Wall clock time and date at job start Tue Mar 31 2020 01:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00080 * 2 1 4 4 H 1.48496 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47052 * 299.99473 * 3 2 1 6 6 H 1.48496 * 109.47493 * 59.99251 * 3 2 1 7 7 C 1.37871 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00719 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00119 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47437 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00089 * 180.02562 * 10 9 7 12 12 O 1.21594 * 119.99619 * 5.08095 * 11 10 9 13 13 N 1.34771 * 120.00011 * 185.07925 * 11 10 9 14 14 C 1.47151 * 120.98440 * 355.03180 * 13 11 10 15 15 C 1.53302 * 108.38366 * 129.44215 * 14 13 11 16 16 O 1.43048 * 109.25284 * 52.30700 * 15 14 13 17 17 C 1.42962 * 114.10986 * 297.45954 * 16 15 14 18 18 H 1.09003 * 109.51400 * 302.59679 * 17 16 15 19 19 C 1.50705 * 109.51261 * 182.49959 * 17 16 15 20 20 C 1.34509 * 125.78768 * 144.81103 * 19 17 16 21 21 C 1.41387 * 106.84016 * 179.89054 * 20 19 17 22 22 C 1.34512 * 106.83855 * 0.37705 * 21 20 19 23 23 O 1.34302 * 125.78670 * 325.12396 * 19 17 16 24 24 C 1.47150 * 120.97907 * 175.01082 * 13 11 10 25 25 H 0.96997 * 119.99787 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46777 * 59.99893 * 9 7 2 27 27 H 1.08997 * 109.46766 * 300.00452 * 9 7 2 28 28 H 0.96997 * 119.99827 * 359.97438 * 10 9 7 29 29 H 1.08991 * 109.68432 * 249.16429 * 14 13 11 30 30 H 1.09004 * 109.67706 * 9.68573 * 14 13 11 31 31 H 1.09001 * 109.51011 * 172.23141 * 15 14 13 32 32 H 1.09002 * 109.51152 * 292.33027 * 15 14 13 33 33 H 1.08001 * 126.58433 * 0.02972 * 20 19 17 34 34 H 1.07997 * 126.58228 * 180.17136 * 21 20 19 35 35 H 1.08006 * 125.79297 * 179.79587 * 22 21 20 36 36 H 1.08999 * 109.68547 * 110.83545 * 24 13 11 37 37 H 1.08998 * 109.71932 * 350.29334 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2127 6 1 1.8904 2.3966 1.2123 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5623 -5.1068 -0.0937 13 7 2.6253 -5.9062 0.1033 14 6 4.0772 -5.6668 0.1088 15 6 4.6837 -6.4006 1.3104 16 8 4.2660 -7.7686 1.2876 17 6 2.8533 -7.9499 1.4109 18 1 2.5059 -7.4864 2.3343 19 6 2.5351 -9.4227 1.4364 20 6 1.5557 -10.0036 2.1523 21 6 1.6139 -11.3893 1.8774 22 6 2.6309 -11.5732 1.0163 23 8 3.1852 -10.3786 0.7527 24 6 2.1530 -7.2954 0.2145 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 3.1567 -3.4354 0.0002 29 1 4.5156 -6.0478 -0.8135 30 1 4.2726 -4.5978 0.1940 31 1 5.7713 -6.3514 1.2560 32 1 4.3437 -5.9309 2.2334 33 1 0.8571 -9.5067 2.8092 34 1 0.9683 -12.1538 2.2835 35 1 2.9477 -12.5208 0.6061 36 1 2.3976 -7.8405 -0.6972 37 1 1.0742 -7.3057 0.3700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335767423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:26 Heat of formation + Delta-G solvation = -43.095108 kcal Electronic energy + Delta-G solvation = -21669.776269 eV Core-core repulsion = 18221.718699 eV Total energy + Delta-G solvation = -3448.057570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.72485 -40.15282 -38.26592 -34.52923 -34.36141 -33.36197 -32.60054 -32.06069 -29.22546 -27.97872 -26.44349 -24.37016 -22.99097 -22.03774 -21.73743 -20.53402 -19.32607 -18.40929 -17.60836 -16.65296 -16.15991 -16.06620 -15.72640 -15.49586 -15.18436 -14.92288 -14.61649 -14.04408 -13.56326 -13.42636 -13.18860 -12.96522 -12.82777 -12.39939 -12.12844 -11.87835 -11.77368 -11.64058 -10.95685 -10.95318 -10.92587 -10.32994 -10.29000 -10.07426 -9.48316 -9.37693 -8.82125 -8.75751 -8.38450 -7.80091 -6.18115 -4.25009 1.51079 2.41265 2.73612 3.06098 3.22284 3.29657 3.32483 3.41536 3.78649 4.27874 4.46881 4.57382 4.67406 4.79622 4.88329 4.91335 5.02786 5.10551 5.12242 5.18238 5.46366 5.60244 5.60647 5.68993 5.74124 5.86007 5.88991 6.28207 6.53286 6.79054 7.00181 7.04799 7.44195 7.47913 7.53177 7.78807 7.97769 8.69896 8.83112 9.23242 9.43047 10.92147 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039358 B = 0.003346 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.255015 B = 8366.397600 C = 8826.631342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.265 3.735 10 N -0.727 5.727 11 C 0.699 3.301 12 O -0.593 6.593 13 N -0.642 5.642 14 C 0.076 3.924 15 C 0.049 3.951 16 O -0.371 6.371 17 C 0.160 3.840 18 H 0.094 0.906 19 C 0.000 4.000 20 C -0.197 4.197 21 C -0.215 4.215 22 C -0.040 4.040 23 O -0.161 6.161 24 C 0.110 3.890 25 H 0.266 0.734 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.386 0.614 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.203 0.797 36 H 0.072 0.928 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.220 -19.280 3.533 21.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.144 3.856 10 N -0.381 5.381 11 C 0.400 3.600 12 O -0.472 6.472 13 N -0.383 5.383 14 C -0.048 4.048 15 C -0.029 4.029 16 O -0.290 6.290 17 C 0.101 3.899 18 H 0.112 0.888 19 C -0.051 4.051 20 C -0.216 4.216 21 C -0.234 4.234 22 C -0.108 4.108 23 O -0.056 6.056 24 C -0.014 4.014 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.221 0.779 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.220 0.780 36 H 0.090 0.910 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.505 -19.319 3.255 21.358 hybrid contribution 0.558 1.078 0.129 1.221 sum 9.063 -18.241 3.384 20.647 Atomic orbital electron populations 1.69987 1.06094 1.27212 1.48897 1.24944 0.94919 0.99423 0.94720 0.86355 0.79788 0.82946 0.77767 1.19650 1.20781 1.20797 1.21236 0.93247 0.90374 1.53187 0.91943 1.19026 0.87791 0.81030 0.97710 1.45881 1.10911 1.04285 1.77010 1.16023 0.84675 0.80978 0.78293 1.90876 1.14252 1.83730 1.58348 1.47317 1.05318 1.05680 1.79951 1.22301 0.81368 1.01719 0.99405 1.23065 1.00345 0.81796 0.97669 1.88030 1.20740 1.25689 1.94555 1.20875 0.83187 0.86283 0.99521 0.88848 1.21878 0.95977 0.89511 0.97721 1.21584 1.01742 0.94196 1.04093 1.21818 1.01735 0.96634 1.03181 1.24108 0.96861 0.88001 1.01826 1.84086 1.50347 1.15235 1.55960 1.21961 1.01164 0.81119 0.97194 0.92471 0.95568 0.95724 0.77947 0.90655 0.88760 0.87241 0.92061 0.83063 0.83267 0.78048 0.90998 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.06 5.43 -5.19 -0.03 7.03 16 10 N -0.73 -15.56 5.46 -66.41 -0.36 -15.92 16 11 C 0.70 14.64 8.31 -86.92 -0.72 13.91 16 12 O -0.59 -14.85 15.85 5.28 0.08 -14.76 16 13 N -0.64 -10.24 3.02 -178.00 -0.54 -10.78 16 14 C 0.08 0.92 6.63 -3.53 -0.02 0.89 16 15 C 0.05 0.51 6.98 37.31 0.26 0.77 16 16 O -0.37 -4.73 10.36 -39.96 -0.41 -5.14 16 17 C 0.16 2.03 3.23 -27.73 -0.09 1.94 16 18 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 19 C 0.00 0.00 6.22 -35.62 -0.22 -0.22 16 20 C -0.20 -2.18 10.81 -39.70 -0.43 -2.61 16 21 C -0.21 -2.05 10.91 -39.70 -0.43 -2.48 16 22 C -0.04 -0.37 12.09 29.42 0.36 -0.01 16 23 O -0.16 -2.00 10.63 0.97 0.01 -1.99 16 24 C 0.11 1.59 5.89 -3.53 -0.02 1.56 16 25 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.39 7.03 5.83 -40.82 -0.24 6.80 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.07 5.66 -51.93 -0.29 0.78 16 31 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.20 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.11 1.68 7.12 -51.93 -0.37 1.31 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -34.03 316.39 -7.17 -41.20 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -4.66 Total: 4.67 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -1.77 Total: 7.53 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.16 Total: -51.91 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.32 Total: -21.89 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.03 -7.17 -41.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335767423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.899 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds