Wall clock time and date at job start Tue Mar 31 2020 02:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34235 * 125.79258 * 2 1 4 4 H 0.97002 * 125.39702 * 359.97438 * 3 2 1 5 5 C 1.37829 * 109.20925 * 179.83831 * 3 2 1 6 6 C 1.46633 * 125.86264 * 180.17651 * 5 3 2 7 7 O 1.21602 * 119.99863 * 180.29821 * 6 5 3 8 8 O 1.34872 * 119.99920 * 0.29625 * 6 5 3 9 9 C 1.36451 * 108.27928 * 0.42515 * 5 3 2 10 10 C 1.50701 * 126.49722 * 179.78095 * 9 5 3 11 11 C 1.38240 * 125.79165 * 180.31110 * 2 1 3 12 12 C 1.47399 * 126.45541 * 359.95802 * 11 2 1 13 13 O 1.21609 * 119.99969 * 90.02857 * 12 11 2 14 14 N 1.34774 * 120.00163 * 270.03268 * 12 11 2 15 15 C 1.46499 * 120.00045 * 359.97438 * 14 12 11 16 16 C 1.46504 * 119.99873 * 180.02562 * 14 12 11 17 17 C 1.50701 * 109.47355 * 89.99415 * 16 14 12 18 18 H 1.07996 * 119.99647 * 359.97438 * 17 16 14 19 19 C 1.37878 * 119.99912 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99898 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00062 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46766 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47339 * 120.00063 * 21 19 17 24 24 H 1.48502 * 109.46743 * 239.99914 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.69165 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69265 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69246 * 1 2 3 28 28 H 0.96699 * 116.99860 * 180.02562 * 8 6 5 29 29 H 1.08999 * 109.47022 * 269.95918 * 10 9 5 30 30 H 1.08991 * 109.47153 * 29.96194 * 10 9 5 31 31 H 1.09006 * 109.46995 * 149.96502 * 10 9 5 32 32 H 1.09005 * 109.46605 * 90.00718 * 15 14 12 33 33 H 1.09004 * 109.46958 * 210.00168 * 15 14 12 34 34 H 1.08997 * 109.47318 * 330.01005 * 15 14 12 35 35 H 1.08999 * 109.47071 * 209.99843 * 16 14 12 36 36 H 1.09005 * 109.47132 * 329.99122 * 16 14 12 37 37 H 0.97002 * 119.99931 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2921 1.0888 0.0000 4 1 1.9793 2.0070 -0.0004 5 6 3.6131 0.6955 0.0037 6 6 4.7755 1.5892 0.0085 7 8 5.8994 1.1249 0.0060 8 8 4.5982 2.9262 0.0157 9 6 3.6535 -0.6684 -0.0036 10 6 4.8910 -1.5285 -0.0075 11 6 2.3155 -1.1213 -0.0061 12 6 1.8661 -2.5251 -0.0128 13 8 1.6806 -3.0991 -1.0688 14 7 1.6607 -3.1725 1.1512 15 6 1.8846 -2.4813 2.4233 16 6 1.2145 -4.5680 1.1444 17 6 2.4148 -5.4792 1.1401 18 1 3.4104 -5.0607 1.1418 19 6 2.2419 -6.8471 1.1340 20 7 1.0294 -7.3566 1.1325 21 14 3.7296 -7.9766 1.1294 22 1 4.9704 -7.1607 1.1327 23 1 3.7003 -8.8389 2.3381 24 1 3.7008 -8.8281 -0.0869 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5091 28 1 5.3946 3.4747 0.0183 29 1 5.1895 -1.7309 -1.0361 30 1 5.6971 -1.0076 0.5090 31 1 4.6812 -2.4692 0.5018 32 1 0.9614 -1.9962 2.7406 33 1 2.1943 -3.2029 3.1793 34 1 2.6645 -1.7304 2.2965 35 1 0.6143 -4.7618 2.0334 36 1 0.6144 -4.7532 0.2535 37 1 0.9077 -8.3189 1.1278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161160352.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:55 Heat of formation + Delta-G solvation = -88.255460 kcal Electronic energy + Delta-G solvation = -22148.695327 eV Core-core repulsion = 18698.679458 eV Total energy + Delta-G solvation = -3450.015870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74467 -39.80670 -38.34732 -36.30565 -34.66149 -33.00556 -32.56026 -31.59376 -28.32532 -27.48909 -26.95829 -25.71647 -23.78766 -22.46560 -21.04447 -19.52920 -18.88831 -17.71340 -17.54984 -16.46308 -16.11229 -15.73865 -15.39288 -15.14308 -14.55250 -14.24233 -14.09921 -13.50194 -13.33810 -13.03347 -12.81221 -12.59954 -12.31240 -12.20428 -12.11739 -11.99812 -11.76789 -11.72335 -11.48719 -11.17368 -10.82579 -10.59767 -10.56181 -10.11442 -9.56063 -9.07499 -8.67689 -8.39363 -8.19123 -7.57614 -6.00074 -4.04163 1.11246 2.33388 2.67181 2.98827 3.02851 3.33897 3.40713 3.43193 3.48643 4.15522 4.50286 4.66392 4.87341 5.08908 5.15418 5.33817 5.39687 5.44249 5.63097 5.79581 5.84137 5.86339 6.02084 6.03274 6.14871 6.29299 6.31636 6.35336 6.65728 6.80505 7.12704 7.23367 7.48278 7.60591 7.71922 7.97170 8.28159 8.48124 8.95502 9.16591 9.61073 11.08047 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.004871 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.124497 B = 5746.902590 C = 6557.669455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.106 3.894 3 N -0.521 5.521 4 H 0.422 0.578 5 C -0.064 4.064 6 C 0.555 3.445 7 O -0.504 6.504 8 O -0.525 6.525 9 C -0.013 4.013 10 C -0.100 4.100 11 C -0.206 4.206 12 C 0.580 3.420 13 O -0.535 6.535 14 N -0.593 5.593 15 C 0.088 3.912 16 C 0.245 3.755 17 C -0.523 4.523 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.415 0.585 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.033 0.967 36 H 0.044 0.956 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 21.029 1.401 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.016 4.016 3 N -0.117 5.117 4 H 0.261 0.739 5 C -0.172 4.172 6 C 0.401 3.599 7 O -0.392 6.392 8 O -0.338 6.338 9 C -0.021 4.021 10 C -0.157 4.157 11 C -0.216 4.216 12 C 0.365 3.635 13 O -0.413 6.413 14 N -0.324 5.324 15 C -0.056 4.056 16 C 0.125 3.875 17 C -0.562 4.562 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.724 3.276 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.274 0.726 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.165 20.324 0.862 20.376 hybrid contribution 1.178 0.208 0.080 1.199 sum 2.343 20.532 0.943 20.687 Atomic orbital electron populations 1.20541 0.86612 1.04376 1.03747 1.20753 0.93732 0.85156 1.01927 1.41413 1.04931 1.08649 1.56723 0.73925 1.18420 0.81792 0.92026 1.24940 1.19472 0.87631 0.80113 0.72717 1.90939 1.24531 1.76630 1.47121 1.84558 1.43552 1.19032 1.86639 1.19702 0.94827 0.90352 0.97259 1.20512 0.93396 0.98666 1.03164 1.19631 0.92484 0.93768 1.15677 1.17258 0.78018 0.83940 0.84264 1.90767 1.51716 1.67900 1.30880 1.48109 1.65189 1.14736 1.04365 1.21570 0.99674 0.97295 0.87084 1.19320 0.95609 0.74069 0.98454 1.21485 0.93099 0.90976 1.50672 0.92308 1.24924 0.96004 0.98044 0.95116 1.69942 1.20569 1.12253 1.50748 0.86461 0.82943 0.80621 0.77534 1.19712 1.21030 1.20903 0.89752 0.88933 0.90931 0.72634 0.90630 0.90025 0.90634 0.94088 0.90915 0.92359 0.94897 0.93772 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.24 36.01 0.37 -0.59 16 2 C 0.11 1.39 7.20 -81.54 -0.59 0.80 16 3 N -0.52 -5.69 6.01 -5.63 -0.03 -5.73 16 4 H 0.42 3.12 8.96 -40.82 -0.37 2.75 16 5 C -0.06 -0.86 7.02 -82.43 -0.58 -1.44 16 6 C 0.56 6.80 8.31 34.12 0.28 7.09 16 7 O -0.50 -7.46 15.48 -19.34 -0.30 -7.76 16 8 O -0.52 -4.26 13.44 -40.96 -0.55 -4.81 16 9 C -0.01 -0.21 5.91 -104.12 -0.61 -0.83 16 10 C -0.10 -1.66 9.63 36.01 0.35 -1.31 16 11 C -0.21 -3.55 4.11 -105.02 -0.43 -3.99 16 12 C 0.58 12.62 6.85 -12.53 -0.09 12.54 16 13 O -0.54 -14.06 16.69 5.27 0.09 -13.97 16 14 N -0.59 -12.81 2.86 -184.24 -0.53 -13.34 16 15 C 0.09 1.48 10.26 59.85 0.61 2.09 16 16 C 0.24 6.40 5.16 -5.19 -0.03 6.38 16 17 C -0.52 -14.92 9.39 -34.44 -0.32 -15.24 16 18 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 21 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.14 7.93 -51.93 -0.41 0.72 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.41 1.49 9.11 45.56 0.42 1.91 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.26 6.41 -51.93 -0.33 0.93 16 31 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 34 H 0.06 0.90 6.64 -51.93 -0.34 0.56 16 35 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -36.25 327.51 -5.72 -41.97 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.92 Total: 0.44 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -1.13 Total: 7.13 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.18 Total: -44.97 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.76 Total: -26.54 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.25 -5.72 -41.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161160352.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.287 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds