Wall clock time and date at job start Tue Mar 31 2020 01:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00225 * 2 1 4 4 H 1.48499 * 109.47184 * 270.00162 * 3 2 1 5 5 H 1.48501 * 109.47082 * 30.00129 * 3 2 1 6 6 H 1.48502 * 109.47480 * 149.99767 * 3 2 1 7 7 C 1.37879 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99766 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46975 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99710 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00461 * 4.97571 * 11 10 9 13 13 N 1.34782 * 119.99426 * 184.97875 * 11 10 9 14 14 C 1.46919 * 120.63297 * 354.48490 * 13 11 10 15 15 C 1.53196 * 108.77637 * 233.88458 * 14 13 11 16 16 C 1.53040 * 109.30980 * 305.36572 * 15 14 13 17 17 C 1.53000 * 109.44731 * 181.37860 * 16 15 14 18 18 F 1.39891 * 109.47279 * 299.93869 * 17 16 15 19 19 F 1.39905 * 109.47188 * 59.94183 * 17 16 15 20 20 F 1.39907 * 109.46924 * 179.97438 * 17 16 15 21 21 C 1.53040 * 109.54096 * 61.36324 * 16 15 14 22 22 C 1.46934 * 120.62815 * 174.76304 * 13 11 10 23 23 H 0.96996 * 119.99985 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47391 * 60.00382 * 9 7 2 25 25 H 1.08997 * 109.47587 * 299.99745 * 9 7 2 26 26 H 0.97000 * 120.00143 * 359.97438 * 10 9 7 27 27 H 1.08996 * 109.58776 * 353.66660 * 14 13 11 28 28 H 1.08999 * 109.58790 * 114.09669 * 14 13 11 29 29 H 1.08996 * 109.49663 * 185.41666 * 15 14 13 30 30 H 1.08996 * 109.49419 * 65.31371 * 15 14 13 31 31 H 1.09005 * 109.45912 * 301.33954 * 16 15 14 32 32 H 1.09004 * 109.49633 * 178.68477 * 21 16 15 33 33 H 1.09000 * 109.49489 * 58.58830 * 21 16 15 34 34 H 1.08995 * 109.58666 * 245.90732 * 22 13 11 35 35 H 1.09004 * 109.58197 * 6.19022 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6128 0.0018 11 6 1.7537 -4.8834 0.0015 12 8 0.5622 -5.1069 -0.0911 13 7 2.6253 -5.9063 0.1039 14 6 4.0736 -5.6595 0.0953 15 6 4.7145 -6.5230 -0.9958 16 6 4.3276 -7.9871 -0.7749 17 6 4.9940 -8.8567 -1.8429 18 9 4.5659 -8.4484 -3.1106 19 9 6.3837 -8.7216 -1.7540 20 9 4.6411 -10.1955 -1.6410 21 6 2.8075 -8.1352 -0.8723 22 6 2.1451 -7.2901 0.2202 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5568 0.8903 26 1 3.1567 -3.4356 0.0021 27 1 4.2636 -4.6067 -0.1133 28 1 4.4951 -5.9239 1.0651 29 1 5.7988 -6.4222 -0.9495 30 1 4.3596 -6.1964 -1.9733 31 1 4.6610 -8.3057 0.2127 32 1 2.5347 -9.1820 -0.7381 33 1 2.4707 -7.7936 -1.8511 34 1 2.4093 -7.6874 1.2002 35 1 1.0624 -7.3127 0.0965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336329617.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:36 Heat of formation + Delta-G solvation = -191.710432 kcal Electronic energy + Delta-G solvation = -22442.533824 eV Core-core repulsion = 18446.175070 eV Total energy + Delta-G solvation = -3996.358754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.32340 -47.81765 -47.77094 -39.99640 -37.49401 -34.30772 -33.41077 -32.30888 -31.15401 -27.86731 -26.65624 -23.74097 -23.63728 -22.36253 -20.97349 -19.35923 -18.55655 -18.49657 -18.36299 -17.40606 -16.01687 -15.80199 -15.23594 -14.98142 -14.83585 -14.65059 -14.27232 -14.13988 -14.05685 -13.95162 -13.92197 -13.51201 -13.34517 -13.27204 -12.92457 -12.46311 -11.95978 -11.85023 -11.51225 -11.43124 -11.05697 -10.96849 -10.90284 -10.88432 -10.29628 -9.43385 -9.37218 -8.75257 -8.52418 -7.78177 -6.16514 -4.23333 2.51910 3.07770 3.24085 3.30535 3.32758 3.51865 3.72379 3.78251 3.86018 4.29268 4.39477 4.49366 4.68006 4.78373 4.87506 5.07345 5.16976 5.19709 5.34090 5.39064 5.48182 5.59535 5.76958 5.87570 5.99042 6.66869 7.06369 7.47519 7.50370 7.55447 7.81820 8.00035 8.72749 8.86251 9.27408 9.45198 10.93737 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.031497 B = 0.003654 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.755749 B = 7661.096787 C = 8185.774211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.728 5.728 11 C 0.698 3.302 12 O -0.596 6.596 13 N -0.641 5.641 14 C 0.118 3.882 15 C -0.136 4.136 16 C -0.129 4.129 17 C 0.453 3.547 18 F -0.181 7.181 19 F -0.185 7.185 20 F -0.185 7.185 21 C -0.135 4.135 22 C 0.136 3.864 23 H 0.266 0.734 24 H 0.026 0.974 25 H 0.024 0.976 26 H 0.385 0.615 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.263 -17.467 -0.852 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.399 3.601 12 O -0.475 6.475 13 N -0.381 5.381 14 C -0.006 4.006 15 C -0.174 4.174 16 C -0.149 4.149 17 C 0.399 3.601 18 F -0.162 7.162 19 F -0.167 7.167 20 F -0.167 7.167 21 C -0.173 4.173 22 C 0.012 3.988 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.220 0.780 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.184 -17.448 -0.920 20.745 hybrid contribution 1.154 0.781 -0.260 1.417 sum 12.338 -16.667 -1.179 20.770 Atomic orbital electron populations 1.69977 1.06099 1.27298 1.48859 1.24939 0.94903 0.99390 0.94723 0.86415 0.79597 0.82665 0.78217 1.20467 1.21005 1.19769 1.21206 0.93209 0.90433 1.53248 0.92013 1.19004 0.87804 0.81076 0.97650 1.45898 1.10855 1.04423 1.77052 1.16050 0.84788 0.81076 0.78183 1.90864 1.14386 1.83780 1.58454 1.47346 1.05115 1.06065 1.79591 1.21481 0.80947 1.00191 0.97954 1.22045 1.01805 0.91876 1.01677 1.22489 0.98324 0.96273 0.97817 1.20683 0.76849 0.79437 0.83125 1.93184 1.89577 1.90174 1.43313 1.93174 1.31522 1.95678 1.96287 1.93173 1.91732 1.36787 1.94971 1.22059 0.91323 1.01706 1.02241 1.21261 1.01084 0.79778 0.96655 0.92438 0.95633 0.95769 0.77966 0.89190 0.91180 0.89458 0.89854 0.86627 0.89603 0.89961 0.91768 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.27 7.05 5.43 -5.19 -0.03 7.02 16 10 N -0.73 -15.39 5.46 -66.41 -0.36 -15.75 16 11 C 0.70 14.16 8.29 -86.92 -0.72 13.44 16 12 O -0.60 -14.62 15.77 5.29 0.08 -14.53 16 13 N -0.64 -9.29 2.97 -178.50 -0.53 -9.82 16 14 C 0.12 1.26 6.39 -3.71 -0.02 1.23 16 15 C -0.14 -1.22 5.11 -26.61 -0.14 -1.35 16 16 C -0.13 -1.09 2.13 -90.58 -0.19 -1.28 16 17 C 0.45 4.29 2.69 37.16 0.10 4.39 16 18 F -0.18 -2.00 16.33 2.25 0.04 -1.96 16 19 F -0.19 -1.81 16.77 2.25 0.04 -1.77 16 20 F -0.19 -1.82 16.77 2.25 0.04 -1.78 16 21 C -0.13 -1.28 5.11 -26.61 -0.14 -1.42 16 22 C 0.14 1.61 6.44 -3.71 -0.02 1.59 16 23 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.39 6.94 5.81 -40.82 -0.24 6.70 16 27 H 0.09 0.99 5.65 -51.93 -0.29 0.69 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.64 7.76 -51.93 -0.40 0.23 16 30 H 0.08 0.87 7.84 -51.93 -0.41 0.46 16 31 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.68 7.77 -51.93 -0.40 0.27 16 33 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.43 6.99 -51.93 -0.36 1.06 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -32.33 300.84 -6.19 -38.51 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.16 Total: 1.80 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -1.58 Total: 10.37 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.16 Total: -50.80 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.53 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.11 Total: -5.52 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.33 -6.19 -38.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336329617.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.197 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds