Wall clock time and date at job start Tue Mar 31 2020 01:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48507 * 109.47092 * 269.99691 * 3 2 1 5 5 H 1.48503 * 109.47212 * 29.99723 * 3 2 1 6 6 H 1.48496 * 109.47159 * 150.00011 * 3 2 1 7 7 C 1.37882 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00014 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99767 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46956 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47143 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47101 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99907 * 179.97438 * 12 11 10 14 14 O 1.21349 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.49451 * 120.00062 * 179.97438 * 13 12 11 16 16 O 1.21357 * 119.99611 * 0.02562 * 15 13 12 17 17 N 1.34775 * 120.00083 * 180.02562 * 15 13 12 18 18 C 1.46503 * 119.99928 * 180.02562 * 17 15 13 19 19 C 1.50701 * 109.46916 * 179.97438 * 18 17 15 20 20 C 1.41381 * 126.57424 * 90.00122 * 19 18 17 21 21 C 1.34520 * 106.83580 * 179.72986 * 20 19 18 22 22 O 1.34302 * 108.42210 * 0.26485 * 21 20 19 23 23 C 1.34302 * 109.47622 * 359.97438 * 22 21 20 24 24 H 0.97003 * 120.00259 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47385 * 60.00134 * 9 7 2 26 26 H 1.08999 * 109.47054 * 299.99550 * 9 7 2 27 27 H 1.09007 * 109.47167 * 59.99700 * 10 9 7 28 28 H 1.09004 * 109.47199 * 299.99752 * 10 9 7 29 29 H 1.08996 * 109.47577 * 60.00110 * 11 10 9 30 30 H 1.08999 * 109.47101 * 299.99558 * 11 10 9 31 31 H 0.96996 * 119.99724 * 0.02562 * 12 11 10 32 32 H 0.96992 * 120.00059 * 359.97438 * 17 15 13 33 33 H 1.09007 * 109.47170 * 59.99754 * 18 17 15 34 34 H 1.08999 * 109.46799 * 299.99624 * 18 17 15 35 35 H 1.08002 * 126.58570 * 359.97438 * 20 19 18 36 36 H 1.08004 * 125.78733 * 180.22473 * 21 20 19 37 37 H 1.07999 * 125.79201 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5514 -2.6366 0.0009 12 7 6.0397 -4.0179 0.0014 13 6 7.3648 -4.2642 0.0010 14 8 8.1534 -3.3418 0.0006 15 6 7.8630 -5.6732 0.0020 16 8 7.0743 -6.5956 0.0029 17 7 9.1881 -5.9195 0.0021 18 6 9.6764 -7.3007 0.0026 19 6 11.1834 -7.3007 0.0019 20 6 12.0263 -7.3001 1.1369 21 6 13.2923 -7.3064 0.6821 22 8 13.2608 -7.3048 -0.6606 23 6 11.9845 -7.2982 -1.0786 24 1 -0.4851 0.8400 -0.0004 25 1 3.8745 -0.6801 0.8910 26 1 3.8751 -0.6805 -0.8889 27 1 3.6584 -3.1503 -0.8893 28 1 3.6578 -3.1506 0.8908 29 1 5.9149 -2.1229 0.8909 30 1 5.9147 -2.1228 -0.8890 31 1 5.4094 -4.7551 0.0014 32 1 9.8184 -5.1823 0.0010 33 1 9.3129 -7.8149 -0.8872 34 1 9.3131 -7.8141 0.8928 35 1 11.7139 -7.2992 2.1708 36 1 14.1829 -7.3112 1.2930 37 1 11.6570 -7.2951 -2.1077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339296807.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:04 Heat of formation + Delta-G solvation = -90.997356 kcal Electronic energy + Delta-G solvation = -20193.993935 eV Core-core repulsion = 16743.859168 eV Total energy + Delta-G solvation = -3450.134767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.53880 -41.69631 -39.69360 -37.28758 -36.57116 -35.17177 -33.78973 -33.27957 -30.84825 -29.41233 -27.96793 -25.59718 -23.71601 -22.54522 -22.28025 -21.62034 -21.23045 -19.72635 -18.90415 -18.25960 -17.99005 -17.24868 -16.99109 -16.61399 -16.28748 -16.27420 -15.99650 -15.48017 -15.26467 -14.82986 -14.77122 -14.36698 -13.81490 -13.71361 -13.62469 -13.33562 -12.92743 -12.89036 -12.73470 -12.69282 -11.90640 -11.77975 -11.60132 -11.33116 -11.04475 -10.75067 -10.61562 -10.39367 -10.27059 -9.54805 -8.27970 -6.32371 0.29847 0.71684 1.20502 1.38846 1.40492 1.52297 1.71356 2.09812 2.25332 2.37886 2.72740 3.07682 3.42442 3.68717 3.86617 4.02414 4.09123 4.17925 4.48359 4.52047 4.59364 4.69778 4.81732 4.86865 5.02357 5.05727 5.06784 5.18170 5.23320 5.46876 5.48456 5.55949 5.65481 5.88571 6.13365 6.28502 6.30949 6.67478 6.76034 6.89488 7.32252 8.88522 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.047418 B = 0.002323 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.354125 B =12050.279073 C =12433.738662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.034 0.966 9 C -0.011 4.011 10 C -0.105 4.105 11 C 0.124 3.876 12 N -0.688 5.688 13 C 0.503 3.497 14 O -0.547 6.547 15 C 0.514 3.486 16 O -0.541 6.541 17 N -0.685 5.685 18 C 0.192 3.808 19 C -0.222 4.222 20 C -0.217 4.217 21 C -0.039 4.039 22 O -0.187 6.187 23 C -0.011 4.011 24 H 0.266 0.734 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.419 0.581 32 H 0.418 0.582 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.158 0.842 36 H 0.234 0.766 37 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.127 -15.722 0.085 33.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.570 4.570 8 H 0.053 0.947 9 C -0.049 4.049 10 C -0.143 4.143 11 C 0.001 3.999 12 N -0.340 5.340 13 C 0.284 3.716 14 O -0.425 6.425 15 C 0.294 3.706 16 O -0.418 6.418 17 N -0.338 5.338 18 C 0.070 3.930 19 C -0.224 4.224 20 C -0.237 4.237 21 C -0.106 4.106 22 O -0.082 6.082 23 C -0.080 4.080 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.256 0.744 32 H 0.255 0.745 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.175 0.825 36 H 0.250 0.750 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 29.234 -15.637 -0.089 33.153 hybrid contribution -0.646 0.739 0.224 1.007 sum 28.588 -14.898 0.136 32.237 Atomic orbital electron populations 1.70070 1.08336 1.28143 1.52681 1.26046 0.95643 1.03650 0.94209 0.85646 0.79577 0.78152 0.79207 1.19198 1.21235 1.16699 1.21479 0.92058 0.93186 1.50311 0.94715 1.19461 0.93934 0.94336 0.97168 1.21524 0.91991 0.98456 1.02283 1.21552 0.94555 0.81092 1.02701 1.45894 1.06468 1.10622 1.71041 1.20262 0.83567 0.89612 0.78154 1.90750 1.55685 1.46271 1.49788 1.19973 0.83881 0.88750 0.78006 1.90777 1.55835 1.45836 1.49360 1.45894 1.05682 1.10622 1.71605 1.19668 0.88133 0.81321 1.03862 1.20403 0.95455 1.12390 0.94129 1.22022 0.92954 1.08219 1.00463 1.24700 1.00716 1.04871 0.80314 1.84130 1.29437 1.70843 1.23762 1.24525 0.79930 1.02630 1.00872 0.92546 0.95670 0.95765 0.91772 0.91823 0.90979 0.90841 0.74408 0.74506 0.89289 0.90056 0.82462 0.74971 0.75532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 2 C 0.00 0.07 5.47 84.66 0.46 0.53 16 3 Si 0.95 43.83 27.47 68.60 1.88 45.72 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 7 C -0.53 -30.17 9.66 25.60 0.25 -29.92 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.10 -3.74 5.27 30.59 0.16 -3.58 16 11 C 0.12 3.73 5.67 86.38 0.49 4.22 16 12 N -0.69 -18.54 5.55 -464.41 -2.58 -21.11 16 13 C 0.50 13.58 7.89 87.27 0.69 14.27 16 14 O -0.55 -16.85 16.48 -3.24 -0.05 -16.90 16 15 C 0.51 12.16 7.89 87.27 0.69 12.85 16 16 O -0.54 -14.90 16.48 -3.27 -0.05 -14.96 16 17 N -0.68 -12.28 5.54 -468.12 -2.59 -14.88 16 18 C 0.19 2.77 6.19 85.63 0.53 3.30 16 19 C -0.22 -2.82 5.53 -19.94 -0.11 -2.93 16 20 C -0.22 -2.54 10.87 22.19 0.24 -2.30 16 21 C -0.04 -0.37 12.09 66.97 0.81 0.44 16 22 O -0.19 -2.33 10.65 -2.47 -0.03 -2.35 16 23 C -0.01 -0.11 12.01 66.97 0.80 0.69 16 24 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 25 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 26 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 27 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 31 H 0.42 10.40 7.94 -92.71 -0.74 9.66 16 32 H 0.42 7.05 7.94 -92.71 -0.74 6.32 16 33 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.23 0.47 8.06 -2.91 -0.02 0.45 16 37 H 0.23 1.10 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -72.11 329.43 1.59 -70.52 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -0.42 Total: 16.08 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 5.13 Total: -2.81 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -4.87 Total: -95.29 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.13 Total: -34.22 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.72 kcal Total: -72.11 1.59 -70.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339296807.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.475 kcal (2) G-P(sol) polarization free energy of solvation -72.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds