Wall clock time and date at job start Tue Mar 31 2020 01:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00185 * 2 1 4 4 H 1.48496 * 109.46966 * 239.99812 * 3 2 1 5 5 H 1.48492 * 109.47227 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 120.00399 * 3 2 1 7 7 C 1.37874 * 119.99342 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00568 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47170 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46632 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46784 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99795 * 180.02562 * 12 11 10 14 14 O 1.21347 * 120.00101 * 359.97438 * 13 12 11 15 15 C 1.49457 * 119.99667 * 179.97438 * 13 12 11 16 16 O 1.21353 * 119.99790 * 359.97438 * 15 13 12 17 17 N 1.34771 * 119.99493 * 179.97438 * 15 13 12 18 18 C 1.46505 * 119.99622 * 180.02562 * 17 15 13 19 19 C 1.50703 * 109.47064 * 179.97438 * 18 17 15 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 17 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 17 24 24 H 0.97008 * 119.99500 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47122 * 60.00200 * 9 7 2 26 26 H 1.09002 * 109.47210 * 300.00184 * 9 7 2 27 27 H 1.08992 * 109.47098 * 60.00651 * 10 9 7 28 28 H 1.08992 * 109.47132 * 299.99834 * 10 9 7 29 29 H 1.09001 * 109.47420 * 60.00585 * 11 10 9 30 30 H 1.08992 * 109.47457 * 300.00244 * 11 10 9 31 31 H 0.96995 * 120.00194 * 359.97438 * 12 11 10 32 32 H 0.96996 * 120.00772 * 359.97438 * 17 15 13 33 33 H 1.09002 * 109.47068 * 299.99729 * 18 17 15 34 34 H 1.09001 * 109.47372 * 59.99816 * 18 17 15 35 35 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 36 36 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 37 37 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4799 -4.9871 -0.0025 12 7 2.4319 -6.1007 -0.0031 13 6 1.9825 -7.3714 -0.0042 14 8 0.7895 -7.5930 -0.0043 15 6 2.9537 -8.5074 -0.0055 16 8 4.1468 -8.2856 -0.0059 17 7 2.5043 -9.7780 -0.0061 18 6 3.4563 -10.8916 -0.0067 19 6 2.7027 -12.1967 -0.0067 20 6 2.3089 -12.8777 -1.0978 21 6 1.6410 -14.0360 -0.6387 22 6 1.6670 -13.9940 0.7055 23 8 2.3155 -12.8799 1.0828 24 1 -0.4850 0.8402 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8723 -3.6049 0.8877 28 1 2.8710 -3.6040 -0.8922 29 1 0.8529 -5.0442 -0.8923 30 1 0.8537 -5.0455 0.8876 31 1 3.3856 -5.9235 -0.0034 32 1 1.5507 -9.9552 -0.0054 33 1 4.0829 -10.8334 -0.8967 34 1 4.0831 -10.8343 0.8833 35 1 2.4725 -12.5944 -2.1271 36 1 1.1953 -14.8069 -1.2500 37 1 1.2420 -14.7327 1.3690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339323859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:30 Heat of formation + Delta-G solvation = -90.989319 kcal Electronic energy + Delta-G solvation = -20168.487083 eV Core-core repulsion = 16718.352664 eV Total energy + Delta-G solvation = -3450.134419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.57210 -41.73415 -39.72199 -37.25876 -36.34723 -35.18183 -33.95393 -33.04413 -31.61513 -29.04562 -27.55435 -25.67054 -23.90514 -22.73686 -22.36704 -21.70692 -21.33248 -19.78687 -18.56374 -18.17455 -18.03708 -17.28397 -17.13411 -16.59005 -16.32383 -16.30446 -16.18322 -15.43141 -15.12443 -14.79087 -14.25972 -14.17859 -13.78805 -13.78128 -13.56875 -13.51356 -13.04538 -12.93783 -12.72379 -12.54529 -12.43177 -11.68825 -11.56039 -11.25001 -10.95475 -10.79149 -10.53617 -10.49492 -10.29905 -9.56864 -8.18767 -6.29698 0.26043 0.49941 1.30882 1.42716 1.45276 1.53159 1.69434 1.99964 2.06736 2.42420 2.65629 3.15012 3.36841 3.55757 4.08149 4.08800 4.09858 4.18993 4.32074 4.42278 4.53264 4.86100 4.86415 4.92338 4.93431 4.97984 5.12090 5.15797 5.22685 5.52131 5.53963 5.71526 5.80937 5.85120 6.12839 6.22337 6.26965 6.61992 6.86337 6.87263 7.39551 8.92869 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.058160 B = 0.002201 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.314429 B =12719.294331 C =12996.733556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.685 5.685 13 C 0.502 3.498 14 O -0.548 6.548 15 C 0.520 3.480 16 O -0.533 6.533 17 N -0.690 5.690 18 C 0.204 3.796 19 C -0.061 4.061 20 C -0.182 4.182 21 C -0.232 4.232 22 C -0.026 4.026 23 O -0.190 6.190 24 H 0.263 0.737 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.420 0.580 32 H 0.419 0.581 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.164 -29.130 -0.622 29.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.337 5.337 13 C 0.283 3.717 14 O -0.427 6.427 15 C 0.300 3.700 16 O -0.410 6.410 17 N -0.344 5.344 18 C 0.082 3.918 19 C -0.111 4.111 20 C -0.202 4.202 21 C -0.251 4.251 22 C -0.093 4.093 23 O -0.086 6.086 24 H 0.072 0.928 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.258 0.742 32 H 0.256 0.744 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.181 0.819 36 H 0.188 0.812 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.103 -28.913 -0.326 29.552 hybrid contribution -0.171 0.879 -0.162 0.910 sum 5.931 -28.035 -0.487 28.659 Atomic orbital electron populations 1.70098 1.07805 1.27830 1.51599 1.25997 0.95778 1.03448 0.94831 0.85487 0.78206 0.78073 0.79195 1.19127 1.21115 1.19169 1.21655 0.93728 0.92118 1.50561 0.91717 1.18935 0.94367 0.92610 0.95409 1.21641 0.98623 0.91821 1.02296 1.21490 0.91602 0.84514 1.02025 1.45869 1.12331 1.04553 1.70931 1.20265 0.88423 0.84786 0.78241 1.90761 1.17117 1.85025 1.49761 1.19872 0.88016 0.84267 0.77795 1.90777 1.16370 1.84890 1.48994 1.45846 1.12283 1.04030 1.72225 1.19767 0.89130 0.77226 1.05683 1.22163 1.06766 0.97220 0.84914 1.22057 1.01802 0.96213 1.00094 1.22243 1.06242 1.01211 0.95371 1.24922 0.98186 0.89151 0.97066 1.84045 1.57911 1.31322 1.35358 0.92806 0.98536 0.98575 0.91407 0.91350 0.91659 0.91758 0.74207 0.74403 0.86348 0.88955 0.81851 0.81198 0.74587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 3 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.11 -4.03 5.27 30.60 0.16 -3.87 16 11 C 0.13 4.28 5.67 86.38 0.49 4.77 16 12 N -0.68 -19.55 5.55 -464.39 -2.58 -22.13 16 13 C 0.50 14.39 7.89 87.27 0.69 15.08 16 14 O -0.55 -18.32 16.48 -3.24 -0.05 -18.37 16 15 C 0.52 12.63 7.89 87.27 0.69 13.32 16 16 O -0.53 -14.48 16.48 -3.26 -0.05 -14.54 16 17 N -0.69 -13.14 5.54 -468.12 -2.59 -15.74 16 18 C 0.20 3.07 6.20 85.63 0.53 3.61 16 19 C -0.06 -0.93 6.69 24.83 0.17 -0.76 16 20 C -0.18 -2.43 10.81 22.19 0.24 -2.19 16 21 C -0.23 -2.60 10.91 22.19 0.24 -2.36 16 22 C -0.03 -0.28 12.09 66.97 0.81 0.53 16 23 O -0.19 -3.09 10.65 -2.58 -0.03 -3.11 16 24 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 25 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.42 10.62 7.94 -92.71 -0.74 9.88 16 32 H 0.42 7.78 7.94 -92.71 -0.74 7.04 16 33 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 36 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.24 0.62 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -69.97 333.04 1.50 -68.48 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.37 Total: 15.91 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 4.86 Total: -0.09 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -4.89 Total: -94.10 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.13 Total: -36.02 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -69.97 1.50 -68.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339323859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.511 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds