Wall clock time and date at job start Tue Mar 31 2020 01:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00185 * 2 1 4 4 H 1.48496 * 109.46966 * 239.99812 * 3 2 1 5 5 H 1.48492 * 109.47227 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 120.00399 * 3 2 1 7 7 C 1.37874 * 119.99342 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00568 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47170 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46632 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46784 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99795 * 180.02562 * 12 11 10 14 14 O 1.21347 * 120.00101 * 359.97438 * 13 12 11 15 15 C 1.49457 * 119.99667 * 179.97438 * 13 12 11 16 16 O 1.21353 * 119.99790 * 359.97438 * 15 13 12 17 17 N 1.34771 * 119.99493 * 179.97438 * 15 13 12 18 18 C 1.46505 * 119.99622 * 180.02562 * 17 15 13 19 19 C 1.50703 * 109.47064 * 179.97438 * 18 17 15 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 17 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 17 24 24 H 0.97008 * 119.99500 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47122 * 60.00200 * 9 7 2 26 26 H 1.09002 * 109.47210 * 300.00184 * 9 7 2 27 27 H 1.08992 * 109.47098 * 60.00651 * 10 9 7 28 28 H 1.08992 * 109.47132 * 299.99834 * 10 9 7 29 29 H 1.09001 * 109.47420 * 60.00585 * 11 10 9 30 30 H 1.08992 * 109.47457 * 300.00244 * 11 10 9 31 31 H 0.96995 * 120.00194 * 359.97438 * 12 11 10 32 32 H 0.96996 * 120.00772 * 359.97438 * 17 15 13 33 33 H 1.09002 * 109.47068 * 299.99729 * 18 17 15 34 34 H 1.09001 * 109.47372 * 59.99816 * 18 17 15 35 35 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 36 36 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 37 37 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4799 -4.9871 -0.0025 12 7 2.4319 -6.1007 -0.0031 13 6 1.9825 -7.3714 -0.0042 14 8 0.7895 -7.5930 -0.0043 15 6 2.9537 -8.5074 -0.0055 16 8 4.1468 -8.2856 -0.0059 17 7 2.5043 -9.7780 -0.0061 18 6 3.4563 -10.8916 -0.0067 19 6 2.7027 -12.1967 -0.0067 20 6 2.3089 -12.8777 -1.0978 21 6 1.6410 -14.0360 -0.6387 22 6 1.6670 -13.9940 0.7055 23 8 2.3155 -12.8799 1.0828 24 1 -0.4850 0.8402 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8723 -3.6049 0.8877 28 1 2.8710 -3.6040 -0.8922 29 1 0.8529 -5.0442 -0.8923 30 1 0.8537 -5.0455 0.8876 31 1 3.3856 -5.9235 -0.0034 32 1 1.5507 -9.9552 -0.0054 33 1 4.0829 -10.8334 -0.8967 34 1 4.0831 -10.8343 0.8833 35 1 2.4725 -12.5944 -2.1271 36 1 1.1953 -14.8069 -1.2500 37 1 1.2420 -14.7327 1.3690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339323859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:30 Heat of formation + Delta-G solvation = -67.057469 kcal Electronic energy + Delta-G solvation = -20167.449320 eV Core-core repulsion = 16718.352664 eV Total energy + Delta-G solvation = -3449.096656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.03471 -40.63447 -38.58512 -35.98426 -35.24377 -33.44004 -33.30644 -31.25775 -30.94678 -27.52813 -26.54038 -24.22423 -22.47251 -22.21487 -21.08530 -20.80160 -20.22027 -18.72280 -17.59030 -17.10467 -16.43954 -16.28063 -16.18321 -15.48177 -15.26426 -15.06434 -14.52282 -14.43155 -13.96263 -13.72421 -13.28586 -13.25799 -13.10498 -12.43660 -12.30785 -11.90757 -11.80770 -11.76752 -10.89563 -10.76867 -10.63808 -10.39778 -9.90641 -9.88041 -9.64273 -9.43260 -9.16272 -9.00334 -9.00188 -8.37961 -6.02874 -4.05989 1.09912 1.35796 2.05123 2.36398 2.60484 3.17360 3.32410 3.37000 3.39200 3.66102 4.08518 4.42807 4.47291 4.56333 4.57880 4.87183 5.03347 5.32968 5.33737 5.46522 5.57992 5.59138 5.68194 5.78910 6.00975 6.07080 6.24696 6.53234 6.64987 6.66336 6.83243 6.94394 7.33954 7.61009 7.64208 7.72823 7.95221 8.01461 8.36468 9.00262 9.58293 11.08328 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.058160 B = 0.002201 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.314429 B =12719.294331 C =12996.733556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.690 5.690 13 C 0.501 3.499 14 O -0.525 6.525 15 C 0.512 3.488 16 O -0.518 6.518 17 N -0.703 5.703 18 C 0.202 3.798 19 C -0.042 4.042 20 C -0.179 4.179 21 C -0.218 4.218 22 C -0.026 4.026 23 O -0.170 6.170 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.411 0.589 32 H 0.417 0.583 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 -28.056 -0.498 28.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.342 5.342 13 C 0.281 3.719 14 O -0.401 6.401 15 C 0.293 3.707 16 O -0.393 6.393 17 N -0.359 5.359 18 C 0.080 3.920 19 C -0.092 4.092 20 C -0.199 4.199 21 C -0.238 4.238 22 C -0.095 4.095 23 O -0.066 6.066 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.247 0.753 32 H 0.253 0.747 33 H 0.123 0.877 34 H 0.109 0.891 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.812 -27.801 -0.199 28.215 hybrid contribution 0.283 0.668 -0.199 0.752 sum 5.095 -27.133 -0.397 27.610 Atomic orbital electron populations 1.69959 1.06053 1.26827 1.50459 1.25031 0.94882 0.99335 0.95238 0.86622 0.79541 0.82998 0.78625 1.20223 1.21285 1.20229 1.21162 0.93020 0.90890 1.51094 0.92612 1.19029 0.93797 0.90769 0.97720 1.21930 0.99886 0.92927 1.01337 1.21862 0.91731 0.84674 1.02590 1.46068 1.12273 1.04918 1.70934 1.19910 0.88367 0.84445 0.79198 1.90771 1.15948 1.84646 1.48776 1.20373 0.88871 0.84114 0.77362 1.90777 1.16156 1.84706 1.47642 1.45827 1.11717 1.04407 1.73927 1.19653 0.89532 0.77852 1.04997 1.22182 1.05450 0.96898 0.84638 1.21760 1.02446 0.96052 0.99665 1.21908 1.06047 1.00913 0.94886 1.24182 0.99414 0.89599 0.96286 1.84057 1.57309 1.30424 1.34815 0.92862 0.96195 0.96192 0.92399 0.92401 0.91031 0.91046 0.75263 0.74662 0.87656 0.89064 0.82968 0.83076 0.77756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.11 1.92 5.67 -4.04 -0.02 1.90 16 12 N -0.69 -10.16 5.55 -60.72 -0.34 -10.50 16 13 C 0.50 7.36 7.89 -11.58 -0.09 7.27 16 14 O -0.52 -8.85 16.48 5.50 0.09 -8.76 16 15 C 0.51 6.49 7.89 -11.58 -0.09 6.40 16 16 O -0.52 -7.37 16.48 5.49 0.09 -7.28 16 17 N -0.70 -7.07 5.54 -61.90 -0.34 -7.42 16 18 C 0.20 1.65 6.20 -5.19 -0.03 1.61 16 19 C -0.04 -0.34 6.69 -35.62 -0.24 -0.58 16 20 C -0.18 -1.33 10.81 -39.70 -0.43 -1.76 16 21 C -0.22 -1.43 10.91 -39.71 -0.43 -1.86 16 22 C -0.03 -0.17 12.09 29.41 0.36 0.19 16 23 O -0.17 -1.48 10.65 5.68 0.06 -1.42 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.41 5.48 7.94 -40.82 -0.32 5.16 16 32 H 0.42 4.05 7.94 -40.82 -0.32 3.73 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.21 0.54 8.06 -52.48 -0.42 0.12 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -32.79 333.04 -6.22 -39.01 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.84 Total: 3.00 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.67 Total: -2.19 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.06 Total: -43.82 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.24 Total: -17.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.79 -6.22 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339323859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.050 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds