Wall clock time and date at job start Tue Mar 31 2020 02:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40197 * 120.36430 * 2 1 4 4 C 1.35354 * 119.94549 * 180.02562 * 3 2 1 5 5 N 1.35762 * 120.70391 * 0.02562 * 4 3 2 6 6 C 1.46499 * 119.62393 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47280 * 270.02606 * 6 5 4 8 8 C 1.52992 * 109.47069 * 60.00116 * 7 6 5 9 9 O 1.42907 * 109.46838 * 299.99860 * 7 6 5 10 10 C 1.50700 * 109.47045 * 180.02562 * 7 6 5 11 11 O 1.21290 * 119.99756 * 334.99973 * 10 7 6 12 12 N 1.34772 * 120.00030 * 154.99919 * 10 7 6 13 13 C 1.37094 * 120.00047 * 180.02562 * 12 10 7 14 14 H 1.08004 * 120.00117 * 359.97438 * 13 12 10 15 15 C 1.38952 * 120.00170 * 179.97438 * 13 12 10 16 16 N 1.31415 * 119.99792 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00165 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46643 * 60.00580 * 17 15 13 19 19 H 1.48500 * 109.47017 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47093 * 300.00288 * 17 15 13 21 21 C 1.34662 * 120.74915 * 0.02562 * 5 4 3 22 22 O 1.22063 * 119.98236 * 179.97438 * 21 5 4 23 23 C 1.36396 * 120.37105 * 180.30333 * 2 1 3 24 24 H 1.08997 * 109.47315 * 90.00084 * 1 2 3 25 25 H 1.08998 * 109.47188 * 210.00035 * 1 2 3 26 26 H 1.09003 * 109.47460 * 330.00126 * 1 2 3 27 27 H 1.07998 * 120.02681 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.64643 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.46933 * 30.02667 * 6 5 4 30 30 H 1.09000 * 109.46763 * 150.02264 * 6 5 4 31 31 H 1.08997 * 109.47635 * 60.00178 * 8 7 6 32 32 H 1.09000 * 109.46938 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.47457 * 299.99856 * 8 7 6 34 34 H 0.96692 * 113.99883 * 299.99862 * 9 7 6 35 35 H 0.97002 * 120.00388 * 359.97438 * 12 10 7 36 36 H 0.97003 * 119.99686 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.34808 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2156 1.2097 0.0000 4 6 3.5691 1.1998 -0.0005 5 7 4.2538 0.0274 -0.0016 6 6 5.7187 0.0443 -0.0027 7 6 6.2276 0.0515 -1.4456 8 6 5.7027 1.2954 -2.1652 9 8 5.7642 -1.1202 -2.1199 10 6 7.7345 0.0683 -1.4467 11 8 8.3366 0.5179 -0.4946 12 7 8.4130 -0.4164 -2.5055 13 6 9.7839 -0.4016 -2.5062 14 1 10.3201 -0.0012 -1.6585 15 6 10.4835 -0.9018 -3.5976 16 7 9.8310 -1.3885 -4.6293 17 14 12.3514 -0.8810 -3.5990 18 1 12.8560 -1.6793 -2.4530 19 1 12.8520 -1.4658 -4.8689 20 1 12.8309 0.5191 -3.4764 21 6 3.6016 -1.1507 -0.0026 22 8 4.2313 -2.1965 -0.0040 23 6 2.1966 -1.1768 -0.0062 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6820 2.1486 -0.0004 28 1 4.1102 2.1344 -0.0001 29 1 6.0721 0.9380 0.5117 30 1 6.0926 -0.8418 0.5101 31 1 6.0561 2.1891 -1.6510 32 1 6.0649 1.3003 -3.1933 33 1 4.6127 1.2829 -2.1645 34 1 6.0594 -1.9482 -1.7173 35 1 7.9315 -0.7763 -3.2667 36 1 10.3194 -1.7373 -5.3914 37 1 1.6683 -2.1188 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330953466.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:00 Heat of formation + Delta-G solvation = -118.408659 kcal Electronic energy + Delta-G solvation = -22301.288827 eV Core-core repulsion = 18849.965416 eV Total energy + Delta-G solvation = -3451.323410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.52429 -40.67034 -38.02128 -37.96683 -36.27495 -35.87897 -33.28481 -32.58375 -30.99348 -29.80824 -27.47733 -27.20919 -24.58394 -24.01643 -22.32995 -20.95321 -20.09691 -19.27347 -18.44575 -17.60662 -17.55461 -16.91386 -16.90144 -16.26765 -15.89078 -15.77997 -15.15989 -15.07402 -14.90284 -14.63010 -14.11742 -13.59055 -13.50211 -13.49203 -13.37189 -13.26338 -13.01029 -12.95519 -12.80320 -12.67425 -12.50052 -12.37949 -12.15811 -11.74450 -11.57106 -10.98271 -10.63486 -10.16560 -10.12321 -8.89947 -8.53839 -6.05414 -0.04744 0.98748 1.34053 1.38810 1.50438 1.61680 1.85097 2.24602 2.66433 2.94999 3.10834 3.17991 3.54993 3.61371 3.79606 3.86563 4.06822 4.20058 4.23759 4.40293 4.45603 4.56052 4.65082 4.72215 4.85365 4.88559 4.96249 5.06532 5.17349 5.30034 5.33049 5.54127 5.73283 5.85567 6.17846 6.31800 6.51422 6.99972 7.09640 7.42475 7.93253 8.62123 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039993 B = 0.003995 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.950704 B = 7006.889445 C = 7149.303092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.031 3.969 3 C -0.225 4.225 4 C 0.128 3.872 5 N -0.485 5.485 6 C 0.092 3.908 7 C 0.122 3.878 8 C -0.132 4.132 9 O -0.552 6.552 10 C 0.412 3.588 11 O -0.626 6.626 12 N -0.550 5.550 13 C -0.344 4.344 14 H 0.086 0.914 15 C -0.010 4.010 16 N -0.915 5.915 17 Si 0.999 3.001 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.266 1.266 21 C 0.501 3.499 22 O -0.607 6.607 23 C -0.287 4.287 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.186 0.814 28 H 0.196 0.804 29 H 0.128 0.872 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.382 0.618 35 H 0.398 0.602 36 H 0.280 0.720 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.534 8.325 6.346 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.027 3.973 3 C -0.248 4.248 4 C 0.002 3.998 5 N -0.193 5.193 6 C -0.031 4.031 7 C 0.077 3.923 8 C -0.189 4.189 9 O -0.359 6.359 10 C 0.198 3.802 11 O -0.515 6.515 12 N -0.184 5.184 13 C -0.473 4.473 14 H 0.104 0.896 15 C -0.211 4.211 16 N -0.554 5.554 17 Si 0.821 3.179 18 H -0.196 1.196 19 H -0.195 1.195 20 H -0.191 1.191 21 C 0.307 3.693 22 O -0.495 6.495 23 C -0.309 4.309 24 H 0.110 0.890 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.203 0.797 28 H 0.213 0.787 29 H 0.146 0.854 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.231 0.769 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.927 8.306 6.377 20.762 hybrid contribution 1.313 -1.194 -0.210 1.787 sum -16.614 7.112 6.167 19.096 Atomic orbital electron populations 1.21019 0.87832 1.04729 1.04134 1.20628 0.98513 0.91957 0.86227 1.21048 0.91879 0.99944 1.11889 1.22723 0.94500 0.89847 0.92775 1.45364 1.07797 1.07654 1.58515 1.22199 0.78109 1.06127 0.96689 1.21568 0.88771 0.89163 0.92807 1.21822 1.02470 0.93772 1.00853 1.86461 1.76560 1.15856 1.57002 1.21081 0.90531 0.84594 0.84044 1.90493 1.71116 1.53263 1.36597 1.41933 1.06735 1.52381 1.17379 1.19776 0.82302 1.40763 1.04451 0.89557 1.26209 1.05562 0.95207 0.94161 1.69711 1.38714 1.39775 1.07213 0.84910 0.75950 0.79050 0.77963 1.19566 1.19472 1.19080 1.17563 0.90257 0.82633 0.78878 1.90874 1.70256 1.32219 1.56122 1.21891 0.91264 1.00865 1.16871 0.88990 0.90718 0.88367 0.79674 0.78720 0.85448 0.90590 0.88494 0.92286 0.89339 0.76907 0.76800 0.91018 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.03 71.23 0.71 -0.43 16 2 C 0.03 0.53 5.89 -19.82 -0.12 0.41 16 3 C -0.23 -3.08 9.71 22.08 0.21 -2.86 16 4 C 0.13 2.24 8.11 83.42 0.68 2.91 16 5 N -0.48 -13.36 2.34 -650.97 -1.52 -14.89 16 6 C 0.09 3.00 4.19 86.38 0.36 3.36 16 7 C 0.12 4.50 1.08 -11.54 -0.01 4.49 16 8 C -0.13 -3.88 8.13 71.98 0.58 -3.29 16 9 O -0.55 -22.17 11.08 -139.88 -1.55 -23.72 16 10 C 0.41 19.74 6.65 87.66 0.58 20.33 16 11 O -0.63 -33.33 15.67 -3.06 -0.05 -33.38 16 12 N -0.55 -29.17 5.20 -306.99 -1.60 -30.76 16 13 C -0.34 -19.67 9.68 84.04 0.81 -18.86 16 14 H 0.09 5.15 7.16 -2.91 -0.02 5.13 16 15 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 16 N -0.91 -50.61 13.05 21.66 0.28 -50.32 16 17 Si 1.00 42.87 29.55 68.60 2.03 44.90 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 21 C 0.50 16.76 6.90 84.82 0.59 17.35 16 22 O -0.61 -25.79 15.38 3.58 0.06 -25.73 16 23 C -0.29 -7.49 9.65 22.40 0.22 -7.27 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 26 H 0.10 0.48 8.10 -2.39 -0.02 0.46 16 27 H 0.19 0.99 8.06 -2.91 -0.02 0.96 16 28 H 0.20 1.98 7.92 -2.91 -0.02 1.95 16 29 H 0.13 3.62 7.74 -2.39 -0.02 3.60 16 30 H 0.08 2.92 7.39 -2.39 -0.02 2.91 16 31 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.09 2.15 6.28 -2.39 -0.01 2.13 16 34 H 0.38 15.84 8.40 -74.06 -0.62 15.22 16 35 H 0.40 21.13 7.33 -92.71 -0.68 20.45 16 36 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -76.06 316.37 2.55 -73.51 By element: Atomic # 1 Polarization: 44.55 SS G_CDS: -0.19 Total: 44.36 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 5.09 Total: 16.04 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -2.84 Total: -95.98 kcal Atomic # 8 Polarization: -81.29 SS G_CDS: -1.54 Total: -82.83 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -76.06 2.55 -73.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330953466.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.898 kcal (2) G-P(sol) polarization free energy of solvation -76.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds