Wall clock time and date at job start Tue Mar 31 2020 01:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99886 * 2 1 4 4 C 1.53004 * 109.47113 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47316 * 179.97438 * 4 3 2 6 6 O 1.45194 * 109.47082 * 180.02562 * 5 4 3 7 7 C 1.34765 * 116.99702 * 180.02562 * 6 5 4 8 8 O 1.21506 * 120.00237 * 359.97438 * 7 6 5 9 9 C 1.47395 * 119.99623 * 179.97438 * 7 6 5 10 10 C 1.39734 * 120.20534 * 0.02562 * 9 7 6 11 11 C 1.37806 * 119.91198 * 180.02562 * 10 9 7 12 12 C 1.38588 * 120.33558 * 359.97438 * 11 10 9 13 13 C 1.38028 * 120.40874 * 0.02562 * 12 11 10 14 14 C 1.38823 * 120.08297 * 0.02562 * 13 12 11 15 15 O 1.35508 * 120.16898 * 180.02562 * 14 13 12 16 16 C 1.34810 * 116.99710 * 354.39018 * 15 14 13 17 17 H 1.07997 * 120.00078 * 5.05946 * 16 15 14 18 18 C 1.38703 * 119.99974 * 185.05742 * 16 15 14 19 19 N 1.31514 * 119.99875 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99874 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47316 * 90.00066 * 20 18 16 22 22 H 1.48501 * 109.47207 * 209.99775 * 20 18 16 23 23 H 1.48494 * 109.47176 * 330.00011 * 20 18 16 24 24 H 1.08992 * 109.47524 * 300.00513 * 1 2 3 25 25 H 1.09012 * 109.46961 * 60.00349 * 1 2 3 26 26 H 1.08999 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47228 * 59.99272 * 3 2 1 28 28 H 1.09005 * 109.47015 * 299.99599 * 3 2 1 29 29 H 1.09005 * 109.46642 * 59.99720 * 4 3 2 30 30 H 1.08991 * 109.46787 * 299.99872 * 4 3 2 31 31 H 1.08999 * 109.47063 * 59.99465 * 5 4 3 32 32 H 1.09005 * 109.46978 * 299.99916 * 5 4 3 33 33 H 1.07995 * 120.04158 * 359.97438 * 10 9 7 34 34 H 1.08001 * 119.82948 * 179.97438 * 11 10 9 35 35 H 1.07992 * 119.79703 * 179.74492 * 12 11 10 36 36 H 1.08006 * 119.95539 * 179.97438 * 13 12 11 37 37 H 0.97006 * 119.99680 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.6052 2.4677 0.0000 7 6 6.3099 3.6164 0.0000 8 8 5.7306 4.6845 -0.0005 9 6 7.7833 3.5770 0.0006 10 6 8.4538 2.3510 0.0006 11 6 9.8315 2.3213 0.0016 12 6 10.5571 3.5020 0.0022 13 6 9.9088 4.7205 0.0022 14 6 8.5214 4.7705 0.0022 15 8 7.8831 5.9658 0.0017 16 6 8.6493 7.0688 0.1186 17 1 9.7256 6.9805 0.1249 18 6 8.0553 8.3172 0.2307 19 7 8.8028 9.3932 0.3453 20 14 6.1936 8.4700 0.2205 21 1 5.6815 8.3764 1.6113 22 1 5.8076 9.7803 -0.3619 23 1 5.6116 7.3747 -0.5960 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.8574 0.6435 -0.8891 30 1 3.8567 0.6440 0.8908 31 1 3.8357 3.1238 0.8895 32 1 3.8365 3.1227 -0.8905 33 1 7.8930 1.4281 0.0006 34 1 10.3484 1.3730 0.0021 35 1 11.6365 3.4685 0.0072 36 1 10.4815 5.6362 0.0030 37 1 8.3873 10.2663 0.4234 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194394099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:18 Heat of formation + Delta-G solvation = -154.822160 kcal Electronic energy + Delta-G solvation = -21226.859328 eV Core-core repulsion = 17741.664158 eV Total energy + Delta-G solvation = -3485.195169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67008 -40.54142 -38.98629 -38.27291 -37.46117 -34.56470 -34.05648 -32.27774 -30.86682 -28.30762 -27.38778 -26.33132 -24.83505 -23.21010 -22.62774 -21.94683 -19.90892 -19.39379 -18.51802 -17.80150 -17.77148 -17.08065 -16.87904 -16.52733 -16.02133 -15.84457 -15.77495 -15.48272 -15.34760 -15.04841 -14.40566 -14.16007 -14.05925 -13.69491 -13.16741 -13.06795 -12.85675 -12.71835 -12.63185 -12.40115 -12.39348 -12.06487 -12.04855 -11.68129 -11.53206 -11.18528 -10.99863 -10.67515 -9.98219 -9.23231 -8.60937 -6.30801 -0.12740 0.61158 1.23951 1.28618 1.54314 1.55239 1.65508 2.26227 2.70840 2.81727 2.91817 3.08153 3.80295 3.84536 3.94195 4.04042 4.12420 4.21482 4.26375 4.35340 4.45500 4.46588 4.52472 4.53363 4.59783 4.77350 4.84923 4.97780 4.98258 5.07477 5.25814 5.35776 5.48507 5.58149 5.67995 5.80224 6.10615 6.15065 6.74105 6.87277 7.49892 8.49096 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.004533 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.622492 B = 6175.244386 C = 7914.384072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.065 3.935 4 C -0.106 4.106 5 C 0.066 3.934 6 O -0.349 6.349 7 C 0.507 3.493 8 O -0.535 6.535 9 C -0.227 4.227 10 C -0.011 4.011 11 C -0.193 4.193 12 C -0.029 4.029 13 C -0.250 4.250 14 C 0.170 3.830 15 O -0.209 6.209 16 C -0.405 4.405 17 H 0.096 0.904 18 C 0.028 3.972 19 N -0.907 5.907 20 Si 0.953 3.047 21 H -0.274 1.274 22 H -0.264 1.264 23 H -0.265 1.265 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.123 0.877 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.200 -19.447 -0.669 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.012 4.012 4 C -0.143 4.143 5 C -0.008 4.008 6 O -0.267 6.267 7 C 0.355 3.645 8 O -0.426 6.426 9 C -0.229 4.229 10 C -0.029 4.029 11 C -0.211 4.211 12 C -0.046 4.046 13 C -0.269 4.269 14 C 0.117 3.883 15 O -0.112 6.112 16 C -0.481 4.481 17 H 0.114 0.886 18 C -0.173 4.173 19 N -0.546 5.546 20 Si 0.777 3.223 21 H -0.199 1.199 22 H -0.188 1.188 23 H -0.189 1.189 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.118 0.882 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.181 0.819 34 H 0.186 0.814 35 H 0.175 0.825 36 H 0.141 0.859 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.543 -18.993 -0.669 21.266 hybrid contribution -0.783 1.330 0.055 1.544 sum -10.326 -17.663 -0.615 20.469 Atomic orbital electron populations 1.22957 0.79170 1.04046 1.00944 1.87808 1.21677 1.28018 1.95653 1.22328 0.92333 0.84932 1.01602 1.21275 0.93515 0.94213 1.05303 1.22950 0.76085 0.99101 1.02674 1.86462 1.21618 1.33757 1.84830 1.21245 0.88968 0.81604 0.72696 1.90899 1.72244 1.32099 1.47408 1.18464 0.88291 0.93175 1.22988 1.21460 0.95340 0.95067 0.91071 1.21289 0.93054 0.99297 1.07476 1.21550 1.01435 0.90726 0.90939 1.21324 0.92590 1.00627 1.12404 1.19666 0.92115 0.85115 0.91431 1.83733 1.36203 1.12028 1.79285 1.20919 0.91911 0.83312 1.51934 0.88628 1.25058 1.03680 0.93507 0.95078 1.69675 1.37724 0.98977 1.48270 0.85451 0.79615 0.77884 0.79387 1.19944 1.18849 1.18934 0.93159 0.93158 0.88180 0.92082 0.92062 0.89548 0.89557 0.91466 0.91471 0.81946 0.81384 0.82460 0.85944 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.92 10.70 -148.98 -1.59 -9.52 16 3 C 0.06 1.14 5.94 71.98 0.43 1.57 16 4 C -0.11 -2.11 5.96 30.59 0.18 -1.92 16 5 C 0.07 1.76 5.48 71.98 0.39 2.15 16 6 O -0.35 -11.36 9.47 -56.76 -0.54 -11.90 16 7 C 0.51 21.22 7.89 70.23 0.55 21.77 16 8 O -0.54 -26.96 14.96 26.81 0.40 -26.56 16 9 C -0.23 -9.21 5.89 -20.00 -0.12 -9.33 16 10 C -0.01 -0.34 9.61 22.53 0.22 -0.12 16 11 C -0.19 -4.89 10.02 22.25 0.22 -4.67 16 12 C -0.03 -0.85 10.03 22.30 0.22 -0.62 16 13 C -0.25 -10.35 9.16 22.36 0.20 -10.15 16 14 C 0.17 8.12 6.66 22.92 0.15 8.28 16 15 O -0.21 -11.89 6.67 1.02 0.01 -11.89 16 16 C -0.40 -24.15 9.95 67.93 0.68 -23.47 16 17 H 0.10 5.73 5.44 -2.91 -0.02 5.72 16 18 C 0.03 1.65 5.49 84.85 0.47 2.11 16 19 N -0.91 -54.34 13.96 21.62 0.30 -54.04 16 20 Si 0.95 49.21 28.62 68.60 1.96 51.18 16 21 H -0.27 -13.91 7.11 99.48 0.71 -13.21 16 22 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.26 -14.60 7.11 99.48 0.71 -13.89 16 24 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.16 3.71 7.61 -2.91 -0.02 3.69 16 34 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.12 5.46 5.64 -2.91 -0.02 5.45 16 37 H 0.29 15.81 8.31 -92.70 -0.77 15.04 16 Total: -1.00 -74.06 325.16 6.47 -67.59 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.07 Total: 7.97 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.85 Total: -12.85 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.30 Total: -54.04 kcal Atomic # 8 Polarization: -58.13 SS G_CDS: -1.72 Total: -59.86 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.96 Total: 51.18 kcal Total: -74.06 6.47 -67.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194394099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.230 kcal (2) G-P(sol) polarization free energy of solvation -74.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds