Wall clock time and date at job start Tue Mar 31 2020 01:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47437 * 11.97105 * 3 2 1 5 5 N 1.46493 * 109.47284 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00160 * 269.99973 * 5 4 3 7 7 C 1.50704 * 109.47000 * 270.00110 * 6 5 4 8 8 H 1.07992 * 119.99949 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99524 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99597 * 180.02562 * 9 7 6 11 11 Si 1.86792 * 120.00458 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47334 * 89.99942 * 11 9 7 13 13 H 1.48503 * 109.47319 * 209.99674 * 11 9 7 14 14 H 1.48496 * 109.47326 * 330.00105 * 11 9 7 15 15 C 1.34775 * 120.00235 * 89.99492 * 5 4 3 16 16 O 1.21286 * 120.00114 * 179.97438 * 15 5 4 17 17 C 1.50698 * 119.99943 * 0.02562 * 15 5 4 18 18 C 1.52999 * 109.47135 * 179.97438 * 17 15 5 19 19 H 1.08994 * 110.91153 * 57.12439 * 18 17 15 20 20 C 1.54263 * 110.84503 * 293.53931 * 18 17 15 21 21 O 1.45375 * 106.63218 * 226.61879 * 20 18 17 22 22 C 1.34005 * 111.49248 * 357.73052 * 21 20 18 23 23 O 1.20821 * 125.69237 * 199.61924 * 22 21 20 24 24 C 1.51659 * 108.60481 * 19.65569 * 22 21 20 25 25 H 1.08998 * 109.47277 * 251.96717 * 3 2 1 26 26 H 1.09006 * 109.46554 * 131.96712 * 3 2 1 27 27 H 1.08998 * 109.47205 * 59.99567 * 4 3 2 28 28 H 1.09001 * 109.46979 * 300.00101 * 4 3 2 29 29 H 1.09010 * 109.47044 * 29.99943 * 6 5 4 30 30 H 1.08993 * 109.47520 * 149.99654 * 6 5 4 31 31 H 0.97001 * 120.00324 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.47339 * 59.99099 * 17 15 5 33 33 H 1.09008 * 109.46655 * 299.99597 * 17 15 5 34 34 H 1.09001 * 110.02578 * 107.32666 * 20 18 17 35 35 H 1.09004 * 110.03002 * 345.91271 * 20 18 17 36 36 H 1.08997 * 110.71383 * 89.85132 * 24 22 21 37 37 H 1.09005 * 110.70452 * 212.91899 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4102 -0.2992 5 7 4.5837 -1.4094 -0.2998 6 6 5.3155 -1.1460 -1.5413 7 6 5.5671 -2.4457 -2.2614 8 1 5.2173 -3.3749 -1.8367 9 6 6.2440 -2.4483 -3.4626 10 7 6.4631 -3.5825 -4.0914 11 14 6.8485 -0.8410 -4.1977 12 1 8.2219 -0.5586 -3.7086 13 1 6.8630 -0.9485 -5.6788 14 1 5.9414 0.2618 -3.7902 15 6 5.2582 -1.6508 0.8418 16 8 6.4710 -1.6506 0.8412 17 6 4.5054 -1.9222 2.1187 18 6 5.5003 -2.1631 3.2559 19 1 6.1727 -1.3131 3.3711 20 6 6.2952 -3.4645 3.0233 21 8 6.2827 -4.1905 4.2827 22 6 5.6467 -3.5017 5.2402 23 8 5.7603 -3.6791 6.4299 24 6 4.7598 -2.4629 4.5810 25 1 2.9712 0.3189 0.9772 26 1 2.9710 0.6881 -0.7642 27 1 2.7555 -1.7285 -1.2763 28 1 2.7557 -2.0976 0.4649 29 1 4.7258 -0.4862 -2.1777 30 1 6.2677 -0.6698 -1.3077 31 1 6.9396 -3.5845 -4.9363 32 1 3.8794 -2.8053 1.9909 33 1 3.8781 -1.0640 2.3600 34 1 7.3207 -3.2295 2.7381 35 1 5.8179 -4.0595 2.2446 36 1 3.7684 -2.8711 4.3846 37 1 4.6911 -1.5672 5.1983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160931240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:40 Heat of formation + Delta-G solvation = -92.794793 kcal Electronic energy + Delta-G solvation = -21692.499914 eV Core-core repulsion = 18242.287204 eV Total energy + Delta-G solvation = -3450.212710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11535 -39.54866 -37.57355 -37.02977 -35.55825 -34.34075 -32.86750 -31.15502 -29.55260 -28.12675 -26.86739 -24.20332 -22.87937 -21.50923 -20.98455 -18.65237 -17.95532 -17.39421 -16.97193 -16.89865 -16.61821 -16.15574 -15.71899 -15.12358 -14.82064 -14.33903 -14.15704 -13.92944 -13.71179 -13.41628 -13.08294 -12.76349 -12.61682 -12.56054 -12.39674 -12.18835 -11.93664 -11.72355 -11.52558 -11.38773 -11.17401 -10.94660 -10.65861 -10.50083 -10.31350 -10.28333 -9.69948 -9.30805 -8.71089 -8.07431 -6.20566 -4.21158 1.94282 2.57056 2.66651 3.00258 3.19168 3.20417 3.24226 3.27092 3.36727 3.79582 3.90534 4.13557 4.27997 4.43667 4.55281 4.78329 4.88494 4.93972 5.06065 5.11595 5.14689 5.24021 5.34236 5.36257 5.48800 5.61679 5.75356 5.85572 5.90970 6.46421 6.74328 6.74599 7.02892 7.34769 7.42748 7.45617 7.90585 8.30793 8.62654 8.82205 9.38497 10.92493 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.005299 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.020151 B = 5283.049081 C = 6950.051770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.214 3.786 3 C -0.050 4.050 4 C 0.115 3.885 5 N -0.590 5.590 6 C 0.214 3.786 7 C -0.534 4.534 8 H 0.075 0.925 9 C 0.074 3.926 10 N -0.894 5.894 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.507 3.493 16 O -0.531 6.531 17 C -0.137 4.137 18 C -0.104 4.104 19 H 0.107 0.893 20 C 0.064 3.936 21 O -0.352 6.352 22 C 0.486 3.514 23 O -0.464 6.464 24 C -0.186 4.186 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.266 0.734 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.609 6.724 11.541 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.104 4.104 3 C -0.092 4.092 4 C -0.011 4.011 5 N -0.321 5.321 6 C 0.094 3.906 7 C -0.572 4.572 8 H 0.093 0.907 9 C -0.129 4.129 10 N -0.532 5.532 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.294 3.706 16 O -0.407 6.407 17 C -0.177 4.177 18 C -0.123 4.123 19 H 0.125 0.875 20 C -0.010 4.010 21 O -0.269 6.269 22 C 0.327 3.673 23 O -0.349 6.349 24 C -0.224 4.224 25 H 0.125 0.875 26 H 0.133 0.867 27 H 0.116 0.884 28 H 0.099 0.901 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.134 0.866 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.396 6.354 11.905 14.934 hybrid contribution 0.615 0.839 -0.797 1.310 sum -5.782 7.193 11.109 14.442 Atomic orbital electron populations 1.81238 1.13021 1.08426 1.09062 1.29043 0.95051 0.93303 0.93030 1.19882 0.81528 1.01920 1.05840 1.21363 0.81636 0.93294 1.04789 1.47890 1.05024 1.69163 1.10015 1.19750 0.92536 0.97755 0.80564 1.21268 1.37551 0.93119 1.05309 0.90651 1.24855 0.95163 0.96199 0.96656 1.69885 1.41043 1.25624 1.16628 0.86877 0.80131 0.84136 0.78657 1.19886 1.21090 1.19017 1.20292 0.88145 0.77570 0.84606 1.90706 1.13685 1.50725 1.85629 1.21841 0.98613 1.04505 0.92737 1.22229 0.97330 0.99708 0.92992 0.87470 1.24155 1.03885 0.91148 0.81763 1.86791 1.72058 1.45936 1.22077 1.23142 0.78361 0.80041 0.85768 1.90706 1.64022 1.67121 1.13008 1.23179 1.00894 1.00854 0.97479 0.87456 0.86660 0.88422 0.90150 0.94985 0.94177 0.92419 0.88282 0.88213 0.87361 0.88256 0.86554 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.73 18.54 42.15 0.78 -4.95 16 2 C 0.21 2.13 15.43 -20.76 -0.32 1.81 16 3 C -0.05 -0.39 6.03 -29.52 -0.18 -0.56 16 4 C 0.12 1.21 5.17 -4.05 -0.02 1.19 16 5 N -0.59 -8.85 2.46 -175.06 -0.43 -9.28 16 6 C 0.21 4.28 4.23 -5.19 -0.02 4.26 16 7 C -0.53 -13.51 9.94 -34.44 -0.34 -13.85 16 8 H 0.08 2.11 8.06 -52.49 -0.42 1.68 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 10 N -0.89 -25.81 13.96 55.43 0.77 -25.04 16 11 Si 0.88 19.67 27.47 -169.99 -4.67 15.00 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 13 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.27 -5.46 6.54 56.52 0.37 -5.09 16 15 C 0.51 7.28 7.44 -10.99 -0.08 7.20 16 16 O -0.53 -9.87 14.65 5.55 0.08 -9.79 16 17 C -0.14 -1.19 3.53 -27.88 -0.10 -1.29 16 18 C -0.10 -0.94 2.70 -89.05 -0.24 -1.18 16 19 H 0.11 0.99 8.06 -51.93 -0.42 0.57 16 20 C 0.06 0.74 6.47 37.82 0.24 0.99 16 21 O -0.35 -4.66 10.95 -38.28 -0.42 -5.08 16 22 C 0.49 6.01 8.62 36.48 0.31 6.33 16 23 O -0.46 -7.26 18.00 -18.37 -0.33 -7.59 16 24 C -0.19 -1.45 6.51 -26.50 -0.17 -1.62 16 25 H 0.11 0.56 7.22 -51.93 -0.37 0.18 16 26 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.10 1.17 8.07 -51.93 -0.42 0.75 16 28 H 0.08 0.65 6.44 -51.93 -0.33 0.32 16 29 H 0.03 0.60 7.13 -51.92 -0.37 0.23 16 30 H 0.04 0.87 6.85 -51.93 -0.36 0.51 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.10 0.73 7.36 -51.93 -0.38 0.35 16 33 H 0.10 0.55 7.19 -51.92 -0.37 0.18 16 34 H 0.11 1.36 7.99 -51.93 -0.41 0.94 16 35 H 0.10 1.16 7.72 -51.93 -0.40 0.76 16 36 H 0.12 0.69 7.91 -51.93 -0.41 0.27 16 37 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 322.90 15.07 4.87 4.87 Total: -1.00 -34.26 322.90 -5.05 -39.31 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -4.69 Total: -2.60 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.02 Total: 5.15 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 1.13 Total: -39.27 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.67 Total: -22.46 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.26 -5.05 -39.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160931240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.486 kcal (2) G-P(sol) polarization free energy of solvation -34.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds