Wall clock time and date at job start Tue Mar 31 2020 01:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35029 * 119.55466 * 2 1 4 4 C 1.40923 * 119.80810 * 179.97438 * 3 2 1 5 5 O 1.35440 * 120.51165 * 179.97438 * 4 3 2 6 6 C 1.38259 * 118.97345 * 0.02562 * 4 3 2 7 7 C 1.39971 * 119.12576 * 359.73962 * 6 4 3 8 8 O 1.22119 * 119.92972 * 180.26097 * 7 6 4 9 9 N 1.34589 * 120.14050 * 0.53067 * 7 6 4 10 10 C 1.46500 * 119.46747 * 179.73493 * 9 7 6 11 11 C 1.50706 * 109.47299 * 269.72957 * 10 9 7 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.47194 * 34.71875 * 14 13 11 16 16 C 1.52997 * 109.46691 * 274.72265 * 14 13 11 17 17 C 1.50700 * 109.47204 * 154.72097 * 14 13 11 18 18 H 1.07995 * 120.00109 * 359.97438 * 17 14 13 19 19 C 1.37873 * 119.99681 * 180.02562 * 17 14 13 20 20 N 1.31521 * 120.00364 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99840 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47130 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47127 * 119.99459 * 21 19 17 24 24 H 1.48498 * 109.47285 * 239.99667 * 21 19 17 25 25 H 1.08994 * 109.46871 * 270.01523 * 1 2 3 26 26 H 1.08998 * 109.47081 * 30.02201 * 1 2 3 27 27 H 1.09001 * 109.46865 * 150.01985 * 1 2 3 28 28 H 1.07997 * 120.09460 * 0.02562 * 3 2 1 29 29 H 0.96701 * 114.00011 * 180.02562 * 5 4 3 30 30 H 1.08004 * 120.43571 * 179.97438 * 6 4 3 31 31 H 1.09004 * 109.47418 * 149.73108 * 10 9 7 32 32 H 1.08998 * 109.47468 * 29.73035 * 10 9 7 33 33 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 34 34 H 1.09001 * 109.47659 * 299.99430 * 16 14 13 35 35 H 1.08995 * 109.47574 * 60.00208 * 16 14 13 36 36 H 1.09002 * 109.46832 * 179.97438 * 16 14 13 37 37 H 0.96994 * 119.99652 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1746 0.0000 4 6 3.5823 1.1808 0.0005 5 8 4.2648 2.3507 0.0000 6 6 4.2574 -0.0257 0.0005 7 6 3.5230 -1.2173 0.0055 8 8 4.1042 -2.2913 0.0104 9 7 2.1775 -1.1820 -0.0005 10 6 1.4236 -2.4381 -0.0010 11 6 1.1656 -2.8685 -1.4221 12 8 1.5712 -2.1924 -2.3436 13 7 0.4833 -4.0043 -1.6688 14 6 0.2330 -4.4231 -3.0503 15 1 1.0831 -4.1458 -3.6737 16 6 -1.0286 -3.7324 -3.5718 17 6 0.0430 -5.9174 -3.0956 18 1 0.1031 -6.4972 -2.1865 19 6 -0.2066 -6.5443 -4.2980 20 7 -0.2793 -5.8382 -5.4052 21 14 -0.4428 -8.3964 -4.3542 22 1 -0.3144 -8.9536 -2.9837 23 1 -1.7921 -8.7073 -4.8910 24 1 0.5907 -9.0009 -5.2326 25 1 -0.3633 0.0003 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6274 2.1066 0.0004 29 1 5.2260 2.2453 0.0001 30 1 5.3372 -0.0485 0.0005 31 1 0.4733 -2.2917 0.5124 32 1 1.9995 -3.2077 0.5128 33 1 0.1618 -4.5469 -0.9317 34 1 -1.8788 -4.0096 -2.9484 35 1 -0.8912 -2.6516 -3.5390 36 1 -1.2146 -4.0436 -4.5997 37 1 -0.4552 -6.2793 -6.2509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124403155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:51 Heat of formation + Delta-G solvation = -84.658089 kcal Electronic energy + Delta-G solvation = -21987.058298 eV Core-core repulsion = 18537.198422 eV Total energy + Delta-G solvation = -3449.859876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56715 -39.03829 -38.29396 -36.90587 -34.88377 -33.32461 -32.42666 -31.66303 -29.51398 -27.57806 -27.32684 -25.29112 -22.91345 -22.75311 -21.21278 -19.60759 -18.74523 -17.71712 -17.43716 -17.13616 -16.03434 -15.51081 -15.26308 -15.07534 -14.76845 -14.32820 -14.10284 -13.78245 -13.70469 -13.56682 -13.30945 -13.01842 -12.59929 -12.38457 -12.18086 -11.76009 -11.57406 -11.22419 -11.11910 -10.97670 -10.79816 -10.34838 -10.27665 -9.89983 -9.60766 -9.09625 -8.97032 -8.59167 -8.01759 -7.92293 -6.15061 -4.24514 0.82852 1.92527 2.57280 3.17338 3.22956 3.30928 3.33647 3.43551 3.63456 4.03207 4.30232 4.36053 4.70545 4.90890 4.95740 5.09665 5.16428 5.17642 5.21787 5.30698 5.43614 5.63941 5.66844 5.94667 6.04602 6.39538 6.75360 6.87205 7.07924 7.15820 7.19755 7.35738 7.47897 7.64571 7.85973 8.10003 8.20198 8.54283 8.72375 8.98985 9.42873 10.91054 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032438 B = 0.003915 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.965426 B = 7149.918310 C = 7424.602519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.213 3.787 3 C -0.254 4.254 4 C 0.243 3.757 5 O -0.468 6.468 6 C -0.368 4.368 7 C 0.540 3.460 8 O -0.552 6.552 9 N -0.481 5.481 10 C 0.062 3.938 11 C 0.489 3.511 12 O -0.540 6.540 13 N -0.703 5.703 14 C 0.264 3.736 15 H 0.049 0.951 16 C -0.145 4.145 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.066 3.934 20 N -0.883 5.883 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.151 0.849 29 H 0.406 0.594 30 H 0.148 0.852 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.390 0.610 34 H 0.027 0.973 35 H 0.013 0.987 36 H 0.091 0.909 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 13.696 13.815 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.102 3.898 3 C -0.278 4.278 4 C 0.190 3.810 5 O -0.270 6.270 6 C -0.390 4.390 7 C 0.344 3.656 8 O -0.435 6.435 9 N -0.192 5.192 10 C -0.064 4.064 11 C 0.272 3.728 12 O -0.418 6.418 13 N -0.351 5.351 14 C 0.163 3.837 15 H 0.067 0.933 16 C -0.204 4.204 17 C -0.572 4.572 18 H 0.081 0.919 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.169 0.831 29 H 0.259 0.741 30 H 0.165 0.835 31 H 0.134 0.866 32 H 0.144 0.856 33 H 0.223 0.777 34 H 0.046 0.954 35 H 0.032 0.968 36 H 0.109 0.891 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.864 13.704 12.915 18.851 hybrid contribution 0.409 -1.374 0.138 1.440 sum 1.273 12.330 13.053 18.001 Atomic orbital electron populations 1.21192 0.87749 1.05775 1.04140 1.20266 0.95129 0.84727 0.89658 1.19636 0.90995 0.97622 1.19519 1.19201 0.91571 0.84222 0.85963 1.84775 1.24929 1.28789 1.88512 1.22128 1.00956 0.90593 1.25371 1.16428 0.79936 0.90956 0.78269 1.90971 1.67642 1.31362 1.53512 1.45099 1.08154 1.05980 1.59982 1.21944 0.98712 0.87366 0.98375 1.20410 0.79543 0.82847 0.89997 1.90710 1.51436 1.54179 1.45482 1.46478 1.54379 1.22407 1.11849 1.18795 0.94945 0.93766 0.76220 0.93343 1.22067 0.98083 0.96167 1.04076 1.21241 1.50562 0.91144 0.94300 0.91908 1.24893 0.94716 0.98776 0.95328 1.69911 1.48170 1.35457 0.98544 0.86373 0.77773 0.84610 0.78224 1.19685 1.20853 1.20840 0.88832 0.88526 0.89724 0.83093 0.74096 0.83450 0.86579 0.85605 0.77728 0.95363 0.96765 0.89057 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.05 36.01 0.33 -0.80 16 2 C 0.21 2.58 6.65 -81.93 -0.54 2.03 16 3 C -0.25 -2.88 9.57 -39.71 -0.38 -3.26 16 4 C 0.24 2.89 6.95 -38.56 -0.27 2.62 16 5 O -0.47 -4.23 13.58 -18.01 -0.24 -4.47 16 6 C -0.37 -5.24 9.71 -38.92 -0.38 -5.62 16 7 C 0.54 9.60 7.38 -15.69 -0.12 9.49 16 8 O -0.55 -11.91 16.61 4.81 0.08 -11.83 16 9 N -0.48 -7.32 2.07 -116.68 -0.24 -7.57 16 10 C 0.06 0.89 5.17 -5.19 -0.03 0.86 16 11 C 0.49 9.65 7.31 -10.98 -0.08 9.57 16 12 O -0.54 -13.12 16.09 5.56 0.09 -13.03 16 13 N -0.70 -14.24 5.07 -54.93 -0.28 -14.52 16 14 C 0.26 6.69 2.56 -69.08 -0.18 6.51 16 15 H 0.05 1.45 7.57 -51.93 -0.39 1.06 16 16 C -0.15 -3.51 9.26 37.16 0.34 -3.17 16 17 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 20 N -0.88 -24.91 11.32 55.43 0.63 -24.28 16 21 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 0.68 8.07 -51.93 -0.42 0.26 16 27 H 0.08 0.86 6.12 -51.93 -0.32 0.54 16 28 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 29 H 0.41 1.73 8.75 45.56 0.40 2.13 16 30 H 0.15 1.81 8.00 -52.48 -0.42 1.39 16 31 H 0.12 1.12 6.47 -51.93 -0.34 0.79 16 32 H 0.13 1.80 7.36 -51.93 -0.38 1.42 16 33 H 0.39 6.60 8.54 -40.82 -0.35 6.25 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 318.73 15.07 4.80 4.80 Total: -1.00 -36.98 318.73 -5.65 -42.62 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.77 Total: 7.11 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -1.70 Total: 5.52 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.11 Total: -46.37 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.08 Total: -29.33 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.98 -5.65 -42.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124403155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.033 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds