Wall clock time and date at job start Tue Mar 31 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40197 * 120.36430 * 2 1 4 4 C 1.35354 * 119.94549 * 180.02562 * 3 2 1 5 5 N 1.35762 * 120.70391 * 0.02562 * 4 3 2 6 6 C 1.46499 * 119.62393 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47280 * 270.02606 * 6 5 4 8 8 C 1.52992 * 109.47069 * 60.00116 * 7 6 5 9 9 O 1.42907 * 109.46838 * 299.99860 * 7 6 5 10 10 C 1.50700 * 109.47045 * 180.02562 * 7 6 5 11 11 O 1.21290 * 119.99756 * 334.99973 * 10 7 6 12 12 N 1.34772 * 120.00030 * 154.99919 * 10 7 6 13 13 C 1.37094 * 120.00047 * 180.02562 * 12 10 7 14 14 H 1.08004 * 120.00117 * 359.97438 * 13 12 10 15 15 C 1.38952 * 120.00170 * 179.97438 * 13 12 10 16 16 N 1.31415 * 119.99792 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00165 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46643 * 60.00580 * 17 15 13 19 19 H 1.48500 * 109.47017 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47093 * 300.00288 * 17 15 13 21 21 C 1.34662 * 120.74915 * 0.02562 * 5 4 3 22 22 O 1.22063 * 119.98236 * 179.97438 * 21 5 4 23 23 C 1.36396 * 120.37105 * 180.30333 * 2 1 3 24 24 H 1.08997 * 109.47315 * 90.00084 * 1 2 3 25 25 H 1.08998 * 109.47188 * 210.00035 * 1 2 3 26 26 H 1.09003 * 109.47460 * 330.00126 * 1 2 3 27 27 H 1.07998 * 120.02681 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.64643 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.46933 * 30.02667 * 6 5 4 30 30 H 1.09000 * 109.46763 * 150.02264 * 6 5 4 31 31 H 1.08997 * 109.47635 * 60.00178 * 8 7 6 32 32 H 1.09000 * 109.46938 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.47457 * 299.99856 * 8 7 6 34 34 H 0.96692 * 113.99883 * 299.99862 * 9 7 6 35 35 H 0.97002 * 120.00388 * 359.97438 * 12 10 7 36 36 H 0.97003 * 119.99686 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.34808 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2156 1.2097 0.0000 4 6 3.5691 1.1998 -0.0005 5 7 4.2538 0.0274 -0.0016 6 6 5.7187 0.0443 -0.0027 7 6 6.2276 0.0515 -1.4456 8 6 5.7027 1.2954 -2.1652 9 8 5.7642 -1.1202 -2.1199 10 6 7.7345 0.0683 -1.4467 11 8 8.3366 0.5179 -0.4946 12 7 8.4130 -0.4164 -2.5055 13 6 9.7839 -0.4016 -2.5062 14 1 10.3201 -0.0012 -1.6585 15 6 10.4835 -0.9018 -3.5976 16 7 9.8310 -1.3885 -4.6293 17 14 12.3514 -0.8810 -3.5990 18 1 12.8560 -1.6793 -2.4530 19 1 12.8520 -1.4658 -4.8689 20 1 12.8309 0.5191 -3.4764 21 6 3.6016 -1.1507 -0.0026 22 8 4.2313 -2.1965 -0.0040 23 6 2.1966 -1.1768 -0.0062 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6820 2.1486 -0.0004 28 1 4.1102 2.1344 -0.0001 29 1 6.0721 0.9380 0.5117 30 1 6.0926 -0.8418 0.5101 31 1 6.0561 2.1891 -1.6510 32 1 6.0649 1.3003 -3.1933 33 1 4.6127 1.2829 -2.1645 34 1 6.0594 -1.9482 -1.7173 35 1 7.9315 -0.7763 -3.2667 36 1 10.3194 -1.7373 -5.3914 37 1 1.6683 -2.1188 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330953466.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:01 Heat of formation + Delta-G solvation = -93.629730 kcal Electronic energy + Delta-G solvation = -22300.214332 eV Core-core repulsion = 18849.965416 eV Total energy + Delta-G solvation = -3450.248915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40206 -38.95387 -36.89957 -36.36465 -34.93502 -34.07592 -31.26483 -31.23310 -30.02871 -28.85313 -26.25289 -25.33781 -23.59836 -22.54302 -21.25032 -19.24513 -18.12720 -17.76058 -17.43058 -16.33291 -16.13118 -15.95062 -14.92009 -14.68754 -14.43394 -14.21630 -14.07818 -13.88342 -13.50412 -13.25298 -12.96200 -12.70409 -12.31555 -12.22270 -12.01269 -11.79242 -11.74905 -11.61651 -11.44204 -11.16954 -11.08474 -10.52294 -10.45321 -10.27345 -9.79394 -9.61257 -9.56018 -8.34355 -8.07441 -7.84840 -6.50297 -3.92309 0.86316 1.92772 2.74113 3.13202 3.21628 3.25524 3.67591 3.73646 4.08804 4.42580 4.55892 4.60657 4.78615 4.84980 4.95156 5.01289 5.13856 5.19383 5.34913 5.35347 5.50012 5.64851 5.67132 5.82189 5.88853 5.95048 5.98375 6.12041 6.27513 6.33969 6.36314 6.57498 7.22251 7.45911 7.85850 8.02105 8.23131 8.49801 9.05605 9.43247 9.92210 10.65622 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039993 B = 0.003995 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.950704 B = 7006.889445 C = 7149.303092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.010 3.990 3 C -0.242 4.242 4 C 0.144 3.856 5 N -0.485 5.485 6 C 0.080 3.920 7 C 0.115 3.885 8 C -0.137 4.137 9 O -0.548 6.548 10 C 0.409 3.591 11 O -0.599 6.599 12 N -0.536 5.536 13 C -0.309 4.309 14 H 0.104 0.896 15 C 0.027 3.973 16 N -0.889 5.889 17 Si 0.933 3.067 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.520 3.480 22 O -0.549 6.549 23 C -0.251 4.251 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.386 0.614 35 H 0.400 0.600 36 H 0.275 0.725 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.683 5.874 6.261 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.006 3.994 3 C -0.266 4.266 4 C 0.016 3.984 5 N -0.194 5.194 6 C -0.042 4.042 7 C 0.070 3.930 8 C -0.195 4.195 9 O -0.354 6.354 10 C 0.194 3.806 11 O -0.486 6.486 12 N -0.171 5.171 13 C -0.438 4.438 14 H 0.122 0.878 15 C -0.176 4.176 16 N -0.529 5.529 17 Si 0.760 3.240 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.198 1.198 21 C 0.323 3.677 22 O -0.431 6.431 23 C -0.272 4.272 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.159 0.841 28 H 0.178 0.822 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.235 0.765 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.024 5.809 6.291 18.169 hybrid contribution 0.902 -0.522 -0.244 1.070 sum -15.123 5.287 6.048 17.124 Atomic orbital electron populations 1.20895 0.90695 1.03190 1.02953 1.20143 0.96495 0.92766 0.89973 1.20455 0.92383 0.98717 1.15016 1.21984 0.93482 0.90142 0.92804 1.45494 1.08917 1.06739 1.58262 1.22501 0.76375 1.06647 0.98652 1.21552 0.92436 0.88294 0.90743 1.21782 1.00956 0.94782 1.01957 1.86466 1.76821 1.15609 1.56541 1.20126 0.88243 0.86798 0.85452 1.90527 1.69617 1.52596 1.35904 1.41861 1.07114 1.51379 1.16697 1.19728 0.81076 1.38899 1.04132 0.87771 1.25358 1.01018 0.96252 0.94983 1.69634 1.36965 1.39542 1.06767 0.85880 0.81708 0.78821 0.77603 1.19714 1.20810 1.19753 1.17015 0.89097 0.82732 0.78896 1.90919 1.69184 1.30289 1.52744 1.21929 0.92646 0.99306 1.13357 0.90290 0.91050 0.91000 0.84080 0.82234 0.87297 0.87683 0.90733 0.90824 0.91903 0.76497 0.76519 0.91499 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.03 36.00 0.36 -0.46 16 2 C 0.01 0.10 5.89 -104.55 -0.62 -0.51 16 3 C -0.24 -2.24 9.71 -39.87 -0.39 -2.63 16 4 C 0.14 1.53 8.11 -16.84 -0.14 1.39 16 5 N -0.48 -6.92 2.34 -119.77 -0.28 -7.20 16 6 C 0.08 1.31 4.19 -4.04 -0.02 1.29 16 7 C 0.11 2.11 1.08 -91.78 -0.10 2.01 16 8 C -0.14 -2.14 8.13 37.15 0.30 -1.84 16 9 O -0.55 -10.61 11.08 -44.75 -0.50 -11.11 16 10 C 0.41 9.57 6.65 -10.99 -0.07 9.50 16 11 O -0.60 -15.60 15.67 5.55 0.09 -15.52 16 12 N -0.54 -13.74 5.20 -10.96 -0.06 -13.80 16 13 C -0.31 -8.57 9.68 -14.93 -0.14 -8.72 16 14 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 15 C 0.03 0.73 5.50 -17.47 -0.10 0.63 16 16 N -0.89 -24.30 13.05 55.50 0.72 -23.58 16 17 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 C 0.52 8.52 6.90 -15.45 -0.11 8.41 16 22 O -0.55 -10.91 15.38 -4.66 -0.07 -10.99 16 23 C -0.25 -3.32 9.65 -39.38 -0.38 -3.70 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 27 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.16 1.22 7.92 -52.49 -0.42 0.81 16 29 H 0.11 1.61 7.74 -51.93 -0.40 1.21 16 30 H 0.10 1.91 7.39 -51.93 -0.38 1.53 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 0.86 6.28 -51.93 -0.33 0.53 16 34 H 0.39 7.44 8.40 45.56 0.38 7.83 16 35 H 0.40 10.23 7.33 -40.82 -0.30 9.93 16 36 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.14 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 316.37 15.07 4.77 4.77 Total: -1.00 -33.09 316.37 -5.65 -38.74 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -3.91 Total: 17.49 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.39 Total: 5.38 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.39 Total: -44.57 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.48 Total: -37.61 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.09 -5.65 -38.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330953466.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.891 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds