Wall clock time and date at job start Tue Mar 31 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27494 * 124.86711 * 2 1 4 4 N 1.38785 * 116.83311 * 180.20709 * 3 2 1 5 5 C 1.35165 * 113.44059 * 359.56618 * 4 3 2 6 6 N 1.32313 * 108.85278 * 180.23961 * 5 4 3 7 7 C 1.33826 * 109.09097 * 359.97438 * 6 5 4 8 8 C 1.50707 * 125.82267 * 179.97438 * 7 6 5 9 9 C 1.34467 * 108.35694 * 359.97438 * 7 6 5 10 10 C 1.50699 * 126.42845 * 179.97438 * 9 7 6 11 11 N 1.46907 * 109.46883 * 270.04064 * 10 9 7 12 12 C 1.46902 * 110.99721 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47026 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00069 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99737 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99789 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00254 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46934 * 90.00350 * 18 16 14 20 20 H 1.48498 * 109.47152 * 209.99760 * 18 16 14 21 21 H 1.48500 * 109.47165 * 330.00533 * 18 16 14 22 22 S 1.75771 * 124.86929 * 179.76278 * 2 1 3 23 23 H 1.08996 * 109.46936 * 180.25804 * 1 2 3 24 24 H 1.08993 * 109.47222 * 300.26646 * 1 2 3 25 25 H 1.08999 * 109.46736 * 60.26503 * 1 2 3 26 26 H 1.08996 * 109.46754 * 90.02967 * 8 7 6 27 27 H 1.09001 * 109.46989 * 210.02571 * 8 7 6 28 28 H 1.09000 * 109.46767 * 330.02690 * 8 7 6 29 29 H 1.08999 * 109.47052 * 30.04089 * 10 9 7 30 30 H 1.09002 * 109.47428 * 150.04740 * 10 9 7 31 31 H 1.00900 * 111.00088 * 56.04899 * 11 10 9 32 32 H 1.08996 * 109.47234 * 300.00185 * 12 11 10 33 33 H 1.08998 * 109.47169 * 59.99987 * 12 11 10 34 34 H 1.08996 * 109.47226 * 300.00123 * 13 12 11 35 35 H 1.09000 * 109.46719 * 60.00518 * 13 12 11 36 36 H 0.97003 * 120.00155 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2359 1.0461 0.0000 4 7 3.6101 0.8521 -0.0045 5 6 3.9692 -0.4510 0.0012 6 7 5.2899 -0.5305 0.0015 7 6 5.8028 0.7056 -0.0044 8 6 7.2696 1.0520 -0.0055 9 6 4.7864 1.5859 -0.0091 10 6 4.9037 3.0883 -0.0160 11 7 4.9418 3.5827 1.3669 12 6 5.0567 5.0469 1.3994 13 6 5.0941 5.5233 2.8529 14 6 5.2126 7.0253 2.8862 15 1 5.2565 7.5842 1.9631 16 6 5.2651 7.6859 4.0953 17 7 5.3680 8.9967 4.1244 18 14 5.1885 6.7194 5.6919 19 1 6.5639 6.3527 6.1149 20 1 4.5524 7.5517 6.7444 21 1 4.3885 5.4854 5.4856 22 16 2.5119 -1.4421 0.0060 23 1 -0.3633 -1.0276 0.0046 24 1 -0.3633 0.5179 0.8875 25 1 -0.3633 0.5097 -0.8924 26 1 7.6234 1.1309 -1.0334 27 1 7.4185 2.0039 0.5041 28 1 7.8275 0.2716 0.5120 29 1 5.8192 3.3789 -0.5311 30 1 4.0446 3.5175 -0.5316 31 1 5.6916 3.1499 1.8851 32 1 5.9735 5.3507 0.8942 33 1 4.1991 5.4900 0.8933 34 1 4.1775 5.2195 3.3585 35 1 5.9521 5.0802 3.3585 36 1 5.4053 9.4616 4.9750 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273070034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:56 Heat of formation + Delta-G solvation = 90.355028 kcal Electronic energy + Delta-G solvation = -18882.116409 eV Core-core repulsion = 15914.891294 eV Total energy + Delta-G solvation = -2967.225115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.69015 -39.21892 -37.72138 -35.14366 -33.93153 -33.16626 -31.33750 -30.42881 -28.11656 -26.72150 -25.08905 -24.28389 -22.37752 -21.56940 -21.19278 -19.73275 -18.98726 -17.68196 -17.43941 -16.68742 -16.33400 -15.78466 -15.44124 -15.41557 -14.95826 -14.78391 -14.53233 -14.22504 -13.98728 -13.95716 -13.57333 -13.36924 -13.18152 -13.11315 -12.90216 -12.75155 -11.97548 -11.95067 -11.80810 -11.73611 -11.50376 -11.44495 -11.19380 -10.78827 -10.23401 -9.48858 -9.05592 -8.31839 -6.36249 -0.62359 -0.28485 0.06301 0.69653 0.78916 1.34228 1.36643 1.49432 1.50755 2.34528 2.78752 3.03676 3.30500 3.59903 3.65285 3.84731 3.96125 4.17698 4.38103 4.46262 4.51028 4.59130 4.63252 4.76035 4.86300 4.86308 4.90883 4.95094 5.06152 5.22129 5.41104 5.43293 5.59935 5.97609 6.17421 6.21294 6.37618 6.45546 6.71529 7.28716 8.84718 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.003792 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.254031 B = 7381.320483 C = 8067.749340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.107 3.893 3 N -0.282 5.282 4 N -0.310 5.310 5 C 0.072 3.928 6 N -0.464 5.464 7 C 0.038 3.962 8 C -0.066 4.066 9 C 0.015 3.985 10 C 0.141 3.859 11 N -0.694 5.694 12 C 0.090 3.910 13 C -0.003 4.003 14 C -0.533 4.533 15 H 0.036 0.964 16 C 0.009 3.991 17 N -0.949 5.949 18 Si 0.951 3.049 19 H -0.264 1.264 20 H -0.282 1.282 21 H -0.255 1.255 22 S 0.211 5.789 23 H 0.129 0.871 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.344 0.656 32 H 0.032 0.968 33 H 0.055 0.945 34 H 0.016 0.984 35 H 0.020 0.980 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.937 -24.786 -10.321 27.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.190 4.190 3 N -0.095 5.095 4 N -0.084 5.084 5 C -0.295 4.295 6 N -0.190 5.190 7 C -0.095 4.095 8 C -0.124 4.124 9 C -0.101 4.101 10 C 0.012 3.988 11 N -0.327 5.327 12 C -0.038 4.038 13 C -0.041 4.041 14 C -0.571 4.571 15 H 0.054 0.946 16 C -0.189 4.189 17 N -0.589 5.589 18 Si 0.775 3.225 19 H -0.188 1.188 20 H -0.208 1.208 21 H -0.179 1.179 22 S 0.446 5.554 23 H 0.148 0.852 24 H 0.130 0.870 25 H 0.136 0.864 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.163 0.837 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.038 0.962 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.489 -25.541 -10.146 28.763 hybrid contribution 0.977 1.690 0.464 2.006 sum -7.512 -23.851 -9.682 26.815 Atomic orbital electron populations 1.20991 0.77874 1.07620 1.06990 1.29475 1.04119 0.90451 0.95004 1.73838 0.86278 1.26681 1.22716 1.47842 1.02654 1.06471 1.51474 1.27323 0.99476 0.88390 1.14341 1.70435 1.02268 1.24811 1.21443 1.21198 0.97527 0.86596 1.04201 1.20274 0.85013 1.02818 1.04258 1.21200 0.80352 0.95459 1.13121 1.20209 1.02459 0.85306 0.90846 1.60492 1.52826 1.06615 1.12737 1.21639 0.99306 0.85317 0.97584 1.19421 0.96566 0.93871 0.94270 1.21372 1.50320 0.92113 0.93312 0.94584 1.25940 0.94008 0.95713 1.03207 1.70054 1.52168 1.09220 1.27463 0.85644 0.79414 0.79116 0.78358 1.18839 1.20814 1.17869 1.85037 0.86161 1.02489 1.81734 0.85234 0.86967 0.86417 0.88922 0.89825 0.89664 0.90167 0.90935 0.83740 0.94990 0.92620 0.96589 0.96161 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.49 71.24 0.75 0.31 16 2 C 0.11 1.88 7.58 88.74 0.67 2.55 16 3 N -0.28 -7.71 11.97 -49.04 -0.59 -8.29 16 4 N -0.31 -9.68 4.42 -181.54 -0.80 -10.48 16 5 C 0.07 2.11 9.00 179.69 1.62 3.73 16 6 N -0.46 -14.63 11.32 -184.78 -2.09 -16.72 16 7 C 0.04 1.10 7.06 41.39 0.29 1.39 16 8 C -0.07 -1.36 10.03 71.24 0.71 -0.64 16 9 C 0.01 0.45 6.77 40.62 0.28 0.73 16 10 C 0.14 4.23 5.82 85.56 0.50 4.73 16 11 N -0.69 -24.13 6.49 -517.91 -3.36 -27.49 16 12 C 0.09 3.63 5.62 86.30 0.49 4.11 16 13 C 0.00 -0.17 4.30 29.85 0.13 -0.04 16 14 C -0.53 -31.18 9.66 25.60 0.25 -30.93 16 15 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 16 C 0.01 0.50 5.47 84.65 0.46 0.97 16 17 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 18 Si 0.95 45.34 27.47 68.60 1.88 47.22 16 19 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.25 -11.67 6.54 99.48 0.65 -11.02 16 22 S 0.21 3.81 23.35 -56.49 -1.32 2.50 16 23 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 24 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.08 1.59 7.75 -2.39 -0.02 1.57 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 2.03 7.76 -2.39 -0.02 2.01 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.34 11.20 8.72 -89.69 -0.78 10.42 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 35 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 36 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -78.26 321.99 0.42 -77.83 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.26 Total: 8.15 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 6.14 Total: -13.09 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -6.54 Total: -122.61 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.32 Total: 2.50 kcal Total: -78.26 0.42 -77.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.187 kcal (2) G-P(sol) polarization free energy of solvation -78.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds