Wall clock time and date at job start Tue Mar 31 2020 01:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86794 * 119.99968 * 2 1 4 4 H 1.48498 * 109.47603 * 270.00411 * 3 2 1 5 5 H 1.48505 * 109.47114 * 30.00357 * 3 2 1 6 6 H 1.48496 * 109.47162 * 149.99824 * 3 2 1 7 7 C 1.38952 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00066 * 359.97438 * 7 2 1 9 9 N 1.37098 * 119.99425 * 179.97438 * 7 2 1 10 10 C 1.34782 * 119.99654 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00076 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47284 * 179.97438 * 12 10 9 14 14 C 1.36052 * 123.28215 * 90.00271 * 13 12 10 15 15 O 1.21224 * 126.99760 * 347.23439 * 14 13 12 16 16 C 1.49591 * 106.00641 * 167.27256 * 14 13 12 17 17 H 1.08997 * 109.95526 * 275.19958 * 16 14 13 18 18 C 1.51314 * 119.42211 * 145.96679 * 16 14 13 19 19 C 1.54191 * 106.18263 * 181.63323 * 18 16 14 20 20 C 1.52476 * 111.87398 * 57.50579 * 19 18 16 21 21 C 1.53986 * 112.11808 * 306.95601 * 20 19 18 22 22 C 1.51037 * 106.71234 * 56.35022 * 21 20 19 23 23 H 1.09001 * 109.84017 * 53.43484 * 22 21 20 24 24 C 1.36054 * 123.28992 * 269.97890 * 13 12 10 25 25 O 1.21235 * 127.00230 * 347.38042 * 24 13 12 26 26 H 0.96997 * 120.00003 * 359.97438 * 1 2 3 27 27 H 0.97002 * 120.00307 * 0.02562 * 9 7 2 28 28 H 1.09007 * 109.47410 * 60.00034 * 12 10 9 29 29 H 1.09000 * 109.47443 * 300.00714 * 12 10 9 30 30 H 1.09007 * 110.10547 * 62.46855 * 18 16 14 31 31 H 1.08998 * 110.10296 * 300.80198 * 18 16 14 32 32 H 1.09005 * 108.99860 * 296.88863 * 19 18 16 33 33 H 1.09000 * 109.00311 * 178.12307 * 19 18 16 34 34 H 1.09003 * 108.94867 * 67.63771 * 20 19 18 35 35 H 1.08999 * 108.95131 * 186.36394 * 20 19 18 36 36 H 1.09000 * 109.99748 * 175.64951 * 21 20 19 37 37 H 1.09003 * 110.00193 * 297.04737 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5607 -2.3706 -0.0011 13 7 6.0491 -3.7517 -0.0005 14 6 6.2980 -4.4561 -1.1375 15 8 5.9667 -4.1611 -2.2657 16 6 7.0630 -5.6692 -0.7121 17 1 8.1249 -5.4336 -0.6415 18 6 6.8577 -6.9741 -1.4501 19 6 7.7506 -8.0131 -0.7426 20 6 7.4145 -8.1356 0.7396 21 6 7.4350 -6.7714 1.4535 22 6 6.4679 -5.8788 0.7123 23 1 5.4958 -6.3665 0.6396 24 6 6.2984 -4.4552 1.1371 25 8 6.3685 -4.0170 2.2654 26 1 -0.4850 0.8400 0.0004 27 1 3.8649 -0.3632 -0.0007 28 1 5.9242 -1.8567 0.8890 29 1 5.9241 -1.8566 -0.8910 30 1 7.1607 -6.8671 -2.4918 31 1 5.8123 -7.2769 -1.3920 32 1 8.7937 -7.7140 -0.8464 33 1 7.6121 -8.9835 -1.2193 34 1 6.4219 -8.5742 0.8424 35 1 8.1427 -8.7932 1.2145 36 1 7.1160 -6.8878 2.4892 37 1 8.4380 -6.3462 1.4166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126930456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:01 Heat of formation + Delta-G solvation = -125.683991 kcal Electronic energy + Delta-G solvation = -22326.560219 eV Core-core repulsion = 18874.921327 eV Total energy + Delta-G solvation = -3451.638892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.26071 -40.35196 -39.69468 -38.65595 -36.80954 -36.08779 -33.92770 -32.85268 -31.93647 -29.42372 -26.61344 -26.30397 -23.90016 -22.92168 -21.65868 -21.18491 -20.79577 -20.08206 -18.49541 -18.13549 -17.97762 -17.00269 -16.56739 -16.44531 -15.99843 -15.91500 -15.72727 -15.26134 -14.86665 -14.72516 -14.58665 -14.29706 -14.26291 -13.84669 -13.46944 -13.24881 -12.96703 -12.50807 -12.46496 -12.24977 -12.06544 -12.05803 -11.85288 -11.63325 -11.44064 -11.36675 -10.90043 -10.88611 -10.39065 -10.37188 -8.50261 -6.13207 0.44719 1.20466 1.26420 1.30140 1.40978 1.57569 1.73175 2.16885 2.72098 2.80875 3.04583 3.24010 3.28697 3.82724 3.92408 4.02612 4.05477 4.11957 4.13999 4.18594 4.33979 4.38256 4.44682 4.47829 4.82753 4.87616 5.11371 5.17818 5.23177 5.33481 5.38786 5.42615 5.55217 5.63814 5.80681 6.19887 6.42648 6.65521 6.73489 7.21889 7.74149 8.66890 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033505 B = 0.004279 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.507178 B = 6542.244587 C = 6705.177662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.965 3.035 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.231 1.231 7 C -0.336 4.336 8 H 0.054 0.946 9 N -0.577 5.577 10 C 0.429 3.571 11 O -0.620 6.620 12 C 0.091 3.909 13 N -0.580 5.580 14 C 0.537 3.463 15 O -0.504 6.504 16 C -0.114 4.114 17 H 0.157 0.843 18 C -0.100 4.100 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.091 4.091 22 C -0.125 4.125 23 H 0.114 0.886 24 C 0.545 3.455 25 O -0.503 6.503 26 H 0.282 0.718 27 H 0.393 0.607 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.076 -11.328 0.015 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.209 4.209 3 Si 0.784 3.216 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.154 1.154 7 C -0.465 4.465 8 H 0.073 0.927 9 N -0.218 5.218 10 C 0.216 3.784 11 O -0.505 6.505 12 C -0.034 4.034 13 N -0.324 5.324 14 C 0.329 3.671 15 O -0.376 6.376 16 C -0.134 4.134 17 H 0.174 0.826 18 C -0.138 4.138 19 C -0.148 4.148 20 C -0.155 4.155 21 C -0.129 4.129 22 C -0.146 4.146 23 H 0.132 0.868 24 C 0.337 3.663 25 O -0.375 6.375 26 H 0.092 0.908 27 H 0.229 0.771 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 22.322 -11.502 0.013 25.112 hybrid contribution -0.997 1.450 -0.011 1.760 sum 21.325 -10.052 0.002 23.576 Atomic orbital electron populations 1.69795 1.08147 1.29601 1.49113 1.26158 0.96530 1.02801 0.95447 0.85375 0.79589 0.76475 0.80210 1.17836 1.19461 1.15384 1.18994 0.81106 0.95145 1.51214 0.92749 1.41928 1.06111 1.07311 1.66450 1.21079 0.90942 0.83960 0.82417 1.90532 1.71162 1.32783 1.56055 1.21515 0.90134 0.83782 1.08003 1.47737 1.59943 1.14855 1.09878 1.21491 0.77116 0.85743 0.82783 1.90726 1.51836 1.73331 1.21736 1.22274 1.02312 0.93504 0.95342 0.82581 1.21391 1.01377 0.91030 0.99967 1.21611 0.99867 0.98804 0.94516 1.21610 1.03032 0.95537 0.95289 1.21267 0.98039 0.94501 0.99096 1.22175 1.03866 0.91647 0.96914 0.86779 1.21194 0.72160 0.90218 0.82731 1.90706 1.47850 1.78109 1.20852 0.90802 0.77124 0.84532 0.84622 0.89681 0.92093 0.89765 0.89922 0.92188 0.89054 0.90588 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.48 13.96 21.67 0.30 -56.18 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 3 Si 0.96 39.25 27.74 68.60 1.90 41.15 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.23 -7.93 6.52 99.48 0.65 -7.28 16 7 C -0.34 -20.29 10.16 84.04 0.85 -19.44 16 8 H 0.05 3.91 7.39 -2.91 -0.02 3.89 16 9 N -0.58 -28.56 5.09 -306.99 -1.56 -30.13 16 10 C 0.43 20.79 7.85 87.65 0.69 21.47 16 11 O -0.62 -36.20 16.01 -3.06 -0.05 -36.25 16 12 C 0.09 3.12 6.21 85.63 0.53 3.65 16 13 N -0.58 -18.90 2.16 -758.83 -1.64 -20.54 16 14 C 0.54 16.38 7.72 87.11 0.67 17.05 16 15 O -0.50 -19.05 17.83 -2.86 -0.05 -19.10 16 16 C -0.11 -2.17 2.40 -11.47 -0.03 -2.19 16 17 H 0.16 1.91 7.85 -2.39 -0.02 1.89 16 18 C -0.10 -1.53 5.86 30.45 0.18 -1.35 16 19 C -0.11 -0.97 5.80 30.82 0.18 -0.79 16 20 C -0.12 -1.13 5.80 30.75 0.18 -0.95 16 21 C -0.09 -1.25 5.84 30.29 0.18 -1.08 16 22 C -0.13 -2.71 2.38 -11.58 -0.03 -2.74 16 23 H 0.11 2.78 7.79 -2.39 -0.02 2.76 16 24 C 0.55 16.72 7.75 87.09 0.67 17.39 16 25 O -0.50 -18.01 17.68 -2.89 -0.05 -18.07 16 26 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.39 15.93 5.76 -92.71 -0.53 15.40 16 28 H 0.14 3.93 7.89 -2.38 -0.02 3.91 16 29 H 0.14 3.83 8.08 -2.39 -0.02 3.81 16 30 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.06 1.14 7.89 -2.39 -0.02 1.12 16 32 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 0.95 7.94 -2.39 -0.02 0.93 16 Total: -1.00 -85.35 312.22 3.90 -81.45 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.51 Total: 26.71 kcal Atomic # 6 Polarization: 26.40 SS G_CDS: 4.55 Total: 30.95 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -2.90 Total: -106.84 kcal Atomic # 8 Polarization: -73.26 SS G_CDS: -0.15 Total: -73.41 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 1.90 Total: 41.15 kcal Total: -85.35 3.90 -81.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126930456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.238 kcal (2) G-P(sol) polarization free energy of solvation -85.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds