Wall clock time and date at job start Tue Mar 31 2020 01:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86799 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46896 * 239.99918 * 3 2 1 5 5 H 1.48502 * 109.46727 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47275 * 119.99717 * 3 2 1 7 7 C 1.38952 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99814 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00244 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00079 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99759 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99930 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.50193 * 59.92579 * 12 10 9 14 14 C 1.53115 * 109.50633 * 299.80178 * 12 10 9 15 15 C 1.53125 * 109.16154 * 182.40492 * 14 12 10 16 16 C 1.53035 * 109.27680 * 57.65638 * 15 14 12 17 17 N 1.46850 * 109.52255 * 300.81710 * 16 15 14 18 18 C 1.46900 * 110.99813 * 185.83969 * 17 16 15 19 19 C 1.53003 * 109.47524 * 312.29576 * 18 17 16 20 20 F 1.39903 * 109.46514 * 66.39823 * 19 18 17 21 21 F 1.39895 * 109.47050 * 306.40223 * 19 18 17 22 22 F 1.39896 * 109.47158 * 186.39567 * 19 18 17 23 23 C 1.46851 * 111.19541 * 61.74720 * 17 16 15 24 24 H 0.96996 * 119.99821 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99817 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.52511 * 302.31024 * 14 12 10 27 27 H 1.08994 * 109.52050 * 62.50002 * 14 12 10 28 28 H 1.08994 * 109.50103 * 177.59402 * 15 14 12 29 29 H 1.08999 * 109.50086 * 297.71267 * 15 14 12 30 30 H 1.08999 * 109.46175 * 180.80585 * 16 15 14 31 31 H 1.09002 * 109.46528 * 60.83773 * 16 15 14 32 32 H 1.09008 * 109.47007 * 192.29963 * 18 17 16 33 33 H 1.08999 * 109.46945 * 72.30004 * 18 17 16 34 34 H 1.08997 * 109.46436 * 58.27201 * 23 17 16 35 35 H 1.08997 * 109.46232 * 178.24933 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 1 0.6163 -4.9212 -0.8872 14 6 0.3665 -4.9462 1.2543 15 6 -0.3492 -6.2997 1.2774 16 6 0.6909 -7.4218 1.2416 17 7 1.5040 -7.2986 0.0250 18 6 2.4211 -8.4378 -0.1127 19 6 3.1398 -8.6778 1.2165 20 9 2.2141 -9.0976 2.1778 21 9 3.7457 -7.4901 1.6401 22 9 4.1164 -9.6650 1.0471 23 6 2.2377 -6.0267 0.0033 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.9899 -4.8485 2.1431 27 1 -0.3714 -4.1443 1.2359 28 1 -0.9422 -6.3822 2.1882 29 1 -1.0023 -6.3809 0.4086 30 1 0.1841 -8.3868 1.2436 31 1 1.3349 -7.3482 2.1180 32 1 3.1554 -8.2214 -0.8888 33 1 1.8555 -9.3286 -0.3860 34 1 2.8744 -5.9596 0.8854 35 1 2.8542 -5.9784 -0.8942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195452999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:48 Heat of formation + Delta-G solvation = -191.481583 kcal Electronic energy + Delta-G solvation = -23063.939245 eV Core-core repulsion = 19067.590414 eV Total energy + Delta-G solvation = -3996.348830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.28219 -47.75973 -47.69983 -39.45187 -37.58258 -33.99746 -33.88118 -31.24053 -30.65209 -28.74804 -25.31418 -24.31294 -23.13093 -22.51869 -20.30570 -19.05038 -18.64259 -18.49458 -17.86786 -17.38316 -16.12056 -15.49638 -15.01037 -14.87217 -14.52218 -14.40717 -14.25244 -14.12823 -13.95147 -13.84482 -13.77238 -13.70185 -13.23673 -12.67085 -12.58427 -12.22220 -12.18786 -11.91945 -11.50308 -11.07840 -10.96295 -10.71461 -10.45016 -10.42549 -10.27138 -10.11729 -9.51099 -8.54050 -8.32997 -7.97471 -6.42420 -3.83233 2.67879 3.19608 3.25531 3.29658 3.44377 3.71378 3.88736 3.91696 4.15116 4.21658 4.76968 4.89566 4.99216 5.11817 5.14757 5.21814 5.36355 5.43407 5.53520 5.76286 5.78599 5.88160 6.05745 6.11996 6.16346 6.34891 6.53206 6.59587 6.81378 6.91759 7.54438 8.04822 8.59632 9.16468 9.53785 10.04805 10.75059 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.034390 B = 0.004224 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.990399 B = 6627.158945 C = 7097.250509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.302 4.302 8 H 0.102 0.898 9 N -0.558 5.558 10 C 0.445 3.555 11 O -0.597 6.597 12 C -0.092 4.092 13 H 0.090 0.910 14 C -0.115 4.115 15 C -0.113 4.113 16 C 0.036 3.964 17 N -0.521 5.521 18 C 0.019 3.981 19 C 0.411 3.589 20 F -0.185 7.185 21 F -0.176 7.176 22 F -0.190 7.190 23 C 0.057 3.943 24 H 0.272 0.728 25 H 0.393 0.607 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.067 0.933 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 -16.965 1.346 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.432 4.432 8 H 0.120 0.880 9 N -0.193 5.193 10 C 0.231 3.769 11 O -0.483 6.483 12 C -0.114 4.114 13 H 0.108 0.892 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.091 4.091 17 N -0.243 5.243 18 C -0.112 4.112 19 C 0.354 3.646 20 F -0.166 7.166 21 F -0.157 7.157 22 F -0.171 7.171 23 C -0.069 4.069 24 H 0.082 0.918 25 H 0.227 0.773 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.085 0.915 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.732 -16.761 0.969 16.805 hybrid contribution 0.472 0.822 0.913 1.316 sum -0.260 -15.939 1.882 16.052 Atomic orbital electron populations 1.69606 1.05928 1.28301 1.50313 1.25261 0.95621 0.99709 0.97202 0.85924 0.78785 0.80471 0.79082 1.19887 1.20948 1.19908 1.19677 0.93371 0.82325 1.47788 0.87992 1.41863 1.09244 1.04541 1.63619 1.19751 0.88054 0.84789 0.84346 1.90517 1.13962 1.87367 1.56437 1.21098 0.97102 0.93504 0.99664 0.89210 1.21611 0.98783 0.97326 0.97543 1.21596 0.97307 0.93832 1.02388 1.22630 0.96100 1.00061 0.90349 1.62154 1.21928 1.01686 1.38555 1.23741 0.97099 0.98631 0.91775 1.22432 0.78066 0.74037 0.90031 1.93156 1.65544 1.90326 1.67607 1.93186 1.84446 1.46314 1.91765 1.93170 1.65051 1.63335 1.95580 1.22291 0.94977 0.85911 1.03766 0.91785 0.77325 0.91818 0.90749 0.91148 0.90856 0.90148 0.93332 0.86197 0.86202 0.91451 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 2 C 0.02 0.64 5.50 -17.46 -0.10 0.54 16 3 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.10 5.19 -10.97 -0.06 -14.16 16 10 C 0.45 10.49 7.11 -10.99 -0.08 10.41 16 11 O -0.60 -16.17 15.56 5.55 0.09 -16.09 16 12 C -0.09 -1.62 2.69 -91.69 -0.25 -1.87 16 13 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 14 C -0.11 -1.79 5.16 -26.61 -0.14 -1.92 16 15 C -0.11 -1.38 6.09 -26.65 -0.16 -1.55 16 16 C 0.04 0.43 3.96 -3.83 -0.02 0.41 16 17 N -0.52 -6.57 4.86 -234.66 -1.14 -7.71 16 18 C 0.02 0.19 5.74 -3.82 -0.02 0.16 16 19 C 0.41 4.81 2.83 37.16 0.11 4.91 16 20 F -0.18 -2.18 13.95 2.25 0.03 -2.15 16 21 F -0.18 -2.57 13.84 2.25 0.03 -2.54 16 22 F -0.19 -2.20 17.32 2.25 0.04 -2.16 16 23 C 0.06 0.93 3.60 -3.83 -0.01 0.91 16 24 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.39 9.52 7.38 -40.82 -0.30 9.22 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 1.18 7.66 -51.93 -0.40 0.78 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.81 7.79 -51.93 -0.40 0.41 16 31 H 0.05 0.64 5.71 -51.93 -0.30 0.34 16 32 H 0.12 1.07 7.86 -51.92 -0.41 0.66 16 33 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.21 5.48 -51.93 -0.28 0.93 16 35 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 LS Contribution 292.98 15.07 4.42 4.42 Total: -1.00 -30.56 292.98 -5.83 -36.39 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.13 Total: 8.18 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.81 Total: 3.46 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.47 Total: -45.50 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.09 Total: -16.09 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.10 Total: -6.84 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.56 -5.83 -36.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195452999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.088 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds