Wall clock time and date at job start Tue Mar 31 2020 01:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46970 * 345.81254 * 3 2 1 5 5 N 1.46500 * 109.46706 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00495 * 270.00051 * 5 4 3 7 7 C 1.50699 * 109.47130 * 270.00506 * 6 5 4 8 8 H 1.08007 * 119.99888 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00226 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99828 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00362 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46829 * 89.99862 * 11 9 7 13 13 H 1.48495 * 109.47424 * 210.00140 * 11 9 7 14 14 H 1.48503 * 109.46953 * 330.00406 * 11 9 7 15 15 C 1.34780 * 119.99755 * 90.00000 * 5 4 3 16 16 O 1.21285 * 119.99855 * 179.97438 * 15 5 4 17 17 C 1.50695 * 120.00207 * 0.02562 * 15 5 4 18 18 C 1.53000 * 109.47187 * 179.97438 * 17 15 5 19 19 H 1.09007 * 110.93078 * 308.63721 * 18 17 15 20 20 C 1.54570 * 110.87079 * 72.27532 * 18 17 15 21 21 O 1.45834 * 104.44516 * 145.01250 * 20 18 17 22 22 C 1.34058 * 109.90625 * 329.39623 * 21 20 18 23 23 O 1.20827 * 125.09615 * 200.83408 * 22 21 20 24 24 C 1.51336 * 109.81144 * 20.83417 * 22 21 20 25 25 H 1.09000 * 109.46822 * 225.81426 * 3 2 1 26 26 H 1.09002 * 109.46954 * 105.81334 * 3 2 1 27 27 H 1.09000 * 109.47208 * 60.00408 * 4 3 2 28 28 H 1.09002 * 109.47348 * 299.99839 * 4 3 2 29 29 H 1.09002 * 109.46781 * 29.99887 * 6 5 4 30 30 H 1.08988 * 109.47501 * 149.99857 * 6 5 4 31 31 H 0.97000 * 120.00215 * 179.97438 * 10 9 7 32 32 H 1.09002 * 109.47242 * 59.99832 * 17 15 5 33 33 H 1.08996 * 109.47150 * 299.99936 * 17 15 5 34 34 H 1.09004 * 110.43368 * 26.27132 * 20 18 17 35 35 H 1.08995 * 110.43986 * 263.75780 * 20 18 17 36 36 H 1.08998 * 110.36710 * 116.52289 * 24 22 21 37 37 H 1.09005 * 110.36495 * 238.84775 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3976 0.3535 5 7 4.5836 -1.3970 0.3529 6 6 5.3158 -1.7079 -0.8773 7 6 5.5675 -3.1919 -0.9508 8 1 5.2174 -3.8388 -0.1599 9 6 6.2446 -3.7239 -2.0275 10 7 6.6705 -2.9362 -2.9908 11 14 6.5572 -5.5633 -2.1183 12 1 5.4269 -6.2234 -2.8198 13 1 7.8170 -5.8152 -2.8630 14 1 6.6759 -6.1136 -0.7441 15 6 5.2578 -1.1105 1.4843 16 8 6.4707 -1.1105 1.4839 17 6 4.5047 -0.7913 2.7499 18 6 5.4993 -0.5063 3.8771 19 1 6.2359 -1.3057 3.9579 20 6 6.1908 0.8604 3.6688 21 8 6.3748 1.3842 5.0173 22 6 5.3927 0.9434 5.8162 23 8 5.0592 1.4594 6.8566 24 6 4.7644 -0.2975 5.2198 25 1 2.9710 0.7171 0.7369 26 1 2.9712 0.2809 -0.9888 27 1 2.7556 -2.1141 -0.3834 28 1 2.7554 -1.6778 1.3423 29 1 4.7263 -1.3963 -1.7395 30 1 6.2679 -1.1775 -0.8774 31 1 7.1472 -3.3103 -3.7482 32 1 3.8788 -1.6405 3.0243 33 1 3.8774 0.0852 2.5882 34 1 5.5527 1.5248 3.0861 35 1 7.1544 0.7284 3.1768 36 1 4.9206 -1.1543 5.8751 37 1 3.6996 -0.1387 5.0488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160931358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:42 Heat of formation + Delta-G solvation = -119.505640 kcal Electronic energy + Delta-G solvation = -21634.889515 eV Core-core repulsion = 18183.518536 eV Total energy + Delta-G solvation = -3451.370979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.01883 -40.60325 -38.56585 -37.92144 -36.64637 -35.24904 -34.70091 -32.09043 -30.38179 -28.99670 -27.79124 -25.24077 -24.64343 -22.24700 -22.15505 -19.86021 -18.75445 -18.36820 -18.25689 -17.70583 -17.55471 -17.18030 -16.85808 -16.13852 -16.08909 -15.59734 -15.04263 -14.90191 -14.55470 -14.40584 -14.25510 -14.05946 -13.56755 -13.48907 -13.44142 -13.05008 -12.89619 -12.80239 -12.65453 -12.47324 -12.19409 -12.16160 -12.09330 -11.73603 -11.61549 -11.44789 -11.23969 -10.54769 -10.42947 -9.38999 -8.14546 -6.26125 1.04381 1.42051 1.44792 1.53105 1.76017 1.90659 1.99531 2.33797 2.35575 2.48537 3.04104 3.13747 3.18778 3.41659 3.69143 3.81276 4.07611 4.16714 4.20717 4.38191 4.52316 4.55568 4.70782 4.75000 4.81096 4.93389 4.95574 5.13327 5.21808 5.22682 5.41557 5.66709 5.81501 5.93559 6.17792 6.42708 6.67585 6.81658 6.90328 7.39878 7.60848 8.91727 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.004878 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.174454 B = 5738.519981 C = 7179.057726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.246 3.754 3 C -0.039 4.039 4 C 0.112 3.888 5 N -0.598 5.598 6 C 0.259 3.741 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.011 3.989 10 N -0.927 5.927 11 Si 0.954 3.046 12 H -0.270 1.270 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.499 3.501 16 O -0.585 6.585 17 C -0.125 4.125 18 C -0.101 4.101 19 H 0.093 0.907 20 C 0.058 3.942 21 O -0.371 6.371 22 C 0.481 3.519 23 O -0.508 6.508 24 C -0.166 4.166 25 H 0.143 0.857 26 H 0.116 0.884 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.030 0.970 30 H 0.006 0.994 31 H 0.264 0.736 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.226 4.844 10.730 13.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.013 4.013 5 N -0.329 5.329 6 C 0.137 3.863 7 C -0.575 4.575 8 H 0.074 0.926 9 C -0.188 4.188 10 N -0.567 5.567 11 Si 0.780 3.220 12 H -0.195 1.195 13 H -0.214 1.214 14 H -0.197 1.197 15 C 0.288 3.712 16 O -0.465 6.465 17 C -0.165 4.165 18 C -0.120 4.120 19 H 0.111 0.889 20 C -0.015 4.015 21 O -0.288 6.288 22 C 0.324 3.676 23 O -0.396 6.396 24 C -0.203 4.203 25 H 0.161 0.839 26 H 0.134 0.866 27 H 0.096 0.904 28 H 0.133 0.867 29 H 0.048 0.952 30 H 0.024 0.976 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.151 0.849 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.174 5.217 11.062 14.711 hybrid contribution 1.119 -1.062 -0.768 1.723 sum -7.055 4.155 10.294 13.153 Atomic orbital electron populations 1.81275 1.14660 1.10227 1.11054 1.29233 0.95031 0.91585 0.91289 1.19889 0.79815 1.00676 1.07666 1.21546 0.79067 0.95467 1.05174 1.48086 1.06698 1.67335 1.10752 1.18767 0.91583 0.94096 0.81819 1.21786 1.35952 0.94252 1.05514 0.92626 1.25685 0.95458 1.02094 0.95539 1.70019 1.39377 1.36687 1.10636 0.85620 0.77642 0.80704 0.78068 1.19542 1.21403 1.19679 1.21302 0.87862 0.76292 0.85732 1.90692 1.16420 1.53893 1.85498 1.21895 0.98213 1.07013 0.89331 1.22187 0.98015 0.98085 0.93715 0.88863 1.24475 1.04376 0.94369 0.78301 1.87007 1.47469 1.70171 1.24146 1.23776 0.76475 0.84797 0.82528 1.90682 1.61269 1.63800 1.23851 1.22972 1.03899 0.96639 0.96803 0.83921 0.86584 0.90383 0.86661 0.95188 0.97575 0.92738 0.84921 0.84637 0.87404 0.87705 0.84944 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.31 18.54 20.01 0.37 -11.94 16 2 C 0.25 4.44 15.43 89.44 1.38 5.82 16 3 C -0.04 -0.52 6.03 28.79 0.17 -0.35 16 4 C 0.11 2.09 5.17 86.38 0.45 2.54 16 5 N -0.60 -17.68 2.46 -826.16 -2.03 -19.71 16 6 C 0.26 11.35 5.16 85.63 0.44 11.79 16 7 C -0.54 -27.01 9.39 25.60 0.24 -26.77 16 8 H 0.06 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.01 0.59 5.46 84.65 0.46 1.06 16 10 N -0.93 -51.85 13.29 21.45 0.28 -51.56 16 11 Si 0.95 41.82 29.54 68.60 2.03 43.85 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 13 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 15 C 0.50 13.79 7.51 87.65 0.66 14.44 16 16 O -0.58 -22.61 14.72 -3.04 -0.04 -22.66 16 17 C -0.13 -1.66 3.56 29.85 0.11 -1.55 16 18 C -0.10 -1.56 2.74 -9.75 -0.03 -1.58 16 19 H 0.09 1.83 7.88 -2.38 -0.02 1.81 16 20 C 0.06 1.07 6.78 72.52 0.49 1.57 16 21 O -0.37 -8.77 11.05 -50.10 -0.55 -9.33 16 22 C 0.48 10.52 8.58 71.44 0.61 11.14 16 23 O -0.51 -14.99 18.00 21.64 0.39 -14.60 16 24 C -0.17 -1.97 6.52 30.56 0.20 -1.77 16 25 H 0.14 0.91 7.22 -2.39 -0.02 0.90 16 26 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.08 1.77 8.07 -2.39 -0.02 1.75 16 28 H 0.12 1.31 6.44 -2.39 -0.02 1.29 16 29 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 30 H 0.01 0.32 7.42 -2.39 -0.02 0.30 16 31 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.13 1.09 7.40 -2.39 -0.02 1.07 16 33 H 0.14 0.73 6.98 -2.39 -0.02 0.72 16 34 H 0.11 1.47 7.77 -2.38 -0.02 1.45 16 35 H 0.10 2.35 7.82 -2.39 -0.02 2.33 16 36 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.15 0.85 7.80 -2.38 -0.02 0.83 16 Total: -1.00 -77.22 326.50 6.72 -70.50 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: 1.09 Total: -0.89 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 5.19 Total: 16.33 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.37 Total: -83.21 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.21 Total: -46.58 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -77.22 6.72 -70.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160931358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.010 kcal (2) G-P(sol) polarization free energy of solvation -77.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds