Wall clock time and date at job start Tue Mar 31 2020 01:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47267 * 15.72901 * 3 2 1 5 5 N 1.46898 * 109.46963 * 181.38055 * 4 3 2 6 6 C 1.46905 * 110.99770 * 75.75950 * 5 4 3 7 7 C 1.50710 * 109.46776 * 195.92726 * 6 5 4 8 8 H 1.08000 * 120.00079 * 355.46520 * 7 6 5 9 9 C 1.37869 * 119.99759 * 175.46972 * 7 6 5 10 10 N 1.31518 * 120.00408 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99910 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46919 * 59.99770 * 11 9 7 13 13 H 1.48501 * 109.46942 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47005 * 299.99640 * 11 9 7 15 15 C 1.46901 * 110.99730 * 199.70759 * 5 4 3 16 16 C 1.50702 * 109.47069 * 66.04938 * 15 5 4 17 17 C 1.38200 * 119.97414 * 269.72022 * 16 15 5 18 18 C 1.38474 * 120.02510 * 179.76817 * 17 16 15 19 19 F 1.35103 * 120.01270 * 180.27629 * 18 17 16 20 20 C 1.38413 * 119.97335 * 0.52723 * 18 17 16 21 21 C 1.38420 * 119.95089 * 359.72949 * 20 18 17 22 22 F 1.35096 * 120.01391 * 179.97438 * 21 20 18 23 23 C 1.38206 * 119.97450 * 89.99989 * 16 15 5 24 24 H 1.08994 * 109.47402 * 255.72157 * 3 2 1 25 25 H 1.09002 * 109.46687 * 135.72934 * 3 2 1 26 26 H 1.08998 * 109.47408 * 61.38111 * 4 3 2 27 27 H 1.09002 * 109.46661 * 301.37991 * 4 3 2 28 28 H 1.08998 * 109.46915 * 315.92026 * 6 5 4 29 29 H 1.08993 * 109.47221 * 75.93070 * 6 5 4 30 30 H 0.96996 * 119.99876 * 179.97438 * 10 9 7 31 31 H 1.09003 * 109.46775 * 186.04860 * 15 5 4 32 32 H 1.08994 * 109.47758 * 306.04590 * 15 5 4 33 33 H 1.08007 * 119.98862 * 0.02562 * 17 16 15 34 34 H 1.08007 * 120.02440 * 179.70079 * 20 18 17 35 35 H 1.08002 * 119.98652 * 359.97359 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3876 -0.3910 5 7 4.5873 -1.3960 -0.3589 6 6 5.0833 -1.4456 1.0229 7 6 6.5410 -1.0636 1.0474 8 1 7.0669 -0.8807 0.1220 9 6 7.2031 -0.9476 2.2511 10 7 6.5627 -1.1699 3.3781 11 14 9.0101 -0.4748 2.2814 12 1 9.1841 0.8563 1.6465 13 1 9.4832 -0.4176 3.6878 14 1 9.7991 -1.4867 1.5340 15 6 5.1247 -2.5101 -1.1514 16 6 4.7992 -2.2941 -2.6069 17 6 3.6246 -2.7967 -3.1337 18 6 3.3221 -2.5948 -4.4699 19 9 2.1711 -3.0815 -4.9833 20 6 4.2019 -1.8985 -5.2804 21 6 5.3807 -1.4001 -4.7530 22 9 6.2405 -0.7208 -5.5431 23 6 5.6783 -1.5984 -3.4153 24 1 2.9713 0.2543 0.9958 25 1 2.9710 0.7367 -0.7174 26 1 2.7759 -1.6309 -1.3967 27 1 2.7356 -2.1270 0.3123 28 1 4.5147 -0.7484 1.6383 29 1 4.9659 -2.4557 1.4151 30 1 7.0287 -1.0887 4.2249 31 1 6.2062 -2.5579 -1.0242 32 1 4.6776 -3.4450 -0.8140 33 1 2.9402 -3.3437 -2.5021 34 1 3.9691 -1.7447 -6.3238 35 1 6.5979 -1.2096 -3.0034 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180042963.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:28 Heat of formation + Delta-G solvation = -39.486181 kcal Electronic energy + Delta-G solvation = -21038.539208 eV Core-core repulsion = 17479.550618 eV Total energy + Delta-G solvation = -3558.988591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.04005 -48.98146 -39.32115 -37.24990 -36.06452 -32.83571 -32.12518 -30.52615 -30.26879 -27.25705 -25.59062 -23.35817 -22.69763 -21.94757 -20.19772 -17.79128 -17.24591 -17.12259 -16.61261 -16.38155 -16.00233 -15.68488 -15.31719 -15.20839 -14.68496 -14.39872 -14.23767 -14.06255 -13.81483 -13.10619 -12.74251 -12.62471 -12.22957 -12.16446 -11.93570 -11.91117 -11.69099 -11.43182 -11.06568 -11.04176 -10.92311 -10.75888 -10.43516 -9.91905 -9.42171 -8.91815 -8.72642 -8.54049 -7.57460 -6.14111 -4.16506 0.95952 0.99690 2.92825 2.99375 3.27050 3.32765 3.33636 3.35671 3.81853 4.13601 4.35848 4.36890 4.54804 4.79004 4.92076 5.02814 5.20201 5.23061 5.29412 5.42099 5.65719 5.73536 5.78155 5.79229 5.94905 6.05668 6.10057 6.20390 6.24607 6.49010 6.77960 6.98692 7.11882 7.62609 7.74482 7.84401 7.97583 8.31892 8.89919 9.48809 10.96236 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.005659 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.985377 B = 4946.935563 C = 6580.281012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.219 3.781 3 C -0.025 4.025 4 C 0.050 3.950 5 N -0.526 5.526 6 C 0.190 3.810 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.059 3.941 10 N -0.897 5.897 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.096 3.904 16 C -0.006 4.006 17 C -0.164 4.164 18 C 0.125 3.875 19 F -0.136 7.136 20 C -0.202 4.202 21 C 0.127 3.873 22 F -0.134 7.134 23 C -0.139 4.139 24 H 0.117 0.883 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.041 0.959 29 H -0.006 1.006 30 H 0.263 0.737 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 -2.205 -12.906 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.099 4.099 3 C -0.066 4.066 4 C -0.080 4.080 5 N -0.251 5.251 6 C 0.065 3.935 7 C -0.550 4.550 8 H 0.082 0.918 9 C -0.143 4.143 10 N -0.536 5.536 11 Si 0.724 3.276 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.032 4.032 16 C -0.007 4.007 17 C -0.183 4.183 18 C 0.105 3.895 19 F -0.115 7.115 20 C -0.221 4.221 21 C 0.108 3.892 22 F -0.113 7.113 23 C -0.158 4.158 24 H 0.135 0.865 25 H 0.132 0.868 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.012 0.988 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.060 0.940 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.215 -1.761 -12.932 13.715 hybrid contribution 1.035 -0.387 0.241 1.131 sum -3.179 -2.148 -12.691 13.259 Atomic orbital electron populations 1.81163 1.13241 1.09170 1.09973 1.29455 0.95484 0.92630 0.92324 1.19335 0.80058 1.00735 1.06453 1.22050 0.90814 0.94206 1.00895 1.62105 1.04194 1.42134 1.16651 1.19879 0.96219 0.96167 0.81197 1.21063 0.94404 1.46898 0.92627 0.91757 1.24958 0.98440 0.95393 0.95535 1.69926 1.36700 1.49365 0.97577 0.86586 0.84852 0.79196 0.76945 1.20102 1.21416 1.20256 1.21060 1.02854 0.92809 0.86449 1.19764 0.91556 0.92718 0.96653 1.21182 0.99172 1.04428 0.93565 1.17230 0.83009 0.97302 0.91931 1.91515 1.46750 1.85825 1.87381 1.20913 0.95079 1.04457 1.01693 1.17303 0.88161 0.94933 0.88847 1.91519 1.68626 1.77336 1.73795 1.21203 1.02487 1.00953 0.91149 0.86525 0.86816 0.90975 0.94404 0.94113 0.98803 0.92718 0.87772 0.94033 0.84336 0.83977 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.64 18.54 42.15 0.78 -6.86 16 2 C 0.22 3.15 15.43 -20.76 -0.32 2.83 16 3 C -0.03 -0.33 5.83 -29.52 -0.17 -0.50 16 4 C 0.05 0.72 4.79 -3.83 -0.02 0.70 16 5 N -0.53 -8.88 4.37 -237.51 -1.04 -9.92 16 6 C 0.19 4.10 4.56 -4.97 -0.02 4.08 16 7 C -0.51 -12.44 8.53 -34.44 -0.29 -12.73 16 8 H 0.06 1.53 7.43 -52.49 -0.39 1.14 16 9 C 0.06 1.50 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -24.38 13.29 55.43 0.74 -23.64 16 11 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 C 0.10 1.44 4.96 -4.97 -0.02 1.42 16 16 C -0.01 -0.08 4.94 -104.65 -0.52 -0.59 16 17 C -0.16 -1.97 7.84 -39.51 -0.31 -2.28 16 18 C 0.12 1.50 7.30 -39.43 -0.29 1.21 16 19 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 20 C -0.20 -2.31 10.01 -39.45 -0.39 -2.70 16 21 C 0.13 1.56 7.30 -39.43 -0.29 1.27 16 22 F -0.13 -1.70 17.27 2.25 0.04 -1.66 16 23 C -0.14 -1.77 9.68 -39.51 -0.38 -2.15 16 24 H 0.12 1.62 6.72 -51.93 -0.35 1.27 16 25 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.07 0.93 4.97 -51.93 -0.26 0.67 16 27 H 0.04 0.55 8.00 -51.93 -0.42 0.14 16 28 H 0.04 0.93 6.52 -51.93 -0.34 0.59 16 29 H -0.01 -0.14 8.05 -51.93 -0.42 -0.56 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.10 1.70 6.96 -51.93 -0.36 1.34 16 32 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 33 H 0.14 1.52 7.65 -52.48 -0.40 1.12 16 34 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 315.14 15.07 4.75 4.75 Total: -1.00 -27.20 315.14 -6.60 -33.80 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -3.75 Total: -1.64 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -3.13 Total: -8.06 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.48 Total: -40.42 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.31 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.20 -6.60 -33.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180042963.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.690 kcal (2) G-P(sol) polarization free energy of solvation -27.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds