Wall clock time and date at job start Tue Mar 31 2020 01:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86791 * 119.99947 * 2 1 4 4 H 1.48503 * 109.47560 * 270.00249 * 3 2 1 5 5 H 1.48501 * 109.47081 * 30.00639 * 3 2 1 6 6 H 1.48505 * 109.46993 * 150.00228 * 3 2 1 7 7 C 1.37882 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99471 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00311 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47356 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47326 * 180.02562 * 10 9 7 12 12 C 1.35065 * 125.56872 * 90.02359 * 11 10 9 13 13 O 1.21301 * 127.28417 * 359.97438 * 12 11 10 14 14 C 1.49978 * 105.43338 * 179.97438 * 12 11 10 15 15 O 1.21304 * 127.28933 * 180.02562 * 14 12 11 16 16 N 1.35064 * 105.43214 * 0.02562 * 14 12 11 17 17 C 1.46506 * 125.56842 * 179.97438 * 16 14 12 18 18 C 1.53869 * 110.02971 * 60.02212 * 17 16 14 19 19 C 1.54266 * 106.60031 * 240.71516 * 18 17 16 20 20 C 1.54894 * 104.31305 * 336.32486 * 19 18 17 21 21 C 1.54266 * 110.03132 * 302.85831 * 17 16 14 22 22 C 1.34277 * 108.86697 * 0.22710 * 16 14 12 23 23 O 1.21474 * 124.30296 * 179.75128 * 22 16 14 24 24 H 0.96996 * 119.99603 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47373 * 60.00141 * 9 7 2 26 26 H 1.09002 * 109.47404 * 299.99969 * 9 7 2 27 27 H 1.09003 * 109.46921 * 59.99673 * 10 9 7 28 28 H 1.09002 * 109.46682 * 300.00220 * 10 9 7 29 29 H 1.08999 * 110.05416 * 181.44563 * 17 16 14 30 30 H 1.09001 * 110.02983 * 121.43268 * 18 17 16 31 31 H 1.08996 * 110.07773 * 0.02562 * 18 17 16 32 32 H 1.09002 * 110.48629 * 95.07240 * 19 18 17 33 33 H 1.08998 * 110.48744 * 217.58143 * 19 18 17 34 34 H 1.08996 * 110.75388 * 156.31523 * 20 19 18 35 35 H 1.08993 * 110.76071 * 279.69749 * 20 19 18 36 36 H 1.09005 * 110.48526 * 261.57511 * 21 17 16 37 37 H 1.09007 * 110.48724 * 24.07994 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 1.1208 -5.6111 -1.1001 13 8 1.3000 -5.3011 -2.2591 14 6 0.4169 -6.8309 -0.5844 15 8 -0.0932 -7.7164 -1.2380 16 7 0.4711 -6.7350 0.7617 17 6 -0.0886 -7.7031 1.7083 18 6 0.5617 -9.0817 1.4984 19 6 -0.5757 -10.0522 1.1185 20 6 -1.8511 -9.3944 1.7016 21 6 -1.5984 -7.8838 1.4485 22 6 1.1169 -5.6046 1.0908 23 8 1.3200 -5.2395 2.2314 24 1 -0.4849 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6248 -2.5572 0.8897 27 1 2.8720 -3.6044 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.0764 -7.3641 2.7310 30 1 1.0422 -9.4120 2.4193 31 1 1.2941 -9.0313 0.6927 32 1 -0.6543 -10.1425 0.0351 33 1 -0.4100 -11.0300 1.5708 34 1 -2.7391 -9.7346 1.1690 35 1 -1.9375 -9.5983 2.7688 36 1 -2.1802 -7.2783 2.1436 37 1 -1.8425 -7.6216 0.4190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121805224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:48 Heat of formation + Delta-G solvation = -92.053306 kcal Electronic energy + Delta-G solvation = -22283.686778 eV Core-core repulsion = 18833.506221 eV Total energy + Delta-G solvation = -3450.180557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.54743 -40.47122 -40.42707 -38.57671 -37.64492 -36.46775 -34.98037 -32.36660 -29.74164 -29.54340 -27.37405 -26.68439 -24.14596 -23.70133 -22.29756 -21.63605 -21.20347 -19.09014 -18.78987 -18.37604 -18.26381 -17.50411 -16.98866 -16.56251 -16.44100 -16.31104 -15.77298 -15.71584 -15.22161 -14.99622 -14.42011 -14.27141 -14.00412 -13.66573 -13.25161 -13.03873 -12.89427 -12.77986 -12.26179 -12.16590 -12.10224 -12.06902 -11.97806 -11.93530 -11.48550 -11.46460 -11.13394 -11.07652 -10.78674 -10.61080 -8.25033 -6.37682 -0.92136 0.68706 0.91394 1.31932 1.41674 1.43584 1.44513 1.55759 2.40374 2.70452 3.10464 3.34159 3.51905 3.67395 3.79639 4.04876 4.17023 4.25943 4.39050 4.40907 4.45013 4.45739 4.65415 4.67711 4.73918 4.86867 5.00588 5.15624 5.21204 5.23152 5.34526 5.37216 5.40637 5.47585 5.66051 5.71549 5.98597 6.07954 6.40235 6.77430 7.32695 8.87699 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031571 B = 0.004141 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.669184 B = 6759.893389 C = 7029.173469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.257 1.257 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.016 3.984 10 C 0.135 3.865 11 N -0.570 5.570 12 C 0.503 3.497 13 O -0.439 6.439 14 C 0.523 3.477 15 O -0.418 6.418 16 N -0.559 5.559 17 C 0.134 3.866 18 C -0.130 4.130 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.141 4.141 22 C 0.712 3.288 23 O -0.505 6.505 24 H 0.265 0.735 25 H -0.008 1.008 26 H -0.004 1.004 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -19.946 4.960 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.580 4.580 8 H 0.094 0.906 9 C -0.021 4.021 10 C 0.016 3.984 11 N -0.317 5.317 12 C 0.284 3.716 13 O -0.306 6.306 14 C 0.303 3.697 15 O -0.284 6.284 16 N -0.308 5.308 17 C 0.035 3.965 18 C -0.168 4.168 19 C -0.158 4.158 20 C -0.148 4.148 21 C -0.179 4.179 22 C 0.416 3.584 23 O -0.375 6.375 24 H 0.073 0.927 25 H 0.011 0.989 26 H 0.015 0.985 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.144 0.856 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.293 -19.955 4.622 20.485 hybrid contribution 0.063 1.372 -0.266 1.399 sum -0.230 -18.583 4.356 19.088 Atomic orbital electron populations 1.70112 1.08069 1.28052 1.51022 1.26008 0.95735 1.03655 0.94280 0.85339 0.78746 0.77833 0.78490 1.19832 1.21027 1.18072 1.21455 0.94101 0.90996 1.51497 0.90562 1.19276 0.94608 0.92888 0.95375 1.22046 0.94203 0.77104 1.05028 1.47074 1.53194 1.24402 1.07011 1.21200 0.79398 0.85451 0.85550 1.90805 1.51242 1.70749 1.17777 1.20536 0.79832 0.86488 0.82820 1.90789 1.39212 1.35318 1.63037 1.47024 1.52883 1.22561 1.08286 1.22604 0.94315 0.87351 0.92227 1.22548 0.98783 0.92152 1.03365 1.22337 0.93688 0.98813 1.00924 1.22493 0.98192 0.91687 1.02470 1.22877 0.92922 0.99821 1.02275 1.16025 0.77689 0.79852 0.84880 1.90984 1.57354 1.69970 1.19214 0.92652 0.98944 0.98536 0.87635 0.87880 0.85593 0.87813 0.92262 0.92438 0.89089 0.90339 0.88960 0.89660 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.02 0.85 5.30 29.85 0.16 1.01 16 10 C 0.13 5.32 5.80 86.38 0.50 5.82 16 11 N -0.57 -20.25 2.66 -774.23 -2.06 -22.31 16 12 C 0.50 17.44 8.31 87.39 0.73 18.17 16 13 O -0.44 -17.43 17.88 -3.09 -0.06 -17.48 16 14 C 0.52 15.39 7.07 87.39 0.62 16.01 16 15 O -0.42 -12.64 16.69 -3.10 -0.05 -12.69 16 16 N -0.56 -14.98 2.53 -747.84 -1.89 -16.87 16 17 C 0.13 2.67 3.52 45.71 0.16 2.83 16 18 C -0.13 -2.04 6.20 31.32 0.19 -1.85 16 19 C -0.12 -1.63 6.82 31.67 0.22 -1.42 16 20 C -0.11 -1.41 6.94 32.01 0.22 -1.19 16 21 C -0.14 -2.58 6.37 31.79 0.20 -2.37 16 22 C 0.71 23.30 8.32 179.36 1.49 24.79 16 23 O -0.51 -18.57 17.05 -3.63 -0.06 -18.63 16 24 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 25 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.11 3.89 7.99 -2.39 -0.02 3.87 16 28 H 0.10 3.81 8.10 -2.39 -0.02 3.79 16 29 H 0.13 2.34 7.64 -2.39 -0.02 2.32 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.09 7.50 -2.39 -0.02 1.08 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.06 1.33 6.60 -2.38 -0.02 1.31 16 Total: -1.00 -67.27 319.19 4.46 -62.82 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: 1.08 Total: 3.01 kcal Atomic # 6 Polarization: 27.77 SS G_CDS: 5.19 Total: 32.95 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -3.67 Total: -95.22 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -0.17 Total: -48.80 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -67.27 4.46 -62.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121805224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.237 kcal (2) G-P(sol) polarization free energy of solvation -67.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds