Wall clock time and date at job start Tue Mar 31 2020 01:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48507 * 109.47092 * 269.99691 * 3 2 1 5 5 H 1.48503 * 109.47212 * 29.99723 * 3 2 1 6 6 H 1.48496 * 109.47159 * 150.00011 * 3 2 1 7 7 C 1.37882 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00014 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99767 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46956 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47143 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47101 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99907 * 179.97438 * 12 11 10 14 14 O 1.21349 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.49451 * 120.00062 * 179.97438 * 13 12 11 16 16 O 1.21357 * 119.99611 * 0.02562 * 15 13 12 17 17 N 1.34775 * 120.00083 * 180.02562 * 15 13 12 18 18 C 1.46503 * 119.99928 * 180.02562 * 17 15 13 19 19 C 1.50701 * 109.46916 * 179.97438 * 18 17 15 20 20 C 1.41381 * 126.57424 * 90.00122 * 19 18 17 21 21 C 1.34520 * 106.83580 * 179.72986 * 20 19 18 22 22 O 1.34302 * 108.42210 * 0.26485 * 21 20 19 23 23 C 1.34302 * 109.47622 * 359.97438 * 22 21 20 24 24 H 0.97003 * 120.00259 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47385 * 60.00134 * 9 7 2 26 26 H 1.08999 * 109.47054 * 299.99550 * 9 7 2 27 27 H 1.09007 * 109.47167 * 59.99700 * 10 9 7 28 28 H 1.09004 * 109.47199 * 299.99752 * 10 9 7 29 29 H 1.08996 * 109.47577 * 60.00110 * 11 10 9 30 30 H 1.08999 * 109.47101 * 299.99558 * 11 10 9 31 31 H 0.96996 * 119.99724 * 0.02562 * 12 11 10 32 32 H 0.96992 * 120.00059 * 359.97438 * 17 15 13 33 33 H 1.09007 * 109.47170 * 59.99754 * 18 17 15 34 34 H 1.08999 * 109.46799 * 299.99624 * 18 17 15 35 35 H 1.08002 * 126.58570 * 359.97438 * 20 19 18 36 36 H 1.08004 * 125.78733 * 180.22473 * 21 20 19 37 37 H 1.07999 * 125.79201 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5514 -2.6366 0.0009 12 7 6.0397 -4.0179 0.0014 13 6 7.3648 -4.2642 0.0010 14 8 8.1534 -3.3418 0.0006 15 6 7.8630 -5.6732 0.0020 16 8 7.0743 -6.5956 0.0029 17 7 9.1881 -5.9195 0.0021 18 6 9.6764 -7.3007 0.0026 19 6 11.1834 -7.3007 0.0019 20 6 12.0263 -7.3001 1.1369 21 6 13.2923 -7.3064 0.6821 22 8 13.2608 -7.3048 -0.6606 23 6 11.9845 -7.2982 -1.0786 24 1 -0.4851 0.8400 -0.0004 25 1 3.8745 -0.6801 0.8910 26 1 3.8751 -0.6805 -0.8889 27 1 3.6584 -3.1503 -0.8893 28 1 3.6578 -3.1506 0.8908 29 1 5.9149 -2.1229 0.8909 30 1 5.9147 -2.1228 -0.8890 31 1 5.4094 -4.7551 0.0014 32 1 9.8184 -5.1823 0.0010 33 1 9.3129 -7.8149 -0.8872 34 1 9.3131 -7.8141 0.8928 35 1 11.7139 -7.2992 2.1708 36 1 14.1829 -7.3112 1.2930 37 1 11.6570 -7.2951 -2.1077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339296807.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:04 Heat of formation + Delta-G solvation = -65.468590 kcal Electronic energy + Delta-G solvation = -20192.886925 eV Core-core repulsion = 16743.859168 eV Total energy + Delta-G solvation = -3449.027757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.07160 -40.63775 -38.61104 -36.14959 -35.52082 -33.44364 -33.05535 -31.48496 -30.34038 -27.95795 -26.99631 -24.25783 -22.33038 -22.10105 -21.03122 -20.78439 -20.10469 -18.73325 -17.70193 -17.00954 -16.72708 -16.38438 -16.17278 -15.53819 -15.34641 -15.11843 -14.87339 -14.21096 -14.16896 -13.70132 -13.42809 -13.27410 -12.77371 -12.72560 -12.33300 -12.08147 -11.97543 -11.79278 -11.12072 -10.92473 -10.43745 -10.16614 -9.98200 -9.79067 -9.55582 -9.53999 -9.24544 -9.08431 -9.07643 -8.56645 -6.06974 -4.05958 1.21141 1.35716 1.86182 2.51804 2.65441 3.16169 3.30178 3.37879 3.41382 3.68978 4.20552 4.30820 4.43181 4.44810 4.53139 5.00785 5.13646 5.21202 5.26675 5.43336 5.52718 5.56269 5.64672 5.88143 5.92592 5.94859 6.15300 6.38359 6.53217 6.58602 6.73430 6.85625 7.19602 7.32988 7.33099 7.65463 7.74345 7.97666 8.49377 8.97118 9.54788 11.06203 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.047418 B = 0.002323 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.354125 B =12050.279073 C =12433.738662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.115 4.115 11 C 0.111 3.889 12 N -0.691 5.691 13 C 0.501 3.499 14 O -0.527 6.527 15 C 0.508 3.492 16 O -0.519 6.519 17 N -0.700 5.700 18 C 0.190 3.810 19 C -0.207 4.207 20 C -0.199 4.199 21 C -0.041 4.041 22 O -0.175 6.175 23 C -0.011 4.011 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.413 0.587 32 H 0.414 0.586 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.151 0.849 36 H 0.205 0.795 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.464 -15.912 0.176 30.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.011 4.011 12 N -0.343 5.343 13 C 0.281 3.719 14 O -0.404 6.404 15 C 0.289 3.711 16 O -0.395 6.395 17 N -0.355 5.355 18 C 0.067 3.933 19 C -0.209 4.209 20 C -0.218 4.218 21 C -0.108 4.108 22 O -0.069 6.069 23 C -0.080 4.080 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.249 0.751 32 H 0.251 0.749 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.169 0.831 36 H 0.221 0.779 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 26.530 -15.796 0.001 30.877 hybrid contribution 0.181 0.901 0.188 0.938 sum 26.712 -14.895 0.189 30.585 Atomic orbital electron populations 1.69912 1.06312 1.26962 1.50895 1.25038 0.94766 0.99247 0.94485 0.86768 0.80376 0.83526 0.78563 1.20253 1.21369 1.18911 1.21090 0.89249 0.94570 1.51157 0.90931 1.19503 0.97373 0.91259 0.96710 1.21744 0.90117 1.01268 1.02194 1.21851 0.96674 0.80085 1.02479 1.46017 1.06068 1.11110 1.71096 1.20002 0.83968 0.88975 0.78951 1.90760 1.55276 1.45483 1.48865 1.20328 0.83154 0.89943 0.77682 1.90777 1.55189 1.45724 1.47786 1.45868 1.06680 1.09522 1.73417 1.19601 0.87435 0.82606 1.03618 1.20409 0.95980 1.11130 0.93406 1.21800 0.92455 1.07433 1.00099 1.24093 0.99846 1.06198 0.80650 1.84114 1.29076 1.70750 1.22999 1.24059 0.80267 1.03696 0.99960 0.92681 0.96236 0.96678 0.91804 0.91776 0.91107 0.91101 0.75118 0.74949 0.89999 0.89865 0.83103 0.77879 0.77745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.12 -2.12 5.27 -26.73 -0.14 -2.26 16 11 C 0.11 1.78 5.67 -4.04 -0.02 1.75 16 12 N -0.69 -9.82 5.55 -60.73 -0.34 -10.15 16 13 C 0.50 7.13 7.89 -11.58 -0.09 7.04 16 14 O -0.53 -8.55 16.48 5.50 0.09 -8.46 16 15 C 0.51 6.35 7.89 -11.59 -0.09 6.26 16 16 O -0.52 -7.45 16.48 5.49 0.09 -7.36 16 17 N -0.70 -6.80 5.54 -61.90 -0.34 -7.14 16 18 C 0.19 1.50 6.19 -5.19 -0.03 1.47 16 19 C -0.21 -1.47 5.53 -104.74 -0.58 -2.05 16 20 C -0.20 -1.31 10.87 -39.70 -0.43 -1.74 16 21 C -0.04 -0.23 12.09 29.42 0.36 0.12 16 22 O -0.17 -1.24 10.65 5.71 0.06 -1.18 16 23 C -0.01 -0.07 12.01 29.42 0.35 0.29 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 26 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 27 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.41 5.38 7.94 -40.82 -0.32 5.05 16 32 H 0.41 3.82 7.94 -40.82 -0.32 3.49 16 33 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.20 0.46 8.06 -52.48 -0.42 0.04 16 37 H 0.21 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 329.43 15.07 4.96 4.96 Total: -1.00 -33.63 329.43 -5.40 -39.02 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.81 Total: 2.95 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.22 Total: -2.64 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.09 Total: -44.18 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.24 Total: -17.00 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.63 -5.40 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339296807.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.444 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds