Wall clock time and date at job start Tue Mar 31 2020 01:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00225 * 2 1 4 4 H 1.48499 * 109.47184 * 270.00162 * 3 2 1 5 5 H 1.48501 * 109.47082 * 30.00129 * 3 2 1 6 6 H 1.48502 * 109.47480 * 149.99767 * 3 2 1 7 7 C 1.37879 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99766 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46975 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99710 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00461 * 4.97571 * 11 10 9 13 13 N 1.34782 * 119.99426 * 184.97875 * 11 10 9 14 14 C 1.46919 * 120.63297 * 354.48490 * 13 11 10 15 15 C 1.53196 * 108.77637 * 233.88458 * 14 13 11 16 16 C 1.53040 * 109.30980 * 305.36572 * 15 14 13 17 17 C 1.53000 * 109.44731 * 181.37860 * 16 15 14 18 18 F 1.39891 * 109.47279 * 299.93869 * 17 16 15 19 19 F 1.39905 * 109.47188 * 59.94183 * 17 16 15 20 20 F 1.39907 * 109.46924 * 179.97438 * 17 16 15 21 21 C 1.53040 * 109.54096 * 61.36324 * 16 15 14 22 22 C 1.46934 * 120.62815 * 174.76304 * 13 11 10 23 23 H 0.96996 * 119.99985 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47391 * 60.00382 * 9 7 2 25 25 H 1.08997 * 109.47587 * 299.99745 * 9 7 2 26 26 H 0.97000 * 120.00143 * 359.97438 * 10 9 7 27 27 H 1.08996 * 109.58776 * 353.66660 * 14 13 11 28 28 H 1.08999 * 109.58790 * 114.09669 * 14 13 11 29 29 H 1.08996 * 109.49663 * 185.41666 * 15 14 13 30 30 H 1.08996 * 109.49419 * 65.31371 * 15 14 13 31 31 H 1.09005 * 109.45912 * 301.33954 * 16 15 14 32 32 H 1.09004 * 109.49633 * 178.68477 * 21 16 15 33 33 H 1.09000 * 109.49489 * 58.58830 * 21 16 15 34 34 H 1.08995 * 109.58666 * 245.90732 * 22 13 11 35 35 H 1.09004 * 109.58197 * 6.19022 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6128 0.0018 11 6 1.7537 -4.8834 0.0015 12 8 0.5622 -5.1069 -0.0911 13 7 2.6253 -5.9063 0.1039 14 6 4.0736 -5.6595 0.0953 15 6 4.7145 -6.5230 -0.9958 16 6 4.3276 -7.9871 -0.7749 17 6 4.9940 -8.8567 -1.8429 18 9 4.5659 -8.4484 -3.1106 19 9 6.3837 -8.7216 -1.7540 20 9 4.6411 -10.1955 -1.6410 21 6 2.8075 -8.1352 -0.8723 22 6 2.1451 -7.2901 0.2202 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5568 0.8903 26 1 3.1567 -3.4356 0.0021 27 1 4.2636 -4.6067 -0.1133 28 1 4.4951 -5.9239 1.0651 29 1 5.7988 -6.4222 -0.9495 30 1 4.3596 -6.1964 -1.9733 31 1 4.6610 -8.3057 0.2127 32 1 2.5347 -9.1820 -0.7381 33 1 2.4707 -7.7936 -1.8511 34 1 2.4093 -7.6874 1.2002 35 1 1.0624 -7.3127 0.0965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336329617.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:35 Heat of formation + Delta-G solvation = -213.475996 kcal Electronic energy + Delta-G solvation = -22443.477650 eV Core-core repulsion = 18446.175070 eV Total energy + Delta-G solvation = -3997.302580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.08373 -48.56268 -48.55967 -41.35343 -38.72793 -36.20658 -34.76650 -34.01814 -32.13836 -29.47521 -28.00616 -25.12574 -24.54467 -23.88907 -22.02796 -20.78223 -19.77782 -19.25976 -19.22536 -18.43893 -17.87788 -17.28899 -16.63792 -16.44978 -15.79126 -15.63483 -15.28483 -15.09584 -14.97516 -14.87150 -14.73544 -14.72586 -14.55828 -14.51070 -13.98900 -13.95612 -13.71360 -13.34392 -12.86937 -12.70207 -12.35053 -12.25710 -12.17416 -11.88844 -11.76362 -11.45706 -11.11823 -10.79123 -10.05429 -9.41506 -8.27115 -6.43700 1.44822 1.47580 1.58358 1.73764 1.81734 2.21345 2.39935 2.81352 2.97458 3.06936 3.08122 3.18214 3.68665 3.74832 4.00146 4.06847 4.26848 4.30329 4.52337 4.63637 4.67960 4.80351 4.86665 4.99072 5.10064 5.18830 5.28426 5.48738 5.58615 5.72973 5.86128 6.10281 6.67954 7.18491 7.26730 7.70338 8.85317 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.031497 B = 0.003654 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.755749 B = 7661.096787 C = 8185.774211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.692 3.308 12 O -0.648 6.648 13 N -0.631 5.631 14 C 0.112 3.888 15 C -0.130 4.130 16 C -0.123 4.123 17 C 0.455 3.545 18 F -0.194 7.194 19 F -0.185 7.185 20 F -0.186 7.186 21 C -0.127 4.127 22 C 0.131 3.869 23 H 0.269 0.731 24 H -0.017 1.017 25 H -0.014 1.014 26 H 0.403 0.597 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.148 0.852 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.421 -17.894 -0.136 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.379 5.379 11 C 0.394 3.606 12 O -0.530 6.530 13 N -0.369 5.369 14 C -0.010 4.010 15 C -0.169 4.169 16 C -0.142 4.142 17 C 0.401 3.599 18 F -0.175 7.175 19 F -0.166 7.166 20 F -0.168 7.168 21 C -0.165 4.165 22 C 0.009 3.991 23 H 0.077 0.923 24 H 0.001 0.999 25 H 0.004 0.996 26 H 0.241 0.759 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.165 0.835 32 H 0.126 0.874 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.430 -17.940 -0.204 23.024 hybrid contribution 0.172 0.785 -0.491 0.942 sum 14.602 -17.155 -0.695 22.539 Atomic orbital electron populations 1.70145 1.08313 1.28559 1.49965 1.26057 0.95748 1.03849 0.93843 0.85148 0.78544 0.76916 0.78543 1.19728 1.21010 1.17731 1.21587 0.94282 0.90429 1.52910 0.89812 1.18409 0.88137 0.83432 0.93866 1.45476 1.10879 1.03883 1.77694 1.16258 0.84826 0.81734 0.77816 1.90825 1.17072 1.84622 1.60526 1.47378 1.06263 1.05602 1.77640 1.21817 0.78230 1.00578 1.00408 1.22003 1.03123 0.91801 0.99947 1.22499 0.97005 0.95683 0.98990 1.20780 0.76861 0.79465 0.82783 1.93167 1.89723 1.90298 1.44345 1.93177 1.31517 1.95673 1.96242 1.93174 1.91741 1.36951 1.94917 1.21959 0.92225 1.02258 1.00096 1.21485 0.99822 0.78559 0.99275 0.92256 0.99909 0.99614 0.75913 0.89630 0.87775 0.86826 0.91736 0.83464 0.87413 0.92122 0.88433 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.99 41.92 29.54 68.60 2.03 43.95 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.55 -30.04 9.28 25.60 0.24 -29.81 16 8 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 9 C 0.28 15.84 5.43 85.63 0.47 16.30 16 10 N -0.72 -31.19 5.46 -482.28 -2.63 -33.83 16 11 C 0.69 28.81 8.29 179.05 1.49 30.29 16 12 O -0.65 -33.50 15.77 -3.97 -0.06 -33.57 16 13 N -0.63 -17.61 2.97 -836.91 -2.49 -20.09 16 14 C 0.11 2.05 6.39 86.37 0.55 2.60 16 15 C -0.13 -1.95 5.11 30.67 0.16 -1.79 16 16 C -0.12 -1.65 2.13 -10.77 -0.02 -1.67 16 17 C 0.46 7.41 2.69 71.98 0.19 7.60 16 18 F -0.19 -4.00 16.33 44.97 0.73 -3.27 16 19 F -0.18 -3.05 16.77 44.97 0.75 -2.29 16 20 F -0.19 -3.17 16.77 44.97 0.75 -2.42 16 21 C -0.13 -2.17 5.11 30.67 0.16 -2.01 16 22 C 0.13 2.92 6.44 86.36 0.56 3.48 16 23 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 24 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 25 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 26 H 0.40 14.24 5.81 -92.71 -0.54 13.70 16 27 H 0.09 1.67 5.65 -2.39 -0.01 1.65 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.11 1.18 7.76 -2.39 -0.02 1.16 16 30 H 0.06 1.24 7.84 -2.39 -0.02 1.22 16 31 H 0.15 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.11 1.41 7.77 -2.39 -0.02 1.39 16 33 H 0.06 1.32 7.84 -2.39 -0.02 1.30 16 34 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 2.09 6.99 -2.39 -0.02 2.08 16 Total: -1.00 -74.09 300.84 4.20 -69.89 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.59 Total: 11.84 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 4.24 Total: 25.72 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.83 Total: -109.86 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.06 Total: -33.57 kcal Atomic # 9 Polarization: -10.22 SS G_CDS: 2.24 Total: -7.98 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -74.09 4.20 -69.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336329617.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.583 kcal (2) G-P(sol) polarization free energy of solvation -74.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds