Wall clock time and date at job start Tue Mar 31 2020 01:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47267 * 15.72901 * 3 2 1 5 5 N 1.46898 * 109.46963 * 181.38055 * 4 3 2 6 6 C 1.46905 * 110.99770 * 75.75950 * 5 4 3 7 7 C 1.50710 * 109.46776 * 195.92726 * 6 5 4 8 8 H 1.08000 * 120.00079 * 355.46520 * 7 6 5 9 9 C 1.37869 * 119.99759 * 175.46972 * 7 6 5 10 10 N 1.31518 * 120.00408 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99910 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46919 * 59.99770 * 11 9 7 13 13 H 1.48501 * 109.46942 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47005 * 299.99640 * 11 9 7 15 15 C 1.46901 * 110.99730 * 199.70759 * 5 4 3 16 16 C 1.50702 * 109.47069 * 66.04938 * 15 5 4 17 17 C 1.38200 * 119.97414 * 269.72022 * 16 15 5 18 18 C 1.38474 * 120.02510 * 179.76817 * 17 16 15 19 19 F 1.35103 * 120.01270 * 180.27629 * 18 17 16 20 20 C 1.38413 * 119.97335 * 0.52723 * 18 17 16 21 21 C 1.38420 * 119.95089 * 359.72949 * 20 18 17 22 22 F 1.35096 * 120.01391 * 179.97438 * 21 20 18 23 23 C 1.38206 * 119.97450 * 89.99989 * 16 15 5 24 24 H 1.08994 * 109.47402 * 255.72157 * 3 2 1 25 25 H 1.09002 * 109.46687 * 135.72934 * 3 2 1 26 26 H 1.08998 * 109.47408 * 61.38111 * 4 3 2 27 27 H 1.09002 * 109.46661 * 301.37991 * 4 3 2 28 28 H 1.08998 * 109.46915 * 315.92026 * 6 5 4 29 29 H 1.08993 * 109.47221 * 75.93070 * 6 5 4 30 30 H 0.96996 * 119.99876 * 179.97438 * 10 9 7 31 31 H 1.09003 * 109.46775 * 186.04860 * 15 5 4 32 32 H 1.08994 * 109.47758 * 306.04590 * 15 5 4 33 33 H 1.08007 * 119.98862 * 0.02562 * 17 16 15 34 34 H 1.08007 * 120.02440 * 179.70079 * 20 18 17 35 35 H 1.08002 * 119.98652 * 359.97359 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3876 -0.3910 5 7 4.5873 -1.3960 -0.3589 6 6 5.0833 -1.4456 1.0229 7 6 6.5410 -1.0636 1.0474 8 1 7.0669 -0.8807 0.1220 9 6 7.2031 -0.9476 2.2511 10 7 6.5627 -1.1699 3.3781 11 14 9.0101 -0.4748 2.2814 12 1 9.1841 0.8563 1.6465 13 1 9.4832 -0.4176 3.6878 14 1 9.7991 -1.4867 1.5340 15 6 5.1247 -2.5101 -1.1514 16 6 4.7992 -2.2941 -2.6069 17 6 3.6246 -2.7967 -3.1337 18 6 3.3221 -2.5948 -4.4699 19 9 2.1711 -3.0815 -4.9833 20 6 4.2019 -1.8985 -5.2804 21 6 5.3807 -1.4001 -4.7530 22 9 6.2405 -0.7208 -5.5431 23 6 5.6783 -1.5984 -3.4153 24 1 2.9713 0.2543 0.9958 25 1 2.9710 0.7367 -0.7174 26 1 2.7759 -1.6309 -1.3967 27 1 2.7356 -2.1270 0.3123 28 1 4.5147 -0.7484 1.6383 29 1 4.9659 -2.4557 1.4151 30 1 7.0287 -1.0887 4.2249 31 1 6.2062 -2.5579 -1.0242 32 1 4.6776 -3.4450 -0.8140 33 1 2.9402 -3.3437 -2.5021 34 1 3.9691 -1.7447 -6.3238 35 1 6.5979 -1.2096 -3.0034 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180042963.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:28 Heat of formation + Delta-G solvation = -53.219681 kcal Electronic energy + Delta-G solvation = -21039.134737 eV Core-core repulsion = 17479.550618 eV Total energy + Delta-G solvation = -3559.584120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.99177 -49.95224 -40.39427 -38.48166 -37.34965 -34.68284 -33.21685 -31.80331 -31.26631 -28.87081 -26.83641 -24.85583 -23.75772 -23.10261 -21.52806 -18.85848 -18.46845 -18.34253 -18.06247 -17.33477 -17.02936 -16.78181 -16.60724 -16.28011 -16.07817 -15.72625 -15.43955 -15.27702 -15.06751 -14.31410 -14.09231 -13.88082 -13.66367 -13.38021 -13.30494 -12.91614 -12.89113 -12.73605 -12.65134 -12.45863 -12.25700 -12.16504 -11.99816 -11.44210 -11.19177 -10.48005 -9.92336 -9.69695 -9.00440 -8.09064 -6.16009 -0.00800 0.02453 1.51432 1.52612 1.59191 1.74362 1.81721 2.34414 2.50156 2.84865 2.96338 3.25674 3.39312 3.51426 3.75835 3.85656 4.02725 4.13543 4.22417 4.26805 4.50178 4.63091 4.69965 4.82504 4.93148 4.99230 5.02883 5.08276 5.10955 5.29952 5.36868 5.49972 5.77344 5.81435 6.16537 6.34688 6.58293 6.64545 6.99593 7.53218 9.00903 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.005659 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.985377 B = 4946.935563 C = 6580.281012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.243 3.757 3 C -0.017 4.017 4 C 0.052 3.948 5 N -0.526 5.526 6 C 0.203 3.797 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.007 3.993 10 N -0.933 5.933 11 Si 0.954 3.046 12 H -0.270 1.270 13 H -0.293 1.293 14 H -0.270 1.270 15 C 0.099 3.901 16 C -0.010 4.010 17 C -0.158 4.158 18 C 0.122 3.878 19 F -0.137 7.137 20 C -0.190 4.190 21 C 0.123 3.877 22 F -0.137 7.137 23 C -0.141 4.141 24 H 0.110 0.890 25 H 0.134 0.866 26 H 0.091 0.909 27 H 0.034 0.966 28 H 0.027 0.973 29 H -0.031 1.031 30 H 0.261 0.739 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -2.004 -14.628 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.074 4.074 3 C -0.057 4.057 4 C -0.078 4.078 5 N -0.250 5.250 6 C 0.077 3.923 7 C -0.551 4.551 8 H 0.086 0.914 9 C -0.191 4.191 10 N -0.574 5.574 11 Si 0.781 3.219 12 H -0.195 1.195 13 H -0.219 1.219 14 H -0.195 1.195 15 C -0.029 4.029 16 C -0.011 4.011 17 C -0.177 4.177 18 C 0.102 3.898 19 F -0.116 7.116 20 C -0.210 4.210 21 C 0.104 3.896 22 F -0.115 7.115 23 C -0.160 4.160 24 H 0.128 0.872 25 H 0.152 0.848 26 H 0.109 0.891 27 H 0.052 0.948 28 H 0.045 0.955 29 H -0.013 1.013 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.168 0.832 34 H 0.180 0.820 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.071 -1.561 -14.687 15.320 hybrid contribution 0.970 -0.482 0.699 1.289 sum -3.100 -2.042 -13.988 14.472 Atomic orbital electron populations 1.81193 1.14331 1.10441 1.11300 1.29500 0.95342 0.91439 0.91113 1.19317 0.79103 1.00631 1.06654 1.22091 0.89006 0.94763 1.01933 1.61968 1.05871 1.43235 1.13933 1.19537 0.95060 0.94091 0.83623 1.21452 0.95800 1.45326 0.92528 0.91363 1.25706 1.02152 0.95785 0.95421 1.70047 1.38165 1.51229 0.98006 0.85658 0.80570 0.79131 0.76574 1.19503 1.21922 1.19493 1.20970 1.01854 0.92438 0.87620 1.19434 0.92348 0.94011 0.95304 1.21236 0.98768 1.03862 0.93880 1.17231 0.83108 0.97519 0.91914 1.91520 1.46812 1.85871 1.87358 1.21096 0.94210 1.03058 1.02622 1.17283 0.88494 0.95264 0.88589 1.91516 1.68787 1.77443 1.73776 1.21215 1.02408 1.00853 0.91551 0.87167 0.84816 0.89087 0.94807 0.95519 1.01327 0.93036 0.89384 0.93450 0.83245 0.81977 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.97 18.54 20.01 0.37 -15.60 16 2 C 0.24 6.66 15.43 89.44 1.38 8.04 16 3 C -0.02 -0.41 5.83 28.79 0.17 -0.24 16 4 C 0.05 1.39 4.79 86.30 0.41 1.80 16 5 N -0.53 -17.29 4.37 -905.35 -3.96 -21.25 16 6 C 0.20 8.81 4.56 85.56 0.39 9.20 16 7 C -0.51 -24.89 8.53 25.60 0.22 -24.67 16 8 H 0.07 3.20 7.43 -2.91 -0.02 3.17 16 9 C 0.01 0.38 5.46 84.65 0.46 0.84 16 10 N -0.93 -51.50 13.29 21.45 0.28 -51.21 16 11 Si 0.95 40.68 29.54 68.60 2.03 42.71 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 13 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 15 C 0.10 2.87 4.96 85.56 0.42 3.30 16 16 C -0.01 -0.24 4.94 -19.88 -0.10 -0.34 16 17 C -0.16 -3.42 7.84 22.32 0.18 -3.25 16 18 C 0.12 2.59 7.30 22.37 0.16 2.75 16 19 F -0.14 -3.03 17.27 44.97 0.78 -2.26 16 20 C -0.19 -3.82 10.01 22.35 0.22 -3.59 16 21 C 0.12 2.75 7.30 22.37 0.16 2.91 16 22 F -0.14 -3.19 17.27 44.97 0.78 -2.41 16 23 C -0.14 -3.36 9.68 22.32 0.22 -3.15 16 24 H 0.11 2.97 6.72 -2.39 -0.02 2.95 16 25 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 26 H 0.09 2.13 4.97 -2.39 -0.01 2.12 16 27 H 0.03 0.95 8.00 -2.39 -0.02 0.94 16 28 H 0.03 1.24 6.52 -2.39 -0.02 1.22 16 29 H -0.03 -1.49 8.05 -2.39 -0.02 -1.51 16 30 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 31 H 0.09 2.85 6.96 -2.39 -0.02 2.83 16 32 H 0.05 1.32 8.06 -2.39 -0.02 1.30 16 33 H 0.15 2.89 7.65 -2.91 -0.02 2.87 16 34 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -57.05 315.14 5.70 -51.35 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.12 Total: 5.07 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 4.30 Total: -6.39 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -3.30 Total: -88.06 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 1.55 Total: -4.67 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -57.05 5.70 -51.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180042963.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.869 kcal (2) G-P(sol) polarization free energy of solvation -57.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds