.62960 1.46982 1.53738 1.23093 1.08462 1.22136 0.93594 0.87139 0.92671 1.22510 0.98739 0.93253 1.02625 1.22340 0.93966 0.97934 1.01755 1.22481 0.98176 0.93835 1.01119 1.22837 0.93581 0.97761 1.03422 1.16036 0.77938 0.79512 0.85573 1.90996 1.56516 1.69359 1.18634 0.92722 0.95812 0.95594 0.88984 0.89120 0.86452 0.90121 0.91057 0.90769 0.91296 0.90868 0.90988 0.90224 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.71 5.46 -17.81 -0.10 1.61 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -14.28 9.11 -34.44 -0.31 -14.60 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.01 0.22 5.30 -27.89 -0.15 0.08 16 10 C 0.12 2.37 5.80 -4.05 -0.02 2.34 16 11 N -0.56 -9.97 2.66 -121.22 -0.32 -10.29 16 12 C 0.50 8.65 8.31 -11.20 -0.09 8.56 16 13 O -0.41 -8.07 17.88 5.54 0.10 -7.97 16 14 C 0.51 7.56 7.07 -11.20 -0.08 7.48 16 15 O -0.42 -6.46 16.69 5.54 0.09 -6.37 16 16 N -0.57 -7.88 2.53 -112.88 -0.29 -8.16 16 17 C 0.15 1.56 3.52 -66.81 -0.24 1.32 16 18 C -0.13 -1.19 6.20 -25.62 -0.16 -1.35 16 19 C -0.12 -0.98 6.82 -25.07 -0.17 -1.15 16 20 C -0.12 -0.90 6.94 -24.55 -0.17 -1.07 16 21 C -0.14 -1.36 6.37 -24.88 -0.16 -1.51 16 22 C 0.71 11.67 8.32 -87.81 -0.73 10.94 16 23 O -0.49 -9.06 17.05 5.39 0.09 -8.96 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 1.73 7.99 -51.93 -0.41 1.31 16 28 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 29 H 0.12 1.20 7.64 -51.93 -0.40 0.81 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.72 7.50 -51.93 -0.39 0.33 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.92 6.60 -51.93 -0.34 0.58 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -31.01 319.19 -7.07 -38.07 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -4.89 Total: -4.31 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: -2.38 Total: 12.64 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.13 Total: -44.04 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.28 Total: -23.30 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.01 -7.07 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121805224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.371 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds