Wall clock time and date at job start Tue Mar 31 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 116.99923 * 2 1 4 4 O 1.20829 * 119.99822 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99963 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47056 * 179.97438 * 5 3 2 7 7 C 1.36875 * 119.99932 * 265.66634 * 6 5 3 8 8 H 1.07998 * 119.99917 * 140.05622 * 7 6 5 9 9 C 1.39012 * 120.00167 * 320.05551 * 7 6 5 10 10 N 1.31392 * 119.99789 * 159.11121 * 9 7 6 11 11 Si 1.86795 * 119.99846 * 339.10968 * 9 7 6 12 12 H 1.48506 * 109.47043 * 89.11920 * 11 9 7 13 13 H 1.48500 * 109.47161 * 209.11113 * 11 9 7 14 14 H 1.48496 * 109.47480 * 329.12030 * 11 9 7 15 15 C 1.34772 * 119.99779 * 85.66471 * 6 5 3 16 16 O 1.21739 * 120.00336 * 4.21974 * 15 6 5 17 17 C 1.46548 * 119.99915 * 184.21190 * 15 6 5 18 18 C 1.37994 * 126.23500 * 96.23644 * 17 15 6 19 19 C 1.50700 * 126.46140 * 0.02562 * 18 17 15 20 20 C 1.39809 * 107.08374 * 180.02562 * 18 17 15 21 21 C 1.35485 * 107.87694 * 359.73608 * 20 18 17 22 22 N 1.35582 * 108.88310 * 0.43175 * 21 20 18 23 23 C 1.46496 * 125.68542 * 179.82491 * 22 21 20 24 24 H 1.09002 * 109.46946 * 299.99896 * 1 2 3 25 25 H 1.08994 * 109.47368 * 59.99713 * 1 2 3 26 26 H 1.09008 * 109.46820 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46870 * 60.00357 * 5 3 2 28 28 H 1.08997 * 109.47316 * 299.99968 * 5 3 2 29 29 H 0.97001 * 119.99866 * 179.97438 * 10 9 7 30 30 H 1.09010 * 109.47131 * 89.99869 * 19 18 17 31 31 H 1.08997 * 109.47593 * 209.99787 * 19 18 17 32 32 H 1.08996 * 109.47238 * 329.99897 * 19 18 17 33 33 H 1.07998 * 126.06117 * 180.02562 * 20 18 17 34 34 H 1.08000 * 125.55748 * 180.29419 * 21 20 18 35 35 H 1.08998 * 109.47755 * 264.67997 * 23 22 21 36 36 H 1.09002 * 109.47315 * 144.67719 * 23 22 21 37 37 H 1.09010 * 109.47004 * 24.67861 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.2621 3.3099 -1.1824 8 1 3.9484 4.3317 -1.3374 9 6 4.9506 2.6347 -2.1837 10 7 4.8715 3.0477 -3.4285 11 14 5.9881 1.1405 -1.7593 12 1 5.1479 -0.0819 -1.8305 13 1 7.1103 1.0266 -2.7252 14 1 6.5308 1.2888 -0.3851 15 6 4.0876 3.3517 1.1633 16 8 3.9131 2.7717 2.2193 17 6 4.4130 4.7806 1.1572 18 6 3.5115 5.8228 1.2311 19 6 2.0126 5.7049 1.3334 20 6 4.2508 7.0088 1.1932 21 6 5.5619 6.6790 1.1048 22 7 5.6736 5.3281 1.0761 23 6 6.9272 4.5760 0.9810 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 3.9564 0.7806 -0.8893 28 1 3.9557 0.7810 0.8908 29 1 5.3522 2.5768 -4.1272 30 1 1.7221 5.6650 2.3834 31 1 1.5469 6.5693 0.8602 32 1 1.6846 4.7950 0.8309 33 1 3.8485 8.0103 1.2325 34 1 6.3839 7.3782 1.0618 35 1 7.1214 4.3238 -0.0614 36 1 6.8472 3.6607 1.5675 37 1 7.7458 5.1841 1.3663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189862661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:42 Heat of formation + Delta-G solvation = -70.378480 kcal Electronic energy + Delta-G solvation = -23115.922458 eV Core-core repulsion = 19666.681792 eV Total energy + Delta-G solvation = -3449.240666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.26400 -41.55378 -40.02500 -37.59849 -36.80640 -34.48634 -34.09505 -31.54518 -30.45442 -29.01230 -27.88255 -26.88033 -25.95467 -23.29745 -22.10561 -21.00845 -20.41532 -19.18622 -18.83009 -18.42849 -17.52493 -17.26145 -17.16053 -16.90134 -15.94114 -15.69564 -15.58389 -14.88421 -14.63135 -14.58562 -14.21651 -14.13534 -14.04924 -13.81955 -13.58956 -13.53066 -13.01285 -12.99235 -12.77767 -12.69041 -12.43536 -12.35419 -11.98246 -11.84090 -11.76395 -11.31387 -10.83958 -10.02934 -9.30735 -8.81391 -8.55950 -6.25788 1.04779 1.09172 1.19284 1.20609 1.33068 1.41752 1.75470 2.07278 2.10648 2.26533 2.53447 2.91946 3.81196 3.87597 3.98205 4.00138 4.18095 4.28831 4.29487 4.31981 4.39055 4.45687 4.52399 4.63016 4.66460 4.82865 4.90528 5.09861 5.13510 5.26450 5.27108 5.56664 5.93335 6.09652 6.11582 6.24867 6.60146 6.67684 6.79715 7.14352 7.48699 8.57394 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.009111 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.913829 B = 3072.437599 C = 4169.710416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.450 3.550 4 O -0.520 6.520 5 C 0.092 3.908 6 N -0.441 5.441 7 C -0.335 4.335 8 H 0.064 0.936 9 C 0.032 3.968 10 N -0.888 5.888 11 Si 0.911 3.089 12 H -0.243 1.243 13 H -0.271 1.271 14 H -0.250 1.250 15 C 0.565 3.435 16 O -0.604 6.604 17 C -0.028 4.028 18 C -0.156 4.156 19 C -0.072 4.072 20 C -0.215 4.215 21 C 0.004 3.996 22 N -0.422 5.422 23 C 0.071 3.929 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.142 0.858 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.284 0.716 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.161 0.839 34 H 0.207 0.793 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 -1.419 5.415 5.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.292 3.708 4 O -0.408 6.408 5 C -0.032 4.032 6 N -0.161 5.161 7 C -0.463 4.463 8 H 0.082 0.918 9 C -0.173 4.173 10 N -0.524 5.524 11 Si 0.733 3.267 12 H -0.169 1.169 13 H -0.197 1.197 14 H -0.173 1.173 15 C 0.355 3.645 16 O -0.489 6.489 17 C -0.142 4.142 18 C -0.163 4.163 19 C -0.129 4.129 20 C -0.239 4.239 21 C -0.128 4.128 22 N -0.097 5.097 23 C -0.070 4.070 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.160 0.840 27 H 0.138 0.862 28 H 0.146 0.854 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.178 0.822 34 H 0.224 0.776 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.802 -1.675 5.672 6.183 hybrid contribution -0.107 -0.505 -0.482 0.707 sum 1.695 -2.180 5.190 5.878 Atomic orbital electron populations 1.23572 0.74748 1.05942 1.02232 1.86481 1.25228 1.32136 1.84089 1.24528 0.92761 0.81781 0.71731 1.90614 1.67189 1.37489 1.45511 1.21675 0.87950 0.87164 1.06453 1.43356 1.57496 1.08940 1.06262 1.18612 1.37445 0.99390 0.90813 0.91783 1.25958 0.96631 1.00773 0.93953 1.69834 1.39454 1.42659 1.00440 0.86411 0.80090 0.80057 0.80142 1.16861 1.19660 1.17333 1.17527 0.78441 0.85860 0.82709 1.90651 1.56317 1.69854 1.32072 1.19773 0.86337 0.92062 1.16030 1.20034 0.95246 0.92543 1.08496 1.20053 0.90559 1.01286 1.01032 1.20853 0.92592 0.97782 1.12661 1.22431 0.99514 0.82792 1.08108 1.43926 1.05281 1.06837 1.53626 1.22218 0.83985 0.97417 1.03405 0.92297 0.92438 0.83984 0.86201 0.85379 0.90611 0.91844 0.90177 0.95173 0.82169 0.77645 0.91169 0.91631 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.36 -13.00 10.57 -51.44 -0.54 -13.55 16 3 C 0.45 19.93 8.00 71.24 0.57 20.50 16 4 O -0.52 -26.27 16.09 21.95 0.35 -25.92 16 5 C 0.09 4.07 4.63 85.63 0.40 4.47 16 6 N -0.44 -22.06 1.66 -644.26 -1.07 -23.13 16 7 C -0.34 -18.10 9.06 84.09 0.76 -17.34 16 8 H 0.06 4.00 7.55 -2.91 -0.02 3.97 16 9 C 0.03 1.65 5.28 84.94 0.45 2.10 16 10 N -0.89 -48.53 13.96 21.68 0.30 -48.22 16 11 Si 0.91 37.38 25.30 68.60 1.74 39.11 16 12 H -0.24 -9.09 6.42 99.48 0.64 -8.46 16 13 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 14 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 15 C 0.56 28.60 6.44 86.41 0.56 29.15 16 16 O -0.60 -32.26 16.74 -4.47 -0.07 -32.34 16 17 C -0.03 -1.30 5.07 40.34 0.20 -1.10 16 18 C -0.16 -6.76 6.21 -19.54 -0.12 -6.89 16 19 C -0.07 -2.97 10.20 71.24 0.73 -2.24 16 20 C -0.21 -7.57 10.76 22.01 0.24 -7.33 16 21 C 0.00 0.14 11.37 83.48 0.95 1.09 16 22 N -0.42 -16.16 3.16 -534.25 -1.69 -17.85 16 23 C 0.07 2.19 10.89 127.77 1.39 3.58 16 24 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 25 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 26 H 0.14 2.47 8.14 -2.38 -0.02 2.45 16 27 H 0.12 5.07 3.54 -2.38 -0.01 5.06 16 28 H 0.13 5.16 7.50 -2.39 -0.02 5.14 16 29 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.03 1.43 7.96 -2.39 -0.02 1.41 16 33 H 0.16 4.53 8.06 -2.91 -0.02 4.51 16 34 H 0.21 4.39 8.06 -2.91 -0.02 4.36 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.06 2.16 7.95 -2.39 -0.02 2.15 16 37 H 0.13 2.64 8.12 -2.38 -0.02 2.62 16 Total: -1.00 -73.25 322.45 7.34 -65.91 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 1.01 Total: 28.04 kcal Atomic # 6 Polarization: 20.63 SS G_CDS: 7.32 Total: 27.94 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -2.46 Total: -89.21 kcal Atomic # 8 Polarization: -71.53 SS G_CDS: -0.27 Total: -71.80 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 1.74 Total: 39.11 kcal Total: -73.25 7.34 -65.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189862661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.468 kcal (2) G-P(sol) polarization free energy of solvation -73.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds