Wall clock time and date at job start Tue Mar 31 2020 01:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86794 * 119.99968 * 2 1 4 4 H 1.48498 * 109.47603 * 270.00411 * 3 2 1 5 5 H 1.48505 * 109.47114 * 30.00357 * 3 2 1 6 6 H 1.48496 * 109.47162 * 149.99824 * 3 2 1 7 7 C 1.38952 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00066 * 359.97438 * 7 2 1 9 9 N 1.37098 * 119.99425 * 179.97438 * 7 2 1 10 10 C 1.34782 * 119.99654 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00076 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47284 * 179.97438 * 12 10 9 14 14 C 1.36052 * 123.28215 * 90.00271 * 13 12 10 15 15 O 1.21224 * 126.99760 * 347.23439 * 14 13 12 16 16 C 1.49591 * 106.00641 * 167.27256 * 14 13 12 17 17 H 1.08997 * 109.95526 * 275.19958 * 16 14 13 18 18 C 1.51314 * 119.42211 * 145.96679 * 16 14 13 19 19 C 1.54191 * 106.18263 * 181.63323 * 18 16 14 20 20 C 1.52476 * 111.87398 * 57.50579 * 19 18 16 21 21 C 1.53986 * 112.11808 * 306.95601 * 20 19 18 22 22 C 1.51037 * 106.71234 * 56.35022 * 21 20 19 23 23 H 1.09001 * 109.84017 * 53.43484 * 22 21 20 24 24 C 1.36054 * 123.28992 * 269.97890 * 13 12 10 25 25 O 1.21235 * 127.00230 * 347.38042 * 24 13 12 26 26 H 0.96997 * 120.00003 * 359.97438 * 1 2 3 27 27 H 0.97002 * 120.00307 * 0.02562 * 9 7 2 28 28 H 1.09007 * 109.47410 * 60.00034 * 12 10 9 29 29 H 1.09000 * 109.47443 * 300.00714 * 12 10 9 30 30 H 1.09007 * 110.10547 * 62.46855 * 18 16 14 31 31 H 1.08998 * 110.10296 * 300.80198 * 18 16 14 32 32 H 1.09005 * 108.99860 * 296.88863 * 19 18 16 33 33 H 1.09000 * 109.00311 * 178.12307 * 19 18 16 34 34 H 1.09003 * 108.94867 * 67.63771 * 20 19 18 35 35 H 1.08999 * 108.95131 * 186.36394 * 20 19 18 36 36 H 1.09000 * 109.99748 * 175.64951 * 21 20 19 37 37 H 1.09003 * 110.00193 * 297.04737 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5607 -2.3706 -0.0011 13 7 6.0491 -3.7517 -0.0005 14 6 6.2980 -4.4561 -1.1375 15 8 5.9667 -4.1611 -2.2657 16 6 7.0630 -5.6692 -0.7121 17 1 8.1249 -5.4336 -0.6415 18 6 6.8577 -6.9741 -1.4501 19 6 7.7506 -8.0131 -0.7426 20 6 7.4145 -8.1356 0.7396 21 6 7.4350 -6.7714 1.4535 22 6 6.4679 -5.8788 0.7123 23 1 5.4958 -6.3665 0.6396 24 6 6.2984 -4.4552 1.1371 25 8 6.3685 -4.0170 2.2654 26 1 -0.4850 0.8400 0.0004 27 1 3.8649 -0.3632 -0.0007 28 1 5.9242 -1.8567 0.8890 29 1 5.9241 -1.8566 -0.8910 30 1 7.1607 -6.8671 -2.4918 31 1 5.8123 -7.2769 -1.3920 32 1 8.7937 -7.7140 -0.8464 33 1 7.6121 -8.9835 -1.2193 34 1 6.4219 -8.5742 0.8424 35 1 8.1427 -8.7932 1.2145 36 1 7.1160 -6.8878 2.4892 37 1 8.4380 -6.3462 1.4166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126930456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:02 Heat of formation + Delta-G solvation = -98.890811 kcal Electronic energy + Delta-G solvation = -22325.398380 eV Core-core repulsion = 18874.921327 eV Total energy + Delta-G solvation = -3450.477053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.11107 -38.56967 -38.38176 -37.60683 -35.45721 -34.03902 -32.00614 -31.60336 -31.22143 -28.05184 -25.24641 -24.74994 -22.89514 -21.95351 -20.50923 -19.85503 -19.18443 -18.41767 -17.24906 -16.77473 -16.38578 -15.54694 -15.33638 -14.91158 -14.83425 -14.63863 -14.14545 -14.02528 -13.70951 -13.47280 -13.35488 -13.04495 -12.71073 -12.55882 -12.20594 -11.89523 -11.62759 -11.53117 -11.35938 -11.19494 -11.00343 -10.78508 -10.63786 -10.10278 -9.97630 -9.89658 -9.70137 -9.64703 -8.54121 -8.25468 -6.36107 -3.88145 1.68091 2.48154 2.76432 3.00669 3.05184 3.13542 3.57052 3.70833 4.06605 4.17226 4.21118 4.53951 4.63195 4.77671 4.81829 4.90055 5.00684 5.02947 5.12857 5.16454 5.41785 5.44729 5.46517 5.55771 5.57520 5.73553 5.75097 5.80755 5.83098 5.87190 5.94675 6.07805 6.88646 7.42196 7.48488 7.89963 8.05737 8.50603 8.87060 9.34042 9.69353 10.76497 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033505 B = 0.004279 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.507178 B = 6542.244587 C = 6705.177662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.120 0.880 9 N -0.579 5.579 10 C 0.434 3.566 11 O -0.570 6.570 12 C 0.086 3.914 13 N -0.569 5.569 14 C 0.545 3.455 15 O -0.465 6.465 16 C -0.129 4.129 17 H 0.121 0.879 18 C -0.098 4.098 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.096 4.096 22 C -0.131 4.131 23 H 0.126 0.874 24 C 0.552 3.448 25 O -0.474 6.474 26 H 0.275 0.725 27 H 0.372 0.628 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.231 -11.724 -0.065 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.435 4.435 8 H 0.138 0.862 9 N -0.218 5.218 10 C 0.219 3.781 11 O -0.453 6.453 12 C -0.040 4.040 13 N -0.314 5.314 14 C 0.333 3.667 15 O -0.334 6.334 16 C -0.150 4.150 17 H 0.138 0.862 18 C -0.136 4.136 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.134 4.134 22 C -0.152 4.152 23 H 0.144 0.856 24 C 0.341 3.659 25 O -0.344 6.344 26 H 0.085 0.915 27 H 0.205 0.795 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 18.447 -11.872 -0.072 21.938 hybrid contribution 0.314 1.670 0.015 1.699 sum 18.761 -10.202 -0.057 21.356 Atomic orbital electron populations 1.69624 1.05678 1.27693 1.48583 1.25054 0.95531 0.98084 0.97301 0.86661 0.79861 0.83842 0.79035 1.19422 1.19986 1.19352 1.19430 0.78968 0.96766 1.48368 0.86231 1.42122 1.07687 1.05943 1.66027 1.19846 0.88195 0.85044 0.85027 1.90561 1.69174 1.30969 1.54593 1.21499 0.95300 0.81915 1.05249 1.47416 1.60125 1.14979 1.08858 1.20546 0.77725 0.84722 0.83661 1.90751 1.50142 1.72164 1.20316 1.22139 1.01460 0.94993 0.96446 0.86175 1.21307 1.01469 0.91378 0.99429 1.21633 0.99619 0.99164 0.95164 1.21605 1.02580 0.96517 0.95102 1.21186 0.98253 0.94321 0.99604 1.22114 1.03257 0.93972 0.95902 0.85620 1.20447 0.73309 0.88683 0.83437 1.90732 1.46526 1.77266 1.19898 0.91457 0.79460 0.87285 0.87622 0.90164 0.90445 0.91753 0.91233 0.91516 0.91279 0.90136 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 2 C 0.04 1.22 5.50 -17.46 -0.10 1.12 16 3 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 7 C -0.31 -8.84 10.16 -14.93 -0.15 -8.99 16 8 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 9 N -0.58 -14.19 5.09 -10.97 -0.06 -14.24 16 10 C 0.43 10.30 7.85 -10.99 -0.09 10.21 16 11 O -0.57 -15.81 16.01 5.55 0.09 -15.72 16 12 C 0.09 1.52 6.21 -5.20 -0.03 1.48 16 13 N -0.57 -9.47 2.16 -116.81 -0.25 -9.73 16 14 C 0.54 8.49 7.72 -10.94 -0.08 8.41 16 15 O -0.46 -8.75 17.83 5.61 0.10 -8.65 16 16 C -0.13 -1.37 2.40 -91.67 -0.22 -1.59 16 17 H 0.12 0.98 7.85 -51.93 -0.41 0.57 16 18 C -0.10 -0.85 5.86 -26.96 -0.16 -1.01 16 19 C -0.12 -0.74 5.80 -26.38 -0.15 -0.90 16 20 C -0.12 -0.78 5.80 -26.48 -0.15 -0.94 16 21 C -0.10 -0.79 5.84 -27.20 -0.16 -0.95 16 22 C -0.13 -1.51 2.38 -91.83 -0.22 -1.73 16 23 H 0.13 1.52 7.79 -51.93 -0.40 1.11 16 24 C 0.55 8.65 7.75 -10.97 -0.08 8.57 16 25 O -0.47 -8.62 17.68 5.60 0.10 -8.52 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 28 H 0.11 1.69 7.89 -51.93 -0.41 1.28 16 29 H 0.11 1.61 8.08 -51.93 -0.42 1.19 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.53 7.94 -51.93 -0.41 0.12 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -35.86 312.22 -5.64 -41.50 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.79 Total: 7.17 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: -1.60 Total: 13.70 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.47 Total: -48.96 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: 0.29 Total: -32.89 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.86 -5.64 -41.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126930456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.386 kcal (2) G-P(sol) polarization free energy of solvation -35.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds