Wall clock time and date at job start Tue Mar 31 2020 01:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00323 * 2 1 4 4 H 1.48502 * 109.47016 * 270.00057 * 3 2 1 5 5 H 1.48504 * 109.47029 * 29.99947 * 3 2 1 6 6 H 1.48499 * 109.47130 * 149.99621 * 3 2 1 7 7 C 1.37881 * 119.99555 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99956 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46789 * 180.02562 * 9 7 2 11 11 C 1.30151 * 120.00515 * 114.03606 * 10 9 7 12 12 O 1.35262 * 120.00390 * 172.40336 * 11 10 9 13 13 C 1.47721 * 119.99640 * 352.40181 * 11 10 9 14 14 C 1.35894 * 126.42452 * 318.91658 * 13 11 10 15 15 O 1.34394 * 106.96544 * 180.02562 * 14 13 11 16 16 C 1.34023 * 108.18063 * 0.02562 * 15 14 13 17 17 C 1.50695 * 125.39919 * 179.97438 * 16 15 14 18 18 C 1.53183 * 109.54570 * 60.02262 * 17 16 15 19 19 C 1.53090 * 109.21490 * 183.18157 * 18 17 16 20 20 O 1.42905 * 109.41463 * 57.57400 * 19 18 17 21 21 C 1.42904 * 114.10188 * 298.84221 * 20 19 18 22 22 C 1.53093 * 109.41359 * 61.15551 * 21 20 19 23 23 N 1.29996 * 109.19531 * 0.22653 * 16 15 14 24 24 H 0.97000 * 119.99734 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47360 * 59.99877 * 9 7 2 26 26 H 1.09004 * 109.46994 * 299.98933 * 9 7 2 27 27 H 0.96699 * 113.99699 * 0.02562 * 12 11 10 28 28 H 1.08000 * 126.51731 * 0.06085 * 14 13 11 29 29 H 1.09002 * 109.61232 * 180.24399 * 17 16 15 30 30 H 1.09001 * 109.52126 * 63.24367 * 18 17 16 31 31 H 1.08992 * 109.51973 * 303.12045 * 18 17 16 32 32 H 1.09001 * 109.48059 * 177.55952 * 19 18 17 33 33 H 1.09001 * 109.47920 * 297.59425 * 19 18 17 34 34 H 1.08992 * 109.48018 * 181.14100 * 21 20 19 35 35 H 1.08997 * 109.47493 * 301.17430 * 21 20 19 36 36 H 1.09007 * 109.52261 * 62.29538 * 22 21 20 37 37 H 1.08994 * 109.52160 * 182.42454 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 6 2.2760 -4.4053 1.0315 12 8 3.0401 -5.5200 0.9742 13 6 1.5246 -4.0875 2.2630 14 6 1.3810 -2.8592 2.8263 15 8 0.6275 -3.0185 3.9277 16 6 0.3165 -4.3175 4.0373 17 6 -0.5168 -4.9259 5.1356 18 6 -1.9114 -4.2920 5.1318 19 6 -2.7249 -4.8574 6.2989 20 8 -2.0355 -4.6049 7.5249 21 6 -0.7453 -5.2141 7.6051 22 6 0.1478 -4.6631 6.4905 23 7 0.8521 -4.9701 3.0488 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8904 27 1 3.4934 -5.6430 0.1290 28 1 1.7934 -1.9313 2.4584 29 1 -0.6044 -6.0006 4.9758 30 1 -2.4137 -4.5224 4.1923 31 1 -1.8204 -3.2114 5.2409 32 1 -3.7031 -4.3773 6.3264 33 1 -2.8508 -5.9321 6.1674 34 1 -0.2976 -4.9910 8.5735 35 1 -0.8454 -6.2934 7.4907 36 1 0.2812 -3.5900 6.6275 37 1 1.1184 -5.1580 6.5233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330434829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:43 Heat of formation + Delta-G solvation = -84.462041 kcal Electronic energy + Delta-G solvation = -21858.356706 eV Core-core repulsion = 18408.505332 eV Total energy + Delta-G solvation = -3449.851375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -44.53848 -40.26980 -39.65715 -36.63148 -35.94759 -35.29556 -34.28261 -32.10774 -30.78892 -29.38486 -26.55276 -25.76681 -24.56499 -24.25993 -22.77225 -21.96328 -20.68759 -18.93800 -18.61369 -18.03667 -17.61858 -17.16488 -16.97648 -16.87087 -16.33998 -15.97646 -15.69487 -15.40852 -14.91974 -14.82703 -14.42469 -14.34197 -14.05508 -13.86629 -13.35821 -12.90819 -12.76092 -12.57482 -12.49783 -12.34643 -12.22440 -11.95132 -11.89923 -11.77251 -11.34135 -10.87540 -10.60061 -10.41423 -10.33337 -9.68492 -8.29750 -6.45091 0.12940 0.89774 1.39046 1.40193 1.51246 1.53670 1.78652 2.27526 2.36526 2.84546 3.00983 3.02275 3.58213 3.63619 3.67240 3.90338 3.97004 4.03104 4.28383 4.35179 4.49013 4.52202 4.58883 4.62532 4.74894 4.75925 4.83959 4.94188 5.04058 5.05225 5.13359 5.21671 5.28404 5.59778 5.98219 6.26868 6.32989 6.44153 6.69151 7.05731 7.28151 8.79033 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.004717 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.335705 B = 5934.531628 C = 6913.646483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.192 3.808 10 N -0.573 5.573 11 C 0.403 3.597 12 O -0.464 6.464 13 C -0.040 4.040 14 C 0.004 3.996 15 O -0.197 6.197 16 C 0.195 3.805 17 C 0.013 3.987 18 C -0.154 4.154 19 C 0.068 3.932 20 O -0.400 6.400 21 C 0.065 3.935 22 C -0.149 4.149 23 N -0.474 5.474 24 H 0.270 0.730 25 H 0.010 0.990 26 H 0.006 0.994 27 H 0.419 0.581 28 H 0.226 0.774 29 H 0.130 0.870 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 -10.297 15.251 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.065 3.935 10 N -0.307 5.307 11 C 0.174 3.826 12 O -0.261 6.261 13 C -0.159 4.159 14 C -0.070 4.070 15 O -0.083 6.083 16 C -0.014 4.014 17 C -0.006 4.006 18 C -0.192 4.192 19 C -0.008 4.008 20 O -0.319 6.319 21 C -0.011 4.011 22 C -0.188 4.188 23 N -0.203 5.203 24 H 0.079 0.921 25 H 0.027 0.973 26 H 0.023 0.977 27 H 0.277 0.723 28 H 0.242 0.758 29 H 0.148 0.852 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.369 -10.725 15.064 18.643 hybrid contribution 0.438 1.791 -0.921 2.061 sum -1.931 -8.934 14.143 16.839 Atomic orbital electron populations 1.70064 1.07637 1.28443 1.49820 1.25850 0.95679 1.02857 0.93963 0.85403 0.78683 0.78106 0.78640 1.19921 1.20211 1.18713 1.21294 0.93369 0.90284 1.52494 0.92246 1.19669 0.90105 0.87946 0.95813 1.72108 1.23203 1.10178 1.25219 1.20277 0.88501 0.86681 0.87126 1.84878 1.60393 1.37269 1.43594 1.20525 1.06061 0.90723 0.98617 1.25576 0.95182 1.00923 0.85319 1.84388 1.53778 1.30938 1.39226 1.26976 0.99107 0.77353 0.97956 1.20051 0.91870 1.00691 0.88024 1.22328 0.94120 1.01366 1.01418 1.22658 0.95328 1.01100 0.81745 1.87939 1.30926 1.75609 1.37446 1.22714 0.82160 0.97504 0.98730 1.22320 1.00616 1.03141 0.92712 1.70781 1.12034 1.33260 1.04220 0.92145 0.97263 0.97657 0.72332 0.75799 0.85229 0.90128 0.91693 0.87100 0.90604 0.86698 0.90681 0.91424 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.14 13.29 21.45 0.28 -52.85 16 2 C 0.02 0.93 5.46 84.66 0.46 1.39 16 3 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.54 -29.84 8.31 25.60 0.21 -29.63 16 8 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.19 10.46 5.37 85.63 0.46 10.92 16 10 N -0.57 -27.46 10.48 -459.29 -4.81 -32.27 16 11 C 0.40 17.22 8.06 87.45 0.70 17.92 16 12 O -0.46 -16.22 13.59 -85.47 -1.16 -17.39 16 13 C -0.04 -1.69 6.09 40.47 0.25 -1.44 16 14 C 0.00 0.17 9.72 67.28 0.65 0.83 16 15 O -0.20 -7.36 10.73 -0.69 -0.01 -7.36 16 16 C 0.20 6.46 6.83 88.38 0.60 7.06 16 17 C 0.01 0.29 2.75 -11.42 -0.03 0.26 16 18 C -0.15 -3.20 5.40 30.69 0.17 -3.04 16 19 C 0.07 1.06 6.84 72.01 0.49 1.55 16 20 O -0.40 -7.39 10.77 -148.98 -1.60 -8.99 16 21 C 0.07 0.91 6.84 72.01 0.49 1.40 16 22 C -0.15 -2.73 5.41 30.69 0.17 -2.56 16 23 N -0.47 -18.34 11.36 -292.94 -3.33 -21.67 16 24 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.01 0.32 4.75 -2.39 -0.01 0.31 16 27 H 0.42 10.84 8.97 -74.06 -0.66 10.18 16 28 H 0.23 9.99 6.50 -2.91 -0.02 9.97 16 29 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.12 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -69.43 315.92 -3.53 -72.96 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.44 Total: 18.35 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 4.63 Total: 4.66 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -7.86 Total: -106.79 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -2.77 Total: -33.74 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -69.43 -3.53 -72.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330434829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.500 kcal (2) G-P(sol) polarization free energy of solvation -69.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds