Wall clock time and date at job start Tue Mar 31 2020 02:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27494 * 124.86711 * 2 1 4 4 N 1.38785 * 116.83311 * 180.20709 * 3 2 1 5 5 C 1.35165 * 113.44059 * 359.56618 * 4 3 2 6 6 N 1.32313 * 108.85278 * 180.23961 * 5 4 3 7 7 C 1.33826 * 109.09097 * 359.97438 * 6 5 4 8 8 C 1.50707 * 125.82267 * 179.97438 * 7 6 5 9 9 C 1.34467 * 108.35694 * 359.97438 * 7 6 5 10 10 C 1.50699 * 126.42845 * 179.97438 * 9 7 6 11 11 N 1.46907 * 109.46883 * 270.04064 * 10 9 7 12 12 C 1.46902 * 110.99721 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47026 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00069 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99737 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99789 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00254 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46934 * 90.00350 * 18 16 14 20 20 H 1.48498 * 109.47152 * 209.99760 * 18 16 14 21 21 H 1.48500 * 109.47165 * 330.00533 * 18 16 14 22 22 S 1.75771 * 124.86929 * 179.76278 * 2 1 3 23 23 H 1.08996 * 109.46936 * 180.25804 * 1 2 3 24 24 H 1.08993 * 109.47222 * 300.26646 * 1 2 3 25 25 H 1.08999 * 109.46736 * 60.26503 * 1 2 3 26 26 H 1.08996 * 109.46754 * 90.02967 * 8 7 6 27 27 H 1.09001 * 109.46989 * 210.02571 * 8 7 6 28 28 H 1.09000 * 109.46767 * 330.02690 * 8 7 6 29 29 H 1.08999 * 109.47052 * 30.04089 * 10 9 7 30 30 H 1.09002 * 109.47428 * 150.04740 * 10 9 7 31 31 H 1.00900 * 111.00088 * 56.04899 * 11 10 9 32 32 H 1.08996 * 109.47234 * 300.00185 * 12 11 10 33 33 H 1.08998 * 109.47169 * 59.99987 * 12 11 10 34 34 H 1.08996 * 109.47226 * 300.00123 * 13 12 11 35 35 H 1.09000 * 109.46719 * 60.00518 * 13 12 11 36 36 H 0.97003 * 120.00155 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2359 1.0461 0.0000 4 7 3.6101 0.8521 -0.0045 5 6 3.9692 -0.4510 0.0012 6 7 5.2899 -0.5305 0.0015 7 6 5.8028 0.7056 -0.0044 8 6 7.2696 1.0520 -0.0055 9 6 4.7864 1.5859 -0.0091 10 6 4.9037 3.0883 -0.0160 11 7 4.9418 3.5827 1.3669 12 6 5.0567 5.0469 1.3994 13 6 5.0941 5.5233 2.8529 14 6 5.2126 7.0253 2.8862 15 1 5.2565 7.5842 1.9631 16 6 5.2651 7.6859 4.0953 17 7 5.3680 8.9967 4.1244 18 14 5.1885 6.7194 5.6919 19 1 6.5639 6.3527 6.1149 20 1 4.5524 7.5517 6.7444 21 1 4.3885 5.4854 5.4856 22 16 2.5119 -1.4421 0.0060 23 1 -0.3633 -1.0276 0.0046 24 1 -0.3633 0.5179 0.8875 25 1 -0.3633 0.5097 -0.8924 26 1 7.6234 1.1309 -1.0334 27 1 7.4185 2.0039 0.5041 28 1 7.8275 0.2716 0.5120 29 1 5.8192 3.3789 -0.5311 30 1 4.0446 3.5175 -0.5316 31 1 5.6916 3.1499 1.8851 32 1 5.9735 5.3507 0.8942 33 1 4.1991 5.4900 0.8933 34 1 4.1775 5.2195 3.3585 35 1 5.9521 5.0802 3.3585 36 1 5.4053 9.4616 4.9750 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273070034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:57 Heat of formation + Delta-G solvation = 115.852955 kcal Electronic energy + Delta-G solvation = -18881.010736 eV Core-core repulsion = 15914.891294 eV Total energy + Delta-G solvation = -2966.119442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.67378 -38.29241 -36.24848 -33.19962 -33.05422 -31.61711 -30.14009 -29.31926 -26.99996 -25.35396 -23.82867 -22.98954 -20.69594 -20.45896 -20.23878 -18.70009 -16.85063 -16.60444 -16.41183 -15.29663 -14.75408 -14.64817 -14.47880 -14.24914 -13.62902 -13.43415 -13.28483 -13.25973 -12.93629 -12.70869 -12.50894 -12.34033 -12.06025 -11.97211 -11.40664 -11.02082 -10.90600 -10.65482 -10.19350 -10.10688 -9.91718 -9.79469 -9.26676 -9.23450 -8.54587 -8.19296 -7.96233 -6.05455 -4.03996 0.23781 0.58107 0.95103 1.61320 1.77002 2.57569 3.31650 3.39181 3.45673 3.71756 4.25888 4.45701 4.56735 4.64093 4.75254 4.89629 4.95941 5.11343 5.24292 5.29195 5.35393 5.54938 5.59803 5.72901 5.76933 5.97179 6.13705 6.21589 6.35860 6.72517 7.04847 7.12308 7.33418 7.47586 7.53257 7.69168 7.84958 8.51401 8.98237 9.56935 11.07796 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.003792 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.254031 B = 7381.320483 C = 8067.749340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.090 3.910 3 N -0.231 5.231 4 N -0.297 5.297 5 C 0.098 3.902 6 N -0.434 5.434 7 C 0.039 3.961 8 C -0.067 4.067 9 C 0.044 3.956 10 C 0.131 3.869 11 N -0.690 5.690 12 C 0.075 3.925 13 C -0.009 4.009 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.068 3.932 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 S 0.157 5.843 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.338 0.662 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.024 0.976 35 H 0.010 0.990 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 -22.342 -10.726 25.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.209 4.209 3 N -0.043 5.043 4 N -0.073 5.073 5 C -0.270 4.270 6 N -0.159 5.159 7 C -0.094 4.094 8 C -0.125 4.125 9 C -0.072 4.072 10 C 0.001 3.999 11 N -0.321 5.321 12 C -0.053 4.053 13 C -0.047 4.047 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.133 4.133 17 N -0.542 5.542 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 S 0.392 5.608 23 H 0.114 0.886 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.156 0.844 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.028 0.972 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.604 -23.073 -10.533 26.479 hybrid contribution 0.833 1.001 0.686 1.472 sum -6.771 -22.072 -9.848 25.099 Atomic orbital electron populations 1.20587 0.81595 1.05070 1.05992 1.28488 1.02448 0.91254 0.98712 1.73753 0.86889 1.24707 1.18925 1.47607 1.01799 1.06222 1.51698 1.26412 0.98435 0.87191 1.14938 1.70434 1.01461 1.24131 1.19838 1.20645 0.96228 0.87013 1.05563 1.20149 0.86965 1.02384 1.02986 1.21132 0.79674 0.95451 1.10945 1.20313 1.01935 0.85177 0.92456 1.60637 1.52340 1.08460 1.10693 1.21991 0.99442 0.83524 1.00345 1.19543 0.96821 0.96799 0.91542 1.21051 1.50717 0.89755 0.94461 0.91040 1.24992 0.94437 0.94745 0.99155 1.69914 1.50791 1.07304 1.26213 0.86762 0.78657 0.80508 0.83300 1.20309 1.21381 1.18875 1.85253 0.88933 1.03721 1.82851 0.88604 0.87817 0.87984 0.90597 0.90500 0.90251 0.92308 0.89867 0.84446 0.95565 0.91563 0.95732 0.97201 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.49 36.01 0.38 0.05 16 2 C 0.09 0.88 7.58 -14.08 -0.11 0.77 16 3 N -0.23 -3.24 11.97 32.89 0.39 -2.85 16 4 N -0.30 -4.69 4.42 -8.73 -0.04 -4.73 16 5 C 0.10 1.47 9.00 -88.73 -0.80 0.67 16 6 N -0.43 -6.92 11.32 -9.76 -0.11 -7.03 16 7 C 0.04 0.57 7.06 -83.05 -0.59 -0.02 16 8 C -0.07 -0.73 10.03 36.01 0.36 -0.37 16 9 C 0.04 0.68 6.77 -80.84 -0.55 0.13 16 10 C 0.13 1.99 5.82 -4.97 -0.03 1.96 16 11 N -0.69 -12.22 6.49 -115.05 -0.75 -12.97 16 12 C 0.07 1.51 5.62 -3.82 -0.02 1.49 16 13 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 14 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 15 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 18 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 22 S 0.16 1.58 23.35 -107.50 -2.51 -0.93 16 23 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.79 7.75 -51.93 -0.40 0.39 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.78 7.76 -51.93 -0.40 0.37 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.34 5.69 8.72 -39.29 -0.34 5.35 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 35 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 321.99 15.07 4.85 4.85 Total: -1.00 -35.43 321.99 -8.84 -44.27 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.88 Total: -1.70 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.90 Total: -9.10 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.27 Total: -54.87 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.51 Total: -0.93 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.43 -8.84 -44.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.124 kcal (2) G-P(sol) polarization free energy of solvation -35.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds