Wall clock time and date at job start Tue Mar 31 2020 01:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.34770 * 120.00393 * 179.97438 * 11 10 9 13 13 O 1.21613 * 119.99801 * 0.02562 * 12 11 10 14 14 C 1.47420 * 120.00495 * 179.97438 * 12 11 10 15 15 N 1.36067 * 126.44449 * 359.69502 * 14 12 11 16 16 C 1.29937 * 108.47452 * 179.85438 * 15 14 12 17 17 O 1.34041 * 109.24398 * 0.41032 * 16 15 14 18 18 C 1.34249 * 108.22968 * 359.74012 * 17 16 15 19 19 C 1.50701 * 126.53084 * 179.97438 * 18 17 16 20 20 H 1.08997 * 109.82914 * 195.74605 * 19 18 17 21 21 C 1.54388 * 109.82788 * 74.85700 * 19 18 17 22 22 C 1.55456 * 102.18306 * 219.18359 * 21 19 18 23 23 C 1.54946 * 100.98730 * 34.04123 * 22 21 19 24 24 O 1.43239 * 109.82811 * 316.63392 * 19 18 17 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 0.97000 * 120.00040 * 359.97438 * 11 10 9 31 31 H 1.08009 * 125.37775 * 180.11596 * 16 15 14 32 32 H 1.08995 * 110.85031 * 337.31971 * 21 19 18 33 33 H 1.09002 * 110.84571 * 100.94806 * 21 19 18 34 34 H 1.08993 * 111.06145 * 276.12253 * 22 21 19 35 35 H 1.08998 * 111.18192 * 152.00749 * 22 21 19 36 36 H 1.09005 * 110.30770 * 204.68994 * 23 22 21 37 37 H 1.08998 * 110.30949 * 82.52167 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 7 5.4865 -2.6366 0.0175 12 6 6.1603 -3.8037 0.0233 13 8 5.5522 -4.8569 0.0224 14 6 7.6345 -3.8038 0.0295 15 7 8.4429 -2.7093 0.0243 16 6 9.6788 -3.1103 0.0358 17 8 9.7086 -4.4503 0.0395 18 6 8.4431 -4.8985 0.0357 19 6 8.0017 -6.3394 0.0372 20 1 6.9509 -6.4046 -0.2449 21 6 8.2058 -6.9482 1.4412 22 6 8.7134 -8.3792 1.1078 23 6 9.5311 -8.1098 -0.1805 24 8 8.7996 -7.0929 -0.8834 25 1 -0.4849 0.8400 0.0004 26 1 3.8786 -0.6821 -0.8838 27 1 3.8711 -0.6785 0.8962 28 1 3.6545 -3.1486 0.9003 29 1 3.6618 -3.1522 -0.8796 30 1 5.9715 -1.7966 0.0178 31 1 10.5454 -2.4655 0.0370 32 1 8.9574 -6.3908 2.0002 33 1 7.2636 -6.9869 1.9879 34 1 7.8806 -9.0541 0.9105 35 1 9.3499 -8.7666 1.9032 36 1 9.5954 -9.0152 -0.7841 37 1 10.5288 -7.7513 0.0728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342642588.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:17 Heat of formation + Delta-G solvation = -65.304001 kcal Electronic energy + Delta-G solvation = -21440.216002 eV Core-core repulsion = 17991.195382 eV Total energy + Delta-G solvation = -3449.020620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.60868 -39.67085 -39.16786 -35.08712 -34.93841 -32.77835 -32.61045 -31.79951 -30.24814 -28.40118 -25.53575 -23.67137 -23.53201 -22.13455 -21.42181 -20.72212 -20.37291 -18.15583 -17.09299 -16.92270 -16.89005 -16.67320 -16.00429 -15.52752 -15.00433 -14.95166 -14.29416 -14.08037 -13.96572 -13.45092 -13.35001 -13.30741 -12.58076 -12.20203 -12.12918 -11.66235 -11.52905 -11.47433 -11.29286 -11.18378 -10.97055 -10.40940 -10.37237 -10.09332 -9.95168 -9.73012 -9.31448 -9.14006 -8.63110 -8.53038 -6.09661 -4.09772 0.92914 1.96036 2.36091 3.28189 3.31964 3.35721 3.38035 3.42609 3.57692 3.91968 4.11129 4.19168 4.40142 4.50598 4.74715 4.85807 4.88911 5.01888 5.23590 5.29833 5.32192 5.36091 5.42905 5.52402 5.62275 5.84308 5.94206 6.11196 6.19397 6.55807 6.57177 6.69904 7.11940 7.24494 7.28843 7.67376 7.87404 8.40034 8.47543 8.94286 9.50668 11.03275 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030632 B = 0.003480 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.868385 B = 8043.760011 C = 8740.387969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.129 3.871 11 N -0.703 5.703 12 C 0.593 3.407 13 O -0.542 6.542 14 C -0.057 4.057 15 N -0.462 5.462 16 C 0.173 3.827 17 O -0.192 6.192 18 C 0.025 3.975 19 C 0.155 3.845 20 H 0.148 0.852 21 C -0.146 4.146 22 C -0.154 4.154 23 C 0.046 3.954 24 O -0.368 6.368 25 H 0.265 0.735 26 H 0.019 0.981 27 H 0.023 0.977 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.406 0.594 31 H 0.255 0.745 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.753 -12.703 2.484 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.061 4.061 10 C 0.007 3.993 11 N -0.352 5.352 12 C 0.377 3.623 13 O -0.421 6.421 14 C -0.178 4.178 15 N -0.191 5.191 16 C -0.055 4.055 17 O -0.078 6.078 18 C -0.032 4.032 19 C 0.097 3.903 20 H 0.165 0.835 21 C -0.184 4.184 22 C -0.192 4.192 23 C -0.030 4.030 24 O -0.287 6.287 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.240 0.760 31 H 0.271 0.729 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.942 -12.652 2.254 26.296 hybrid contribution 1.047 1.007 0.200 1.466 sum 23.988 -11.645 2.455 26.778 Atomic orbital electron populations 1.69902 1.06285 1.27061 1.50450 1.24991 0.94762 0.99155 0.94329 0.86763 0.80326 0.83507 0.78587 1.20181 1.21276 1.18977 1.20907 0.88553 0.94921 1.51704 0.90553 1.19806 0.97995 0.91206 0.97057 1.21618 0.75279 1.00501 1.01911 1.46153 1.09259 1.07875 1.71877 1.16731 0.83472 0.84792 0.77289 1.90728 1.68226 1.31084 1.52069 1.21710 0.96050 0.88378 1.11613 1.70792 1.01316 1.30428 1.16535 1.28067 0.97647 0.79094 1.00693 1.84373 1.29724 1.24700 1.69002 1.24175 0.80587 0.97644 1.00795 1.21845 0.97222 0.80546 0.90686 0.83522 1.23218 1.03665 0.95692 0.95801 1.23329 1.00774 0.96906 0.98158 1.23482 0.95111 0.91404 0.93032 1.88547 1.60715 1.47175 1.32231 0.92550 0.96283 0.95866 0.91546 0.91536 0.75967 0.72924 0.90305 0.88394 0.89604 0.89423 0.89098 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -14.74 9.66 -34.44 -0.33 -15.08 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.02 -0.54 4.15 -27.88 -0.12 -0.65 16 10 C 0.13 2.68 5.61 -4.05 -0.02 2.66 16 11 N -0.70 -12.77 5.55 -61.39 -0.34 -13.11 16 12 C 0.59 10.57 7.81 -12.52 -0.10 10.47 16 13 O -0.54 -10.54 14.57 5.27 0.08 -10.46 16 14 C -0.06 -0.88 6.99 -83.02 -0.58 -1.46 16 15 N -0.46 -6.31 11.06 -11.48 -0.13 -6.43 16 16 C 0.17 1.71 13.19 51.96 0.69 2.40 16 17 O -0.19 -2.23 10.73 6.50 0.07 -2.16 16 18 C 0.03 0.34 6.20 -35.08 -0.22 0.12 16 19 C 0.15 1.92 3.77 -27.16 -0.10 1.82 16 20 H 0.15 2.09 5.84 -51.93 -0.30 1.78 16 21 C -0.15 -1.36 6.55 -24.70 -0.16 -1.52 16 22 C -0.15 -1.08 7.16 -24.40 -0.17 -1.25 16 23 C 0.05 0.38 7.78 38.18 0.30 0.67 16 24 O -0.37 -4.54 11.00 -35.29 -0.39 -4.92 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.02 0.43 7.58 -51.93 -0.39 0.04 16 27 H 0.02 0.54 7.19 -51.93 -0.37 0.16 16 28 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.41 6.81 8.20 -40.82 -0.33 6.48 16 31 H 0.26 1.05 8.06 -52.48 -0.42 0.62 16 32 H 0.08 0.69 7.84 -51.93 -0.41 0.29 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -33.84 317.43 -5.52 -39.36 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.78 Total: 2.87 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.92 Total: 0.10 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.31 Total: -46.26 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.24 Total: -17.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.84 -5.52 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342642588.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.943 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds