Wall clock time and date at job start Tue Mar 31 2020 02:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30182 * 126.79973 * 2 1 4 4 O 1.20924 * 111.60425 * 180.25004 * 3 2 1 5 5 C 1.34042 * 111.56528 * 359.75068 * 4 3 2 6 6 C 1.50701 * 126.77069 * 179.97438 * 5 4 3 7 7 C 1.35445 * 106.45055 * 359.97438 * 5 4 3 8 8 C 1.50697 * 128.00880 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46672 * 90.00210 * 8 7 5 10 10 O 1.21282 * 120.00222 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00120 * 179.97438 * 9 8 7 12 12 C 1.47067 * 136.05152 * 359.63028 * 11 9 8 13 13 C 1.53503 * 87.98291 * 207.37706 * 12 11 9 14 14 O 1.42901 * 114.20684 * 87.52078 * 13 12 11 15 15 C 1.50705 * 114.20461 * 220.34453 * 13 12 11 16 16 H 1.08000 * 119.99726 * 93.59837 * 15 13 12 17 17 C 1.37873 * 119.99976 * 273.59862 * 15 13 12 18 18 N 1.31519 * 120.00089 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99825 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47337 * 89.99938 * 19 17 15 21 21 H 1.48507 * 109.47101 * 210.00018 * 19 17 15 22 22 H 1.48504 * 109.47204 * 329.99508 * 19 17 15 23 23 C 1.47066 * 136.06263 * 180.02562 * 11 9 8 24 24 H 1.09004 * 109.46883 * 270.15924 * 1 2 3 25 25 H 1.09000 * 109.47589 * 30.16613 * 1 2 3 26 26 H 1.08999 * 109.46776 * 150.16321 * 1 2 3 27 27 H 1.08994 * 109.47203 * 269.99659 * 6 5 4 28 28 H 1.09000 * 109.47616 * 30.00343 * 6 5 4 29 29 H 1.09008 * 109.46801 * 150.00185 * 6 5 4 30 30 H 1.08990 * 109.47177 * 330.00605 * 8 7 5 31 31 H 1.09001 * 109.47163 * 209.99857 * 8 7 5 32 32 H 1.09003 * 113.46750 * 322.15352 * 12 11 9 33 33 H 1.09000 * 113.47312 * 92.59797 * 12 11 9 34 34 H 0.96702 * 114.00029 * 86.39570 * 14 13 12 35 35 H 0.96998 * 119.99623 * 179.97438 * 18 17 15 36 36 H 1.09001 * 113.46506 * 267.40576 * 23 11 9 37 37 H 1.08997 * 113.46560 * 37.84028 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 -0.0049 5 6 3.6024 -0.6067 -0.0035 6 6 4.9022 -1.3693 -0.0088 7 6 2.3540 -1.1320 0.0037 8 6 1.9592 -2.5863 0.0076 9 6 1.8351 -3.0693 1.4297 10 8 2.0459 -2.3074 2.3495 11 7 1.4887 -4.3476 1.6795 12 6 1.1559 -5.5314 0.8728 13 6 0.3030 -6.0262 2.0493 14 8 -1.0428 -5.5460 2.0401 15 6 0.4088 -7.5069 2.3094 16 1 1.1228 -7.8790 3.0292 17 6 -0.4060 -8.3863 1.6285 18 7 -1.2751 -7.9331 0.7516 19 14 -0.2754 -10.2215 1.9515 20 1 -1.2034 -10.5985 3.0477 21 1 -0.6357 -10.9679 0.7192 22 1 1.1169 -10.5572 2.3441 23 6 1.2704 -5.1707 2.8785 24 1 -0.3633 0.0029 1.0277 25 1 -0.3634 0.8885 -0.5164 26 1 -0.3633 -0.8915 -0.5113 27 1 5.2104 -1.5549 -1.0377 28 1 5.6686 -0.7848 0.5002 29 1 4.7678 -2.3200 0.5073 30 1 2.7202 -3.1707 -0.5094 31 1 1.0024 -2.7044 -0.5011 32 1 0.5729 -5.2994 -0.0185 33 1 2.0149 -6.1682 0.6614 34 1 -1.6499 -6.0870 1.5168 35 1 -1.8480 -8.5520 0.2723 36 1 2.1601 -5.7112 3.2018 37 1 0.7850 -4.6321 3.6923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331772275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:32 Heat of formation + Delta-G solvation = 6.939897 kcal Electronic energy + Delta-G solvation = -22024.476078 eV Core-core repulsion = 18578.588189 eV Total energy + Delta-G solvation = -3445.887889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.79100 -39.64900 -37.61744 -35.09239 -34.05186 -33.56437 -32.24749 -30.34232 -28.63306 -28.36799 -26.97656 -25.23344 -25.09200 -21.93216 -20.32114 -19.92645 -18.31553 -17.65475 -17.37814 -16.85216 -16.24390 -15.43848 -15.17218 -14.92044 -14.34600 -14.09172 -13.83211 -13.42883 -13.30470 -13.06281 -12.88346 -12.79219 -12.50726 -12.43270 -12.16740 -12.10419 -11.68046 -11.60792 -11.11908 -11.05912 -10.85606 -10.52992 -10.32097 -9.85776 -9.63644 -9.30306 -8.98742 -8.81330 -8.45093 -7.90564 -6.45928 -4.56337 1.55402 2.28753 3.10884 3.12443 3.18051 3.19590 3.21844 3.58030 4.13605 4.27665 4.52615 4.76838 4.84323 4.96469 5.06698 5.27903 5.32503 5.40378 5.50730 5.55487 5.61724 5.69606 5.77760 5.84350 5.88237 5.99478 6.12722 6.24305 6.35748 6.44587 6.57960 6.62513 7.04976 7.57530 7.74739 8.38981 8.44253 8.48590 8.70613 9.15426 9.43222 10.60785 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033491 B = 0.003945 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.854112 B = 7095.803376 C = 7406.471544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.035 3.965 3 N -0.372 5.372 4 O 0.093 5.907 5 C -0.024 4.024 6 C -0.072 4.072 7 C -0.175 4.175 8 C -0.057 4.057 9 C 0.536 3.464 10 O -0.556 6.556 11 N -0.636 5.636 12 C 0.070 3.930 13 C 0.240 3.760 14 O -0.571 6.571 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.899 5.899 19 Si 0.909 3.091 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.107 3.893 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.394 0.606 35 H 0.274 0.726 36 H 0.085 0.915 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.932 6.764 -5.511 11.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 N -0.080 5.080 4 O 0.029 5.971 5 C -0.087 4.087 6 C -0.129 4.129 7 C -0.179 4.179 8 C -0.097 4.097 9 C 0.325 3.675 10 O -0.436 6.436 11 N -0.369 5.369 12 C -0.053 4.053 13 C 0.198 3.802 14 O -0.385 6.385 15 C -0.572 4.572 16 H 0.091 0.909 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.736 3.264 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.015 4.015 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.250 0.750 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.999 9.104 -4.831 12.458 hybrid contribution -0.294 -2.223 -0.342 2.268 sum 6.704 6.881 -5.173 10.912 Atomic orbital electron populations 1.20173 0.86060 1.03421 1.03731 1.23362 0.98858 0.88392 1.01748 1.73772 0.89246 1.23864 1.21085 1.84745 1.21694 1.22386 1.68255 1.24115 0.98060 0.83786 1.02771 1.20313 0.90107 0.98831 1.03673 1.20305 0.91841 0.96173 1.09554 1.19798 1.04290 0.89786 0.95804 1.19813 0.76750 0.80450 0.90485 1.90662 1.51930 1.54355 1.46643 1.49722 1.66194 1.07855 1.13152 1.24242 0.99279 0.82895 0.98857 1.19533 0.80768 0.90869 0.89032 1.86050 1.19478 1.57090 1.75843 1.21438 1.21437 0.89983 1.24380 0.90916 1.25072 0.94143 1.00207 0.93563 1.69259 1.22736 1.36105 1.25811 0.86312 0.78847 0.83275 0.77995 1.20216 1.20885 1.19515 1.23318 0.98203 0.89962 0.90016 0.89927 0.90684 0.90027 0.89503 0.89833 0.89204 0.88029 0.87754 0.91698 0.89974 0.74956 0.91539 0.89707 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.39 36.00 0.37 -0.63 16 2 C 0.04 0.56 7.33 -82.10 -0.60 -0.04 16 3 N -0.37 -6.17 12.07 33.43 0.40 -5.76 16 4 O 0.09 1.42 11.20 17.17 0.19 1.61 16 5 C -0.02 -0.33 7.49 -35.30 -0.26 -0.60 16 6 C -0.07 -0.69 10.25 36.01 0.37 -0.33 16 7 C -0.17 -2.68 4.81 -104.42 -0.50 -3.19 16 8 C -0.06 -0.84 5.78 -29.04 -0.17 -1.01 16 9 C 0.54 10.35 8.07 -10.98 -0.09 10.26 16 10 O -0.56 -12.61 16.81 5.56 0.09 -12.52 16 11 N -0.64 -12.73 3.69 -185.22 -0.68 -13.41 16 12 C 0.07 1.40 7.84 -8.50 -0.07 1.34 16 13 C 0.24 5.52 1.58 -91.27 -0.14 5.37 16 14 O -0.57 -14.28 13.54 -35.23 -0.48 -14.76 16 15 C -0.53 -12.86 8.69 -34.44 -0.30 -13.16 16 16 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 17 C 0.07 1.74 5.40 -17.82 -0.10 1.64 16 18 N -0.90 -21.91 11.01 55.43 0.61 -21.30 16 19 Si 0.91 18.72 29.54 -169.99 -5.02 13.70 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C 0.11 2.26 8.03 -8.52 -0.07 2.20 16 24 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.97 7.65 -51.93 -0.40 0.57 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.91 8.06 -51.92 -0.42 0.49 16 30 H 0.10 1.24 8.08 -51.93 -0.42 0.82 16 31 H 0.10 1.44 7.65 -51.93 -0.40 1.04 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 34 H 0.39 9.92 6.33 45.56 0.29 10.21 16 35 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 36 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -29.50 323.76 -5.83 -35.33 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -4.27 Total: 10.36 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.56 Total: 1.86 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.33 Total: -40.48 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.19 Total: -25.66 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.50 -5.83 -35.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331772275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.269 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds