Wall clock time and date at job start Tue Mar 31 2020 01:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46970 * 345.81254 * 3 2 1 5 5 N 1.46500 * 109.46706 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00495 * 270.00051 * 5 4 3 7 7 C 1.50699 * 109.47130 * 270.00506 * 6 5 4 8 8 H 1.08007 * 119.99888 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00226 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99828 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00362 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46829 * 89.99862 * 11 9 7 13 13 H 1.48495 * 109.47424 * 210.00140 * 11 9 7 14 14 H 1.48503 * 109.46953 * 330.00406 * 11 9 7 15 15 C 1.34780 * 119.99755 * 90.00000 * 5 4 3 16 16 O 1.21285 * 119.99855 * 179.97438 * 15 5 4 17 17 C 1.50695 * 120.00207 * 0.02562 * 15 5 4 18 18 C 1.53000 * 109.47187 * 179.97438 * 17 15 5 19 19 H 1.09007 * 110.93078 * 308.63721 * 18 17 15 20 20 C 1.54570 * 110.87079 * 72.27532 * 18 17 15 21 21 O 1.45834 * 104.44516 * 145.01250 * 20 18 17 22 22 C 1.34058 * 109.90625 * 329.39623 * 21 20 18 23 23 O 1.20827 * 125.09615 * 200.83408 * 22 21 20 24 24 C 1.51336 * 109.81144 * 20.83417 * 22 21 20 25 25 H 1.09000 * 109.46822 * 225.81426 * 3 2 1 26 26 H 1.09002 * 109.46954 * 105.81334 * 3 2 1 27 27 H 1.09000 * 109.47208 * 60.00408 * 4 3 2 28 28 H 1.09002 * 109.47348 * 299.99839 * 4 3 2 29 29 H 1.09002 * 109.46781 * 29.99887 * 6 5 4 30 30 H 1.08988 * 109.47501 * 149.99857 * 6 5 4 31 31 H 0.97000 * 120.00215 * 179.97438 * 10 9 7 32 32 H 1.09002 * 109.47242 * 59.99832 * 17 15 5 33 33 H 1.08996 * 109.47150 * 299.99936 * 17 15 5 34 34 H 1.09004 * 110.43368 * 26.27132 * 20 18 17 35 35 H 1.08995 * 110.43986 * 263.75780 * 20 18 17 36 36 H 1.08998 * 110.36710 * 116.52289 * 24 22 21 37 37 H 1.09005 * 110.36495 * 238.84775 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3976 0.3535 5 7 4.5836 -1.3970 0.3529 6 6 5.3158 -1.7079 -0.8773 7 6 5.5675 -3.1919 -0.9508 8 1 5.2174 -3.8388 -0.1599 9 6 6.2446 -3.7239 -2.0275 10 7 6.6705 -2.9362 -2.9908 11 14 6.5572 -5.5633 -2.1183 12 1 5.4269 -6.2234 -2.8198 13 1 7.8170 -5.8152 -2.8630 14 1 6.6759 -6.1136 -0.7441 15 6 5.2578 -1.1105 1.4843 16 8 6.4707 -1.1105 1.4839 17 6 4.5047 -0.7913 2.7499 18 6 5.4993 -0.5063 3.8771 19 1 6.2359 -1.3057 3.9579 20 6 6.1908 0.8604 3.6688 21 8 6.3748 1.3842 5.0173 22 6 5.3927 0.9434 5.8162 23 8 5.0592 1.4594 6.8566 24 6 4.7644 -0.2975 5.2198 25 1 2.9710 0.7171 0.7369 26 1 2.9712 0.2809 -0.9888 27 1 2.7556 -2.1141 -0.3834 28 1 2.7554 -1.6778 1.3423 29 1 4.7263 -1.3963 -1.7395 30 1 6.2679 -1.1775 -0.8774 31 1 7.1472 -3.3103 -3.7482 32 1 3.8788 -1.6405 3.0243 33 1 3.8774 0.0852 2.5882 34 1 5.5527 1.5248 3.0861 35 1 7.1544 0.7284 3.1768 36 1 4.9206 -1.1543 5.8751 37 1 3.6996 -0.1387 5.0488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160931358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:43 Heat of formation + Delta-G solvation = -98.317759 kcal Electronic energy + Delta-G solvation = -21633.970739 eV Core-core repulsion = 18183.518536 eV Total energy + Delta-G solvation = -3450.452204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13802 -39.43773 -37.58464 -36.96218 -35.44454 -34.32467 -32.93710 -30.96463 -29.38258 -27.84298 -26.58559 -24.14822 -23.14741 -21.40099 -21.23088 -18.75740 -17.74527 -17.39756 -16.84057 -16.56904 -16.44967 -16.29183 -15.53708 -15.11691 -14.80692 -14.40331 -13.97918 -13.97164 -13.70238 -13.40583 -13.16890 -12.68032 -12.53580 -12.44492 -12.32067 -11.96230 -11.83246 -11.46571 -11.37266 -11.30858 -11.06628 -10.94361 -10.69700 -10.65358 -10.32222 -10.27826 -9.80753 -9.18844 -8.55553 -7.99291 -6.17365 -4.22486 1.92020 2.63696 2.72704 3.09963 3.18446 3.22551 3.30532 3.32957 3.46040 3.80466 3.95398 4.20777 4.33374 4.45242 4.58057 4.85795 4.97145 5.00144 5.08836 5.16072 5.18262 5.22868 5.35150 5.38779 5.51184 5.66009 5.72920 5.92849 5.96694 6.63829 6.80248 7.23229 7.30237 7.31086 7.48942 7.77976 8.07053 8.10803 8.68866 8.84853 9.43642 10.90740 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.004878 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.174454 B = 5738.519981 C = 7179.057726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.215 3.785 3 C -0.050 4.050 4 C 0.116 3.884 5 N -0.595 5.595 6 C 0.244 3.756 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.505 3.495 16 O -0.532 6.532 17 C -0.138 4.138 18 C -0.106 4.106 19 H 0.111 0.889 20 C 0.061 3.939 21 O -0.349 6.349 22 C 0.484 3.516 23 O -0.466 6.466 24 C -0.186 4.186 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 5.279 9.521 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.010 4.010 5 N -0.326 5.326 6 C 0.126 3.874 7 C -0.570 4.570 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.291 3.709 16 O -0.408 6.408 17 C -0.179 4.179 18 C -0.125 4.125 19 H 0.129 0.871 20 C -0.012 4.012 21 O -0.265 6.265 22 C 0.324 3.676 23 O -0.351 6.351 24 C -0.224 4.224 25 H 0.124 0.876 26 H 0.136 0.864 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.226 5.659 9.847 12.952 hybrid contribution 0.451 -1.225 -0.379 1.359 sum -5.775 4.434 9.469 11.945 Atomic orbital electron populations 1.81225 1.13059 1.08554 1.09205 1.29091 0.95096 0.93179 0.92932 1.19894 0.81393 1.01422 1.06460 1.21332 0.82148 0.94246 1.03314 1.48230 1.04887 1.67218 1.12281 1.19370 0.92613 0.96454 0.79010 1.21388 1.36971 0.92450 1.06147 0.92383 1.24910 0.95234 0.98268 0.95484 1.69911 1.38157 1.35093 1.09968 0.86520 0.77772 0.85094 0.78182 1.20633 1.21073 1.19891 1.20249 0.88161 0.77887 0.84560 1.90702 1.13668 1.51860 1.84611 1.21842 0.98599 1.03990 0.93420 1.22280 0.98118 0.99349 0.92716 0.87058 1.24367 1.04551 0.93134 0.79180 1.87038 1.46795 1.69564 1.23110 1.23153 0.77010 0.84131 0.83277 1.90705 1.59930 1.62333 1.22111 1.23010 1.02772 0.98472 0.98143 0.87642 0.86436 0.88675 0.90516 0.94721 0.93462 0.92592 0.88049 0.88882 0.89723 0.85804 0.86646 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.02 18.54 42.15 0.78 -5.24 16 2 C 0.22 2.29 15.43 -20.76 -0.32 1.97 16 3 C -0.05 -0.43 6.03 -29.52 -0.18 -0.61 16 4 C 0.12 1.29 5.17 -4.04 -0.02 1.26 16 5 N -0.59 -9.34 2.46 -175.06 -0.43 -9.77 16 6 C 0.24 5.30 5.16 -5.19 -0.03 5.27 16 7 C -0.53 -13.31 9.39 -34.44 -0.32 -13.63 16 8 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -24.46 13.29 55.43 0.74 -23.72 16 11 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.51 7.53 7.51 -10.99 -0.08 7.45 16 16 O -0.53 -10.26 14.72 5.55 0.08 -10.18 16 17 C -0.14 -1.26 3.56 -27.89 -0.10 -1.36 16 18 C -0.11 -0.98 2.74 -89.01 -0.24 -1.23 16 19 H 0.11 1.18 7.88 -51.92 -0.41 0.77 16 20 C 0.06 0.62 6.78 37.98 0.26 0.88 16 21 O -0.35 -4.30 11.05 -38.46 -0.43 -4.72 16 22 C 0.48 5.76 8.58 36.32 0.31 6.08 16 23 O -0.47 -7.12 18.00 -18.41 -0.33 -7.45 16 24 C -0.19 -1.49 6.52 -26.79 -0.17 -1.66 16 25 H 0.11 0.65 7.22 -51.93 -0.38 0.27 16 26 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 28 H 0.08 0.65 6.44 -51.93 -0.33 0.32 16 29 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 30 H 0.05 1.18 7.42 -51.94 -0.39 0.80 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.10 0.76 7.40 -51.93 -0.38 0.37 16 33 H 0.09 0.59 6.98 -51.93 -0.36 0.22 16 34 H 0.08 0.71 7.77 -51.93 -0.40 0.30 16 35 H 0.12 1.37 7.82 -51.93 -0.41 0.96 16 36 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.11 0.69 7.80 -51.93 -0.40 0.29 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -33.19 326.50 -5.38 -38.57 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.69 Total: -3.74 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.00 Total: 5.99 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 1.09 Total: -38.73 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.67 Total: -22.35 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.19 -5.38 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160931358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.745 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds