Wall clock time and date at job start Tue Mar 31 2020 02:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00093 * 2 1 4 4 O 1.20829 * 120.00239 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00236 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47360 * 180.02562 * 5 3 2 7 7 C 1.36882 * 119.99563 * 268.54257 * 6 5 3 8 8 H 1.07994 * 119.99496 * 127.81868 * 7 6 5 9 9 C 1.39003 * 120.00054 * 307.81787 * 7 6 5 10 10 N 1.31397 * 120.00002 * 350.12803 * 9 7 6 11 11 Si 1.86802 * 119.99995 * 170.13302 * 9 7 6 12 12 H 1.48499 * 109.47168 * 89.99500 * 11 9 7 13 13 H 1.48498 * 109.47050 * 209.99908 * 11 9 7 14 14 H 1.48498 * 109.46771 * 329.99452 * 11 9 7 15 15 C 1.34773 * 120.00050 * 88.54506 * 6 5 3 16 16 O 1.21734 * 120.00057 * 3.67634 * 15 6 5 17 17 C 1.46548 * 119.99745 * 183.68592 * 15 6 5 18 18 N 1.37676 * 126.24036 * 353.25897 * 17 15 6 19 19 H 0.97001 * 125.68228 * 0.04285 * 18 17 15 20 20 C 1.35584 * 108.63188 * 180.02562 * 18 17 15 21 21 C 1.50705 * 125.55608 * 179.97438 * 20 18 17 22 22 C 1.35481 * 108.88778 * 0.02562 * 20 18 17 23 23 C 1.37995 * 126.24155 * 173.57788 * 17 15 6 24 24 C 1.50700 * 126.45834 * 359.97149 * 23 17 15 25 25 H 1.08997 * 109.47074 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47297 * 300.00112 * 1 2 3 27 27 H 1.09001 * 109.47031 * 59.99817 * 1 2 3 28 28 H 1.09002 * 109.47076 * 60.00070 * 5 3 2 29 29 H 1.09001 * 109.47339 * 300.00479 * 5 3 2 30 30 H 0.97007 * 119.99517 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.47257 * 270.01868 * 21 20 18 32 32 H 1.09002 * 109.46945 * 30.01841 * 21 20 18 33 33 H 1.09002 * 109.47010 * 150.01807 * 21 20 18 34 34 H 1.08000 * 126.06583 * 179.97438 * 22 20 18 35 35 H 1.09005 * 109.46980 * 270.19918 * 24 23 17 36 36 H 1.09001 * 109.47381 * 30.19530 * 24 23 17 37 37 H 1.08996 * 109.47834 * 150.20221 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.2051 3.3278 -1.1838 8 1 3.7187 4.2711 -1.3833 9 6 5.0580 2.7716 -2.1300 10 7 5.7977 1.7316 -1.8172 11 14 5.1528 3.5029 -3.8464 12 1 6.2030 4.5523 -3.8800 13 1 5.4890 2.4347 -4.8216 14 1 3.8418 4.1029 -4.2018 15 6 4.1439 3.3341 1.1681 16 8 4.0106 2.7404 2.2224 17 6 4.4806 4.7604 1.1677 18 7 4.7874 5.5240 0.0640 19 1 4.8172 5.2075 -0.8525 20 6 5.0405 6.7922 0.4713 21 6 5.4158 7.9427 -0.4268 22 6 4.9022 6.8562 1.8175 23 6 4.5539 5.5816 2.2743 24 6 4.3028 5.1808 3.7052 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.9564 0.7806 -0.8892 29 1 3.9557 0.7809 0.8908 30 1 6.3932 1.3438 -2.4775 31 1 6.5002 7.9848 -0.5295 32 1 4.9632 7.8001 -1.4081 33 1 5.0555 8.8752 0.0075 34 1 5.0405 7.7351 2.4298 35 1 3.2471 5.3159 3.9404 36 1 4.5745 4.1341 3.8423 37 1 4.9051 5.8023 4.3677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127091161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:01 Heat of formation + Delta-G solvation = -89.182938 kcal Electronic energy + Delta-G solvation = -22694.855905 eV Core-core repulsion = 19244.799817 eV Total energy + Delta-G solvation = -3450.056088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.23054 -41.45066 -39.78128 -37.54175 -36.82174 -33.79922 -33.41601 -32.40544 -30.39064 -28.55232 -28.00681 -27.56381 -25.93075 -22.81538 -21.62426 -21.17662 -20.43901 -19.42810 -18.75429 -18.07095 -17.46428 -17.08273 -16.77803 -16.46925 -15.95723 -15.86455 -14.97679 -14.71193 -14.47179 -14.25024 -14.16187 -13.81828 -13.74376 -13.59502 -13.42173 -13.09635 -13.00787 -12.94028 -12.89562 -12.79147 -12.61993 -12.24944 -12.15903 -11.81912 -11.61948 -11.19022 -10.64273 -9.64268 -9.45774 -8.73143 -8.48594 -6.49699 0.74184 1.19772 1.34025 1.40455 1.51090 1.67154 1.95090 2.17146 2.51387 2.62038 2.88229 3.03847 4.00347 4.14339 4.19240 4.27742 4.29191 4.37823 4.48714 4.53524 4.62159 4.68911 4.73846 4.87332 4.94603 4.97117 5.14515 5.16713 5.21461 5.28474 5.29564 5.63449 5.84185 6.08191 6.15122 6.30618 6.76260 6.84026 6.90760 7.33064 7.77046 8.53735 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.008369 C = 0.005791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.890809 B = 3344.925169 C = 4833.884361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.450 3.550 4 O -0.534 6.534 5 C 0.131 3.869 6 N -0.438 5.438 7 C -0.376 4.376 8 H 0.084 0.916 9 C 0.021 3.979 10 N -0.875 5.875 11 Si 0.973 3.027 12 H -0.255 1.255 13 H -0.271 1.271 14 H -0.263 1.263 15 C 0.550 3.450 16 O -0.612 6.612 17 C -0.056 4.056 18 N -0.520 5.520 19 H 0.426 0.574 20 C 0.025 3.975 21 C -0.082 4.082 22 C -0.220 4.220 23 C -0.122 4.122 24 C -0.076 4.076 25 H 0.140 0.860 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.283 0.717 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.164 0.836 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 5.022 -1.533 5.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.293 3.707 4 O -0.423 6.423 5 C 0.006 3.994 6 N -0.157 5.157 7 C -0.503 4.503 8 H 0.101 0.899 9 C -0.187 4.187 10 N -0.508 5.508 11 Si 0.794 3.206 12 H -0.179 1.179 13 H -0.195 1.195 14 H -0.187 1.187 15 C 0.343 3.657 16 O -0.498 6.498 17 C -0.171 4.171 18 N -0.124 5.124 19 H 0.276 0.724 20 C -0.094 4.094 21 C -0.139 4.139 22 C -0.244 4.244 23 C -0.131 4.131 24 C -0.133 4.133 25 H 0.158 0.842 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.145 0.855 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.181 0.819 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.278 4.721 -1.316 5.404 hybrid contribution -0.279 -0.385 -1.138 1.233 sum -2.557 4.336 -2.454 5.600 Atomic orbital electron populations 1.23533 0.75133 1.05761 1.02078 1.86512 1.24977 1.32623 1.84079 1.25056 0.93311 0.81378 0.70923 1.90564 1.67571 1.37586 1.46553 1.20839 0.85078 0.87662 1.05870 1.42857 1.58615 1.09002 1.05184 1.19378 1.28168 1.08058 0.94722 0.89902 1.26467 0.92481 0.96293 1.03413 1.69904 1.21797 1.22425 1.36674 0.85242 0.79615 0.79057 0.76695 1.17914 1.19534 1.18680 1.17935 0.77884 0.86200 0.83644 1.90582 1.58098 1.68833 1.32293 1.20089 1.16993 0.91691 0.88281 1.43515 1.50612 1.07973 1.10252 0.72403 1.21386 1.05202 0.86874 0.95977 1.20485 1.02658 0.93497 0.97244 1.20710 1.12810 0.97348 0.93528 1.20249 1.04519 0.93760 0.94608 1.20189 1.01033 1.01430 0.90669 0.84216 0.92654 0.92279 0.85459 0.88354 0.90706 0.89669 0.91246 0.87763 0.81867 0.92417 0.92955 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.99 16 2 O -0.37 -13.94 10.57 -51.42 -0.54 -14.48 16 3 C 0.45 20.89 8.02 71.24 0.57 21.46 16 4 O -0.53 -27.55 16.17 21.95 0.35 -27.20 16 5 C 0.13 6.39 5.57 85.63 0.48 6.87 16 6 N -0.44 -23.02 1.89 -644.27 -1.22 -24.24 16 7 C -0.38 -18.76 6.65 84.09 0.56 -18.20 16 8 H 0.08 4.10 5.94 -2.91 -0.02 4.09 16 9 C 0.02 0.99 5.12 84.94 0.43 1.42 16 10 N -0.87 -43.22 11.90 21.67 0.26 -42.96 16 11 Si 0.97 35.83 29.56 68.60 2.03 37.86 16 12 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 13 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 14 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 15 C 0.55 29.92 7.58 86.41 0.65 30.58 16 16 O -0.61 -34.87 14.37 -4.46 -0.06 -34.93 16 17 C -0.06 -2.74 6.77 40.34 0.27 -2.46 16 18 N -0.52 -21.98 5.36 -171.88 -0.92 -22.90 16 19 H 0.43 18.03 5.09 -92.71 -0.47 17.55 16 20 C 0.03 0.86 7.13 41.34 0.29 1.16 16 21 C -0.08 -1.86 10.41 71.24 0.74 -1.11 16 22 C -0.22 -7.68 10.65 22.01 0.23 -7.44 16 23 C -0.12 -5.21 6.21 -19.54 -0.12 -5.34 16 24 C -0.08 -2.91 9.90 71.24 0.71 -2.20 16 25 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 27 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 28 H 0.13 6.19 6.28 -2.39 -0.01 6.17 16 29 H 0.10 4.80 7.41 -2.39 -0.02 4.78 16 30 H 0.28 12.95 8.31 -92.70 -0.77 12.18 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.05 2.27 6.39 -2.39 -0.02 2.26 16 37 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -67.89 318.29 6.55 -61.34 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: 0.63 Total: 40.80 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: 6.02 Total: 26.71 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -1.88 Total: -90.10 kcal Atomic # 8 Polarization: -76.36 SS G_CDS: -0.25 Total: -76.61 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Total: -67.89 6.55 -61.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127091161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.844 kcal (2) G-P(sol) polarization free energy of solvation -67.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds