Wall clock time and date at job start Tue Mar 31 2020 02:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34235 * 125.79258 * 2 1 4 4 H 0.97002 * 125.39702 * 359.97438 * 3 2 1 5 5 C 1.37829 * 109.20925 * 179.83831 * 3 2 1 6 6 C 1.46633 * 125.86264 * 180.17651 * 5 3 2 7 7 O 1.21602 * 119.99863 * 180.29821 * 6 5 3 8 8 O 1.34872 * 119.99920 * 0.29625 * 6 5 3 9 9 C 1.36451 * 108.27928 * 0.42515 * 5 3 2 10 10 C 1.50701 * 126.49722 * 179.78095 * 9 5 3 11 11 C 1.38240 * 125.79165 * 180.31110 * 2 1 3 12 12 C 1.47399 * 126.45541 * 359.95802 * 11 2 1 13 13 O 1.21609 * 119.99969 * 90.02857 * 12 11 2 14 14 N 1.34774 * 120.00163 * 270.03268 * 12 11 2 15 15 C 1.46499 * 120.00045 * 359.97438 * 14 12 11 16 16 C 1.46504 * 119.99873 * 180.02562 * 14 12 11 17 17 C 1.50701 * 109.47355 * 89.99415 * 16 14 12 18 18 H 1.07996 * 119.99647 * 359.97438 * 17 16 14 19 19 C 1.37878 * 119.99912 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99898 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00062 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46766 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47339 * 120.00063 * 21 19 17 24 24 H 1.48502 * 109.46743 * 239.99914 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.69165 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69265 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69246 * 1 2 3 28 28 H 0.96699 * 116.99860 * 180.02562 * 8 6 5 29 29 H 1.08999 * 109.47022 * 269.95918 * 10 9 5 30 30 H 1.08991 * 109.47153 * 29.96194 * 10 9 5 31 31 H 1.09006 * 109.46995 * 149.96502 * 10 9 5 32 32 H 1.09005 * 109.46605 * 90.00718 * 15 14 12 33 33 H 1.09004 * 109.46958 * 210.00168 * 15 14 12 34 34 H 1.08997 * 109.47318 * 330.01005 * 15 14 12 35 35 H 1.08999 * 109.47071 * 209.99843 * 16 14 12 36 36 H 1.09005 * 109.47132 * 329.99122 * 16 14 12 37 37 H 0.97002 * 119.99931 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2921 1.0888 0.0000 4 1 1.9793 2.0070 -0.0004 5 6 3.6131 0.6955 0.0037 6 6 4.7755 1.5892 0.0085 7 8 5.8994 1.1249 0.0060 8 8 4.5982 2.9262 0.0157 9 6 3.6535 -0.6684 -0.0036 10 6 4.8910 -1.5285 -0.0075 11 6 2.3155 -1.1213 -0.0061 12 6 1.8661 -2.5251 -0.0128 13 8 1.6806 -3.0991 -1.0688 14 7 1.6607 -3.1725 1.1512 15 6 1.8846 -2.4813 2.4233 16 6 1.2145 -4.5680 1.1444 17 6 2.4148 -5.4792 1.1401 18 1 3.4104 -5.0607 1.1418 19 6 2.2419 -6.8471 1.1340 20 7 1.0294 -7.3566 1.1325 21 14 3.7296 -7.9766 1.1294 22 1 4.9704 -7.1607 1.1327 23 1 3.7003 -8.8389 2.3381 24 1 3.7008 -8.8281 -0.0869 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5091 28 1 5.3946 3.4747 0.0183 29 1 5.1895 -1.7309 -1.0361 30 1 5.6971 -1.0076 0.5090 31 1 4.6812 -2.4692 0.5018 32 1 0.9614 -1.9962 2.7406 33 1 2.1943 -3.2029 3.1793 34 1 2.6645 -1.7304 2.2965 35 1 0.6143 -4.7618 2.0334 36 1 0.6144 -4.7532 0.2535 37 1 0.9077 -8.3189 1.1278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161160352.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:54 Heat of formation + Delta-G solvation = -115.399215 kcal Electronic energy + Delta-G solvation = -22149.872369 eV Core-core repulsion = 18698.679458 eV Total energy + Delta-G solvation = -3451.192911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.84996 -40.80412 -39.99329 -37.15475 -36.51826 -34.72226 -34.08604 -32.72931 -29.98391 -28.96389 -28.00317 -27.31225 -25.57876 -23.71202 -22.44429 -20.62651 -19.93427 -19.19293 -18.64522 -18.44050 -17.51866 -16.97350 -16.88073 -16.52976 -16.15569 -15.61752 -15.45321 -14.73310 -14.39243 -14.25583 -14.17028 -14.14185 -13.78137 -13.63581 -13.42911 -13.26919 -13.24106 -13.10087 -12.80242 -12.64503 -12.59214 -12.53903 -12.19987 -11.67827 -11.66438 -10.83760 -10.62433 -9.89341 -9.41203 -9.29646 -8.20452 -6.34234 0.09094 1.15359 1.37263 1.39844 1.51672 1.64672 1.84233 1.94737 2.13111 2.38281 2.60861 3.09286 3.69742 3.79430 3.90866 4.14735 4.37883 4.44571 4.45989 4.66284 4.67559 4.71890 4.74892 4.91765 4.96219 5.02936 5.07939 5.14384 5.26631 5.38810 5.57110 5.59375 5.66357 5.86841 6.09049 6.38024 6.72012 6.78970 6.93813 7.29885 7.48686 8.86794 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.004871 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.124497 B = 5746.902590 C = 6557.669455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.132 3.868 3 N -0.491 5.491 4 H 0.445 0.555 5 C -0.055 4.055 6 C 0.566 3.434 7 O -0.533 6.533 8 O -0.505 6.505 9 C -0.041 4.041 10 C -0.093 4.093 11 C -0.245 4.245 12 C 0.582 3.418 13 O -0.596 6.596 14 N -0.597 5.597 15 C 0.087 3.913 16 C 0.259 3.741 17 C -0.542 4.542 18 H 0.050 0.950 19 C 0.011 3.989 20 N -0.926 5.926 21 Si 0.964 3.036 22 H -0.270 1.270 23 H -0.267 1.267 24 H -0.281 1.281 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.438 0.562 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.030 0.970 36 H 0.002 0.998 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 23.928 2.317 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.008 3.992 3 N -0.089 5.089 4 H 0.288 0.712 5 C -0.164 4.164 6 C 0.412 3.588 7 O -0.423 6.423 8 O -0.320 6.320 9 C -0.049 4.049 10 C -0.150 4.150 11 C -0.254 4.254 12 C 0.370 3.630 13 O -0.477 6.477 14 N -0.326 5.326 15 C -0.055 4.055 16 C 0.138 3.862 17 C -0.580 4.580 18 H 0.068 0.932 19 C -0.188 4.188 20 N -0.566 5.566 21 Si 0.788 3.212 22 H -0.194 1.194 23 H -0.192 1.192 24 H -0.207 1.207 25 H 0.125 0.875 26 H 0.084 0.916 27 H 0.130 0.870 28 H 0.301 0.699 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.020 0.980 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.510 23.321 1.822 23.441 hybrid contribution 1.032 -0.563 -0.204 1.193 sum 2.542 22.758 1.618 22.956 Atomic orbital electron populations 1.20686 0.84242 1.05017 1.05360 1.20952 0.94825 0.84249 0.99203 1.41299 1.03676 1.09323 1.54581 0.71195 1.18381 0.83197 0.91274 1.23507 1.19174 0.86450 0.81205 0.72008 1.90941 1.25484 1.77517 1.48391 1.84491 1.44980 1.16962 1.85572 1.19670 0.94041 0.91837 0.99375 1.20373 0.94372 0.97845 1.02403 1.19207 0.93899 0.92064 1.20188 1.17872 0.76441 0.85616 0.83113 1.90713 1.54251 1.69843 1.32916 1.48099 1.64752 1.13308 1.06491 1.21777 1.01939 0.97214 0.84564 1.18818 0.94482 0.76773 0.96108 1.21721 0.93271 0.91959 1.51094 0.93210 1.25787 0.99018 0.99555 0.94452 1.70044 1.22542 1.12897 1.51133 0.85425 0.79206 0.78493 0.78049 1.19423 1.19237 1.20683 0.87502 0.91625 0.86974 0.69876 0.91502 0.89104 0.93210 0.90743 0.91424 0.90756 0.95234 0.97970 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 10.24 71.24 0.73 -0.92 16 2 C 0.13 3.14 7.20 42.19 0.30 3.44 16 3 N -0.49 -8.89 6.01 -171.72 -1.03 -9.92 16 4 H 0.44 4.25 8.96 -92.71 -0.83 3.42 16 5 C -0.05 -1.34 7.02 39.98 0.28 -1.06 16 6 C 0.57 12.21 8.31 70.01 0.58 12.79 16 7 O -0.53 -14.80 15.48 19.50 0.30 -14.49 16 8 O -0.50 -5.99 13.44 -57.86 -0.78 -6.77 16 9 C -0.04 -1.33 5.91 -19.54 -0.12 -1.44 16 10 C -0.09 -3.18 9.63 71.24 0.69 -2.49 16 11 C -0.24 -8.39 4.11 -20.12 -0.08 -8.47 16 12 C 0.58 26.36 6.85 86.66 0.59 26.95 16 13 O -0.60 -33.32 16.69 -4.06 -0.07 -33.38 16 14 N -0.60 -26.68 2.86 -855.06 -2.44 -29.12 16 15 C 0.09 2.89 10.26 127.77 1.31 4.20 16 16 C 0.26 14.27 5.16 85.63 0.44 14.71 16 17 C -0.54 -32.08 9.39 25.60 0.24 -31.84 16 18 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 19 C 0.01 0.64 5.46 84.65 0.46 1.10 16 20 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 21 Si 0.96 45.97 29.54 68.60 2.03 48.00 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 25 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.56 7.93 -2.39 -0.02 1.54 16 27 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.44 1.21 9.11 -74.06 -0.67 0.53 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.09 2.85 6.41 -2.39 -0.02 2.83 16 31 H 0.05 1.90 8.05 -2.38 -0.02 1.88 16 32 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.07 2.29 8.07 -2.38 -0.02 2.27 16 34 H 0.07 2.23 6.64 -2.39 -0.02 2.21 16 35 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 36 H 0.00 0.14 7.42 -2.38 -0.02 0.12 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -83.49 327.51 3.34 -80.15 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -0.38 Total: 4.70 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 5.43 Total: 16.99 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -3.19 Total: -95.20 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -0.54 Total: -54.64 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -83.49 3.34 -80.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161160352.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.248 kcal (2) G-P(sol) polarization free energy of solvation -83.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds