Wall clock time and date at job start Tue Mar 31 2020 02:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30182 * 126.79973 * 2 1 4 4 O 1.20924 * 111.60425 * 180.25004 * 3 2 1 5 5 C 1.34042 * 111.56528 * 359.75068 * 4 3 2 6 6 C 1.50701 * 126.77069 * 179.97438 * 5 4 3 7 7 C 1.35445 * 106.45055 * 359.97438 * 5 4 3 8 8 C 1.50697 * 128.00880 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46672 * 90.00210 * 8 7 5 10 10 O 1.21282 * 120.00222 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00120 * 179.97438 * 9 8 7 12 12 C 1.47067 * 136.05152 * 359.63028 * 11 9 8 13 13 C 1.53503 * 87.98291 * 207.37706 * 12 11 9 14 14 O 1.42901 * 114.20684 * 87.52078 * 13 12 11 15 15 C 1.50705 * 114.20461 * 220.34453 * 13 12 11 16 16 H 1.08000 * 119.99726 * 93.59837 * 15 13 12 17 17 C 1.37873 * 119.99976 * 273.59862 * 15 13 12 18 18 N 1.31519 * 120.00089 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99825 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47337 * 89.99938 * 19 17 15 21 21 H 1.48507 * 109.47101 * 210.00018 * 19 17 15 22 22 H 1.48504 * 109.47204 * 329.99508 * 19 17 15 23 23 C 1.47066 * 136.06263 * 180.02562 * 11 9 8 24 24 H 1.09004 * 109.46883 * 270.15924 * 1 2 3 25 25 H 1.09000 * 109.47589 * 30.16613 * 1 2 3 26 26 H 1.08999 * 109.46776 * 150.16321 * 1 2 3 27 27 H 1.08994 * 109.47203 * 269.99659 * 6 5 4 28 28 H 1.09000 * 109.47616 * 30.00343 * 6 5 4 29 29 H 1.09008 * 109.46801 * 150.00185 * 6 5 4 30 30 H 1.08990 * 109.47177 * 330.00605 * 8 7 5 31 31 H 1.09001 * 109.47163 * 209.99857 * 8 7 5 32 32 H 1.09003 * 113.46750 * 322.15352 * 12 11 9 33 33 H 1.09000 * 113.47312 * 92.59797 * 12 11 9 34 34 H 0.96702 * 114.00029 * 86.39570 * 14 13 12 35 35 H 0.96998 * 119.99623 * 179.97438 * 18 17 15 36 36 H 1.09001 * 113.46506 * 267.40576 * 23 11 9 37 37 H 1.08997 * 113.46560 * 37.84028 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 -0.0049 5 6 3.6024 -0.6067 -0.0035 6 6 4.9022 -1.3693 -0.0088 7 6 2.3540 -1.1320 0.0037 8 6 1.9592 -2.5863 0.0076 9 6 1.8351 -3.0693 1.4297 10 8 2.0459 -2.3074 2.3495 11 7 1.4887 -4.3476 1.6795 12 6 1.1559 -5.5314 0.8728 13 6 0.3030 -6.0262 2.0493 14 8 -1.0428 -5.5460 2.0401 15 6 0.4088 -7.5069 2.3094 16 1 1.1228 -7.8790 3.0292 17 6 -0.4060 -8.3863 1.6285 18 7 -1.2751 -7.9331 0.7516 19 14 -0.2754 -10.2215 1.9515 20 1 -1.2034 -10.5985 3.0477 21 1 -0.6357 -10.9679 0.7192 22 1 1.1169 -10.5572 2.3441 23 6 1.2704 -5.1707 2.8785 24 1 -0.3633 0.0029 1.0277 25 1 -0.3634 0.8885 -0.5164 26 1 -0.3633 -0.8915 -0.5113 27 1 5.2104 -1.5549 -1.0377 28 1 5.6686 -0.7848 0.5002 29 1 4.7678 -2.3200 0.5073 30 1 2.7202 -3.1707 -0.5094 31 1 1.0024 -2.7044 -0.5011 32 1 0.5729 -5.2994 -0.0185 33 1 2.0149 -6.1682 0.6614 34 1 -1.6499 -6.0870 1.5168 35 1 -1.8480 -8.5520 0.2723 36 1 2.1601 -5.7112 3.2018 37 1 0.7850 -4.6321 3.6923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331772275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:31 Heat of formation + Delta-G solvation = -13.112111 kcal Electronic energy + Delta-G solvation = -22025.345599 eV Core-core repulsion = 18578.588189 eV Total energy + Delta-G solvation = -3446.757409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.94146 -41.26476 -39.23153 -36.29280 -35.84675 -34.62341 -34.09959 -31.66354 -29.92612 -29.59103 -28.13655 -26.90557 -26.70285 -23.21304 -21.82380 -21.12859 -19.90637 -19.26430 -18.72004 -18.04623 -17.77399 -17.16641 -16.66227 -16.43861 -15.95063 -15.38196 -15.09405 -14.85869 -14.38032 -14.31858 -14.08099 -14.01522 -13.87239 -13.69985 -13.46138 -13.37980 -13.17965 -12.94944 -12.77693 -12.73452 -12.19672 -12.12934 -11.95847 -11.43171 -11.04244 -10.82181 -10.62594 -10.24469 -10.06767 -9.56175 -8.25461 -6.41994 0.45552 1.09934 1.49051 1.53338 1.61187 1.63743 2.02679 2.19837 2.43180 2.97298 3.17056 3.49434 3.57262 3.74850 3.82132 3.95450 4.19048 4.31253 4.41583 4.48798 4.54354 4.57910 4.65129 4.66716 4.67999 4.77662 4.85420 4.86141 4.96370 4.97788 5.09858 5.22519 5.28312 5.75606 5.93803 6.63887 6.90447 7.15748 7.26223 7.32305 7.51983 8.80590 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033491 B = 0.003945 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.854112 B = 7095.803376 C = 7406.471544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 N -0.397 5.397 4 O 0.085 5.915 5 C -0.014 4.014 6 C -0.073 4.073 7 C -0.202 4.202 8 C -0.044 4.044 9 C 0.533 3.467 10 O -0.595 6.595 11 N -0.636 5.636 12 C 0.088 3.912 13 C 0.216 3.784 14 O -0.588 6.588 15 C -0.552 4.552 16 H 0.074 0.926 17 C 0.035 3.965 18 N -0.917 5.917 19 Si 0.968 3.032 20 H -0.282 1.282 21 H -0.281 1.281 22 H -0.265 1.265 23 C 0.106 3.894 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.390 0.610 35 H 0.276 0.724 36 H 0.104 0.896 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.222 5.873 -6.661 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 N -0.107 5.107 4 O 0.024 5.976 5 C -0.077 4.077 6 C -0.130 4.130 7 C -0.206 4.206 8 C -0.083 4.083 9 C 0.324 3.676 10 O -0.477 6.477 11 N -0.369 5.369 12 C -0.035 4.035 13 C 0.175 3.825 14 O -0.401 6.401 15 C -0.590 4.590 16 H 0.092 0.908 17 C -0.166 4.166 18 N -0.558 5.558 19 Si 0.793 3.207 20 H -0.208 1.208 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.017 4.017 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.113 0.887 27 H 0.137 0.863 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.152 0.848 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.308 8.218 -5.992 13.132 hybrid contribution -0.688 -1.915 0.068 2.036 sum 7.620 6.302 -5.924 11.527 Atomic orbital electron populations 1.20253 0.84859 1.04880 1.03412 1.23839 0.99999 0.88658 1.01286 1.73756 0.89780 1.24615 1.22508 1.84712 1.21333 1.23268 1.68314 1.24882 0.99389 0.83265 1.00209 1.20559 0.88336 0.98166 1.05896 1.20474 0.92461 0.96280 1.11389 1.19778 1.06048 0.89805 0.92708 1.20614 0.75419 0.79499 0.92033 1.90643 1.53564 1.55075 1.48373 1.49754 1.66353 1.08300 1.12507 1.24027 0.99149 0.82660 0.97666 1.19834 0.80297 0.90976 0.91409 1.86037 1.20684 1.57304 1.76053 1.21668 1.21878 0.90759 1.24703 0.90796 1.25713 0.93846 1.03631 0.93367 1.69316 1.23059 1.37164 1.26225 0.85400 0.78785 0.78985 0.77538 1.20758 1.20610 1.18880 1.23325 0.98474 0.90020 0.89881 0.90999 0.89126 0.88749 0.86304 0.88325 0.89363 0.84789 0.86585 0.91316 0.88234 0.75454 0.91356 0.87811 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.98 10.39 71.23 0.74 -1.24 16 2 C 0.02 0.65 7.33 43.58 0.32 0.97 16 3 N -0.40 -13.02 12.07 -49.54 -0.60 -13.62 16 4 O 0.09 2.54 11.20 71.62 0.80 3.34 16 5 C -0.01 -0.36 7.49 25.04 0.19 -0.17 16 6 C -0.07 -1.18 10.25 71.24 0.73 -0.45 16 7 C -0.20 -5.90 4.81 -19.74 -0.10 -5.99 16 8 C -0.04 -1.20 5.78 29.10 0.17 -1.03 16 9 C 0.53 19.93 8.07 87.66 0.71 20.64 16 10 O -0.59 -26.80 16.81 -3.04 -0.05 -26.85 16 11 N -0.64 -24.68 3.69 -858.79 -3.17 -27.85 16 12 C 0.09 3.35 7.84 83.18 0.65 4.00 16 13 C 0.22 9.82 1.58 -11.21 -0.02 9.81 16 14 O -0.59 -29.58 13.54 -148.98 -2.02 -31.59 16 15 C -0.55 -26.12 8.69 25.60 0.22 -25.89 16 16 H 0.07 3.39 7.81 -2.91 -0.02 3.36 16 17 C 0.03 1.64 5.40 84.65 0.46 2.09 16 18 N -0.92 -44.09 11.01 21.45 0.24 -43.85 16 19 Si 0.97 37.51 29.54 68.60 2.03 39.54 16 20 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 C 0.11 4.42 8.03 83.17 0.67 5.09 16 24 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.09 2.13 7.65 -2.39 -0.02 2.12 16 27 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.52 8.06 -2.38 -0.02 1.50 16 30 H 0.13 2.78 8.08 -2.39 -0.02 2.76 16 31 H 0.12 2.93 7.65 -2.39 -0.02 2.91 16 32 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.10 3.46 8.10 -2.39 -0.02 3.44 16 34 H 0.39 19.82 6.33 -74.06 -0.47 19.35 16 35 H 0.28 12.61 8.31 -92.71 -0.77 11.84 16 36 H 0.10 3.88 8.10 -2.39 -0.02 3.86 16 37 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -62.98 323.76 2.60 -60.39 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.63 Total: 32.69 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 4.74 Total: 7.80 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -3.53 Total: -85.32 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -1.27 Total: -55.10 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -62.98 2.60 -60.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331772275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.274 kcal (2) G-P(sol) polarization free energy of solvation -62.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds