Wall clock time and date at job start Tue Mar 31 2020 01:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86799 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46896 * 239.99918 * 3 2 1 5 5 H 1.48502 * 109.46727 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47275 * 119.99717 * 3 2 1 7 7 C 1.38952 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99814 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00244 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00079 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99759 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99930 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.50193 * 59.92579 * 12 10 9 14 14 C 1.53115 * 109.50633 * 299.80178 * 12 10 9 15 15 C 1.53125 * 109.16154 * 182.40492 * 14 12 10 16 16 C 1.53035 * 109.27680 * 57.65638 * 15 14 12 17 17 N 1.46850 * 109.52255 * 300.81710 * 16 15 14 18 18 C 1.46900 * 110.99813 * 185.83969 * 17 16 15 19 19 C 1.53003 * 109.47524 * 312.29576 * 18 17 16 20 20 F 1.39903 * 109.46514 * 66.39823 * 19 18 17 21 21 F 1.39895 * 109.47050 * 306.40223 * 19 18 17 22 22 F 1.39896 * 109.47158 * 186.39567 * 19 18 17 23 23 C 1.46851 * 111.19541 * 61.74720 * 17 16 15 24 24 H 0.96996 * 119.99821 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99817 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.52511 * 302.31024 * 14 12 10 27 27 H 1.08994 * 109.52050 * 62.50002 * 14 12 10 28 28 H 1.08994 * 109.50103 * 177.59402 * 15 14 12 29 29 H 1.08999 * 109.50086 * 297.71267 * 15 14 12 30 30 H 1.08999 * 109.46175 * 180.80585 * 16 15 14 31 31 H 1.09002 * 109.46528 * 60.83773 * 16 15 14 32 32 H 1.09008 * 109.47007 * 192.29963 * 18 17 16 33 33 H 1.08999 * 109.46945 * 72.30004 * 18 17 16 34 34 H 1.08997 * 109.46436 * 58.27201 * 23 17 16 35 35 H 1.08997 * 109.46232 * 178.24933 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 1 0.6163 -4.9212 -0.8872 14 6 0.3665 -4.9462 1.2543 15 6 -0.3492 -6.2997 1.2774 16 6 0.6909 -7.4218 1.2416 17 7 1.5040 -7.2986 0.0250 18 6 2.4211 -8.4378 -0.1127 19 6 3.1398 -8.6778 1.2165 20 9 2.2141 -9.0976 2.1778 21 9 3.7457 -7.4901 1.6401 22 9 4.1164 -9.6650 1.0471 23 6 2.2377 -6.0267 0.0033 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.9899 -4.8485 2.1431 27 1 -0.3714 -4.1443 1.2359 28 1 -0.9422 -6.3822 2.1882 29 1 -1.0023 -6.3809 0.4086 30 1 0.1841 -8.3868 1.2436 31 1 1.3349 -7.3482 2.1180 32 1 3.1554 -8.2214 -0.8888 33 1 1.8555 -9.3286 -0.3860 34 1 2.8744 -5.9596 0.8854 35 1 2.8542 -5.9784 -0.8942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195452999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:48 Heat of formation + Delta-G solvation = -213.216322 kcal Electronic energy + Delta-G solvation = -23064.881734 eV Core-core repulsion = 19067.590414 eV Total energy + Delta-G solvation = -3997.291320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.23388 -48.70797 -48.67136 -40.91683 -39.13660 -36.02167 -35.07291 -33.20770 -31.95103 -29.76084 -27.21797 -25.39190 -24.55098 -23.53095 -21.59849 -20.65283 -19.93955 -19.59729 -19.46732 -18.40263 -17.71560 -16.86191 -16.45357 -16.07948 -15.97503 -15.59215 -15.49240 -15.35434 -15.26804 -15.05451 -14.98348 -14.80600 -14.29321 -14.19055 -13.93397 -13.52127 -13.49493 -13.18410 -12.92765 -12.82439 -12.45709 -12.23786 -12.11641 -11.81685 -11.63406 -11.53514 -11.40119 -10.27343 -10.03375 -9.58711 -8.47841 -5.97002 1.38751 1.41066 1.52013 1.78797 2.02080 2.26539 2.45048 2.82049 3.03097 3.17443 3.20119 3.37981 3.72748 3.89260 3.97175 4.07848 4.28605 4.36217 4.47926 4.50902 4.59905 4.68549 4.77223 4.93191 4.95573 5.10620 5.22458 5.38721 5.39807 5.74532 5.82209 5.98712 6.56827 7.09963 7.53594 8.08494 8.69181 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.034390 B = 0.004224 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.990399 B = 6627.158945 C = 7097.250509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.339 4.339 8 H 0.078 0.922 9 N -0.566 5.566 10 C 0.441 3.559 11 O -0.637 6.637 12 C -0.082 4.082 13 H 0.105 0.895 14 C -0.111 4.111 15 C -0.105 4.105 16 C 0.033 3.967 17 N -0.515 5.515 18 C 0.020 3.980 19 C 0.409 3.591 20 F -0.184 7.184 21 F -0.198 7.198 22 F -0.189 7.189 23 C 0.066 3.934 24 H 0.279 0.721 25 H 0.397 0.603 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.035 0.965 32 H 0.130 0.870 33 H 0.158 0.842 34 H 0.045 0.955 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 -18.135 1.045 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.468 4.468 8 H 0.096 0.904 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.525 6.525 12 C -0.104 4.104 13 H 0.123 0.877 14 C -0.149 4.149 15 C -0.143 4.143 16 C -0.093 4.093 17 N -0.236 5.236 18 C -0.110 4.110 19 C 0.353 3.647 20 F -0.166 7.166 21 F -0.180 7.180 22 F -0.170 7.170 23 C -0.062 4.062 24 H 0.088 0.912 25 H 0.231 0.769 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.129 0.871 31 H 0.053 0.947 32 H 0.149 0.851 33 H 0.176 0.824 34 H 0.063 0.937 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.988 -17.953 0.670 18.076 hybrid contribution 0.872 1.123 1.025 1.753 sum -1.116 -16.830 1.696 16.952 Atomic orbital electron populations 1.69664 1.06806 1.29459 1.49868 1.26033 0.96536 1.02352 0.96048 0.85002 0.77811 0.76667 0.78934 1.19647 1.19305 1.19828 1.19658 0.92725 0.84126 1.50326 0.90397 1.41918 1.09337 1.04623 1.64231 1.20826 0.87929 0.86276 0.82129 1.90480 1.16074 1.88259 1.57705 1.21047 0.97262 0.90623 1.01473 0.87666 1.21585 0.98168 0.99789 0.95404 1.21582 0.97264 0.91303 1.04121 1.22739 0.95778 1.01378 0.89440 1.62143 1.21879 1.00744 1.38877 1.23987 0.97364 0.98844 0.90817 1.22719 0.78060 0.73310 0.90644 1.93154 1.65371 1.90226 1.67819 1.93153 1.84928 1.47784 1.92093 1.93170 1.65143 1.63156 1.95571 1.22056 0.94364 0.87400 1.02331 0.91180 0.76885 0.93676 0.91262 0.89036 0.89519 0.87140 0.94704 0.85146 0.82415 0.93726 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.34 -19.45 9.68 84.04 0.81 -18.64 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.44 5.19 -306.99 -1.59 -31.04 16 10 C 0.44 21.43 7.11 87.66 0.62 22.05 16 11 O -0.64 -35.97 15.56 -3.07 -0.05 -36.02 16 12 C -0.08 -2.91 2.69 -11.49 -0.03 -2.94 16 13 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 14 C -0.11 -3.41 5.16 30.67 0.16 -3.25 16 15 C -0.11 -2.28 6.09 30.65 0.19 -2.09 16 16 C 0.03 0.71 3.96 86.32 0.34 1.05 16 17 N -0.52 -11.77 4.86 -896.33 -4.35 -16.12 16 18 C 0.02 0.35 5.74 86.30 0.50 0.84 16 19 C 0.41 8.92 2.83 71.98 0.20 9.12 16 20 F -0.18 -3.95 13.95 44.97 0.63 -3.33 16 21 F -0.20 -5.81 13.84 44.97 0.62 -5.19 16 22 F -0.19 -4.06 17.32 44.97 0.78 -3.29 16 23 C 0.07 2.12 3.60 86.33 0.31 2.43 16 24 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 25 H 0.40 19.64 7.38 -92.71 -0.68 18.95 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 2.17 7.66 -2.39 -0.02 2.15 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.11 1.75 7.79 -2.39 -0.02 1.73 16 31 H 0.03 0.86 5.71 -2.39 -0.01 0.84 16 32 H 0.13 2.01 7.86 -2.38 -0.02 1.99 16 33 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.04 1.65 5.48 -2.39 -0.01 1.63 16 35 H 0.08 2.52 7.93 -2.39 -0.02 2.50 16 Total: -1.00 -67.46 292.98 2.36 -65.11 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.45 Total: 25.47 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 3.57 Total: 8.54 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -5.67 Total: -96.36 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.05 Total: -36.02 kcal Atomic # 9 Polarization: -13.83 SS G_CDS: 2.03 Total: -11.80 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -67.46 2.36 -65.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195452999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.110 kcal (2) G-P(sol) polarization free energy of solvation -67.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds