Wall clock time and date at job start Tue Mar 31 2020 01:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00080 * 2 1 4 4 H 1.48496 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47052 * 299.99473 * 3 2 1 6 6 H 1.48496 * 109.47493 * 59.99251 * 3 2 1 7 7 C 1.37871 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00719 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00119 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47437 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00089 * 180.02562 * 10 9 7 12 12 O 1.21594 * 119.99619 * 5.08095 * 11 10 9 13 13 N 1.34771 * 120.00011 * 185.07925 * 11 10 9 14 14 C 1.47151 * 120.98440 * 355.03180 * 13 11 10 15 15 C 1.53302 * 108.38366 * 129.44215 * 14 13 11 16 16 O 1.43048 * 109.25284 * 52.30700 * 15 14 13 17 17 C 1.42962 * 114.10986 * 297.45954 * 16 15 14 18 18 H 1.09003 * 109.51400 * 302.59679 * 17 16 15 19 19 C 1.50705 * 109.51261 * 182.49959 * 17 16 15 20 20 C 1.34509 * 125.78768 * 144.81103 * 19 17 16 21 21 C 1.41387 * 106.84016 * 179.89054 * 20 19 17 22 22 C 1.34512 * 106.83855 * 0.37705 * 21 20 19 23 23 O 1.34302 * 125.78670 * 325.12396 * 19 17 16 24 24 C 1.47150 * 120.97907 * 175.01082 * 13 11 10 25 25 H 0.96997 * 119.99787 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46777 * 59.99893 * 9 7 2 27 27 H 1.08997 * 109.46766 * 300.00452 * 9 7 2 28 28 H 0.96997 * 119.99827 * 359.97438 * 10 9 7 29 29 H 1.08991 * 109.68432 * 249.16429 * 14 13 11 30 30 H 1.09004 * 109.67706 * 9.68573 * 14 13 11 31 31 H 1.09001 * 109.51011 * 172.23141 * 15 14 13 32 32 H 1.09002 * 109.51152 * 292.33027 * 15 14 13 33 33 H 1.08001 * 126.58433 * 0.02972 * 20 19 17 34 34 H 1.07997 * 126.58228 * 180.17136 * 21 20 19 35 35 H 1.08006 * 125.79297 * 179.79587 * 22 21 20 36 36 H 1.08999 * 109.68547 * 110.83545 * 24 13 11 37 37 H 1.08998 * 109.71932 * 350.29334 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2127 6 1 1.8904 2.3966 1.2123 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5623 -5.1068 -0.0937 13 7 2.6253 -5.9062 0.1033 14 6 4.0772 -5.6668 0.1088 15 6 4.6837 -6.4006 1.3104 16 8 4.2660 -7.7686 1.2876 17 6 2.8533 -7.9499 1.4109 18 1 2.5059 -7.4864 2.3343 19 6 2.5351 -9.4227 1.4364 20 6 1.5557 -10.0036 2.1523 21 6 1.6139 -11.3893 1.8774 22 6 2.6309 -11.5732 1.0163 23 8 3.1852 -10.3786 0.7527 24 6 2.1530 -7.2954 0.2145 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 3.1567 -3.4354 0.0002 29 1 4.5156 -6.0478 -0.8135 30 1 4.2726 -4.5978 0.1940 31 1 5.7713 -6.3514 1.2560 32 1 4.3437 -5.9309 2.2334 33 1 0.8571 -9.5067 2.8092 34 1 0.9683 -12.1538 2.2835 35 1 2.9477 -12.5208 0.6061 36 1 2.3976 -7.8405 -0.6972 37 1 1.0742 -7.3057 0.3700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335767423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:26 Heat of formation + Delta-G solvation = -67.592931 kcal Electronic energy + Delta-G solvation = -21670.838574 eV Core-core repulsion = 18221.718699 eV Total energy + Delta-G solvation = -3449.119875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.54337 -41.52934 -39.60510 -36.28057 -35.88814 -34.48269 -34.10073 -33.24945 -30.16178 -29.69843 -27.91307 -25.48099 -24.64908 -23.38095 -22.64285 -21.43031 -20.91775 -19.81036 -18.56557 -18.09617 -17.74985 -17.12077 -16.98691 -16.73650 -16.57056 -16.13121 -16.05646 -15.39618 -14.94994 -14.89489 -14.50973 -14.11742 -13.83333 -13.75316 -13.57636 -13.30673 -12.93322 -12.87025 -12.75515 -12.68760 -12.21202 -11.96225 -11.45667 -11.40959 -11.18182 -10.88160 -10.82303 -10.10999 -9.64603 -9.32384 -8.28534 -6.45127 0.66825 1.43362 1.45812 1.50975 1.59753 1.69293 2.03491 2.13167 2.38326 2.51788 3.05600 3.06817 3.56297 3.72136 3.79123 3.96137 4.09476 4.12336 4.20664 4.28275 4.41546 4.60232 4.71511 4.81439 4.86454 4.98311 5.03849 5.11822 5.25466 5.32341 5.46509 5.55173 5.61897 5.82429 5.89200 5.99653 6.21043 6.65992 7.07837 7.24784 7.59060 8.84059 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039358 B = 0.003346 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.255015 B = 8366.397600 C = 8826.631342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.284 3.716 10 N -0.719 5.719 11 C 0.696 3.304 12 O -0.642 6.642 13 N -0.633 5.633 14 C 0.069 3.931 15 C 0.050 3.950 16 O -0.379 6.379 17 C 0.171 3.829 18 H 0.095 0.905 19 C -0.029 4.029 20 C -0.201 4.201 21 C -0.226 4.226 22 C -0.033 4.033 23 O -0.180 6.180 24 C 0.111 3.889 25 H 0.269 0.731 26 H -0.015 1.015 27 H -0.012 1.012 28 H 0.404 0.596 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.062 0.938 33 H 0.159 0.841 34 H 0.174 0.826 35 H 0.242 0.758 36 H 0.077 0.923 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.983 -19.882 3.829 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.103 0.897 9 C 0.161 3.839 10 N -0.375 5.375 11 C 0.398 3.602 12 O -0.524 6.524 13 N -0.372 5.372 14 C -0.053 4.053 15 C -0.027 4.027 16 O -0.298 6.298 17 C 0.112 3.888 18 H 0.112 0.888 19 C -0.079 4.079 20 C -0.221 4.221 21 C -0.245 4.245 22 C -0.100 4.100 23 O -0.076 6.076 24 C -0.013 4.013 25 H 0.078 0.922 26 H 0.003 0.997 27 H 0.006 0.994 28 H 0.242 0.758 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.163 0.837 32 H 0.081 0.919 33 H 0.176 0.824 34 H 0.191 0.809 35 H 0.258 0.742 36 H 0.095 0.905 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.352 -19.973 3.560 23.248 hybrid contribution -0.317 1.108 0.029 1.153 sum 11.036 -18.864 3.589 22.148 Atomic orbital electron populations 1.70149 1.08299 1.28531 1.49952 1.26062 0.95773 1.03873 0.93856 0.85092 0.79147 0.77223 0.77622 1.17457 1.20591 1.20466 1.21602 0.94314 0.90295 1.52876 0.89721 1.18459 0.88092 0.83247 0.94064 1.45449 1.11032 1.03573 1.77446 1.16158 0.84594 0.81570 0.77886 1.90837 1.16775 1.84541 1.60291 1.47282 1.06610 1.05022 1.78252 1.22653 0.78548 1.02787 1.01288 1.23257 1.02175 0.80555 0.96680 1.88036 1.20381 1.26934 1.94432 1.20664 0.83120 0.86765 0.98234 0.88787 1.21839 0.97236 0.89490 0.99384 1.21903 1.01197 0.95327 1.03623 1.22177 1.02441 0.96365 1.03508 1.24955 0.96026 0.88215 1.00839 1.84063 1.51021 1.16173 1.56385 1.22039 1.00414 0.80237 0.98631 0.92230 0.99693 0.99433 0.75827 0.88945 0.87917 0.83700 0.91946 0.82358 0.80864 0.74218 0.90490 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.99 41.81 29.54 68.60 2.03 43.83 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -29.83 9.28 25.60 0.24 -29.59 16 8 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.28 15.76 5.43 85.64 0.47 16.23 16 10 N -0.72 -31.29 5.46 -482.29 -2.64 -33.92 16 11 C 0.70 29.99 8.31 179.06 1.49 31.47 16 12 O -0.64 -33.84 15.85 -4.01 -0.06 -33.91 16 13 N -0.63 -20.09 3.02 -835.35 -2.52 -22.61 16 14 C 0.07 1.53 6.63 86.36 0.57 2.11 16 15 C 0.05 0.92 6.98 72.08 0.50 1.42 16 16 O -0.38 -8.98 10.36 -144.46 -1.50 -10.48 16 17 C 0.17 4.26 3.23 29.95 0.10 4.36 16 18 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 19 C -0.03 -0.70 6.22 24.83 0.15 -0.55 16 20 C -0.20 -4.32 10.81 22.19 0.24 -4.09 16 21 C -0.23 -3.89 10.91 22.19 0.24 -3.65 16 22 C -0.03 -0.54 12.09 66.97 0.81 0.27 16 23 O -0.18 -4.25 10.63 1.99 0.02 -4.23 16 24 C 0.11 3.23 5.89 86.36 0.51 3.74 16 25 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 26 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 28 H 0.40 14.35 5.83 -92.71 -0.54 13.81 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 2.09 5.66 -2.39 -0.01 2.07 16 31 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 34 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 35 H 0.24 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.09 2.88 7.12 -2.39 -0.02 2.87 16 Total: -1.00 -76.61 316.39 1.95 -74.66 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.55 Total: 19.95 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 5.78 Total: 22.40 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -4.87 Total: -112.23 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -1.54 Total: -48.61 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -76.61 1.95 -74.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335767423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.067 kcal (2) G-P(sol) polarization free energy of solvation -76.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds