Wall clock time and date at job start Tue Mar 31 2020 01:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.34770 * 120.00393 * 179.97438 * 11 10 9 13 13 O 1.21613 * 119.99801 * 0.02562 * 12 11 10 14 14 C 1.47420 * 120.00495 * 179.97438 * 12 11 10 15 15 N 1.36067 * 126.44449 * 359.69502 * 14 12 11 16 16 C 1.29937 * 108.47452 * 179.85438 * 15 14 12 17 17 O 1.34041 * 109.24398 * 0.41032 * 16 15 14 18 18 C 1.34249 * 108.22968 * 359.74012 * 17 16 15 19 19 C 1.50701 * 126.53084 * 179.97438 * 18 17 16 20 20 H 1.08997 * 109.82914 * 195.74605 * 19 18 17 21 21 C 1.54388 * 109.82788 * 74.85700 * 19 18 17 22 22 C 1.55456 * 102.18306 * 219.18359 * 21 19 18 23 23 C 1.54946 * 100.98730 * 34.04123 * 22 21 19 24 24 O 1.43239 * 109.82811 * 316.63392 * 19 18 17 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 0.97000 * 120.00040 * 359.97438 * 11 10 9 31 31 H 1.08009 * 125.37775 * 180.11596 * 16 15 14 32 32 H 1.08995 * 110.85031 * 337.31971 * 21 19 18 33 33 H 1.09002 * 110.84571 * 100.94806 * 21 19 18 34 34 H 1.08993 * 111.06145 * 276.12253 * 22 21 19 35 35 H 1.08998 * 111.18192 * 152.00749 * 22 21 19 36 36 H 1.09005 * 110.30770 * 204.68994 * 23 22 21 37 37 H 1.08998 * 110.30949 * 82.52167 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 7 5.4865 -2.6366 0.0175 12 6 6.1603 -3.8037 0.0233 13 8 5.5522 -4.8569 0.0224 14 6 7.6345 -3.8038 0.0295 15 7 8.4429 -2.7093 0.0243 16 6 9.6788 -3.1103 0.0358 17 8 9.7086 -4.4503 0.0395 18 6 8.4431 -4.8985 0.0357 19 6 8.0017 -6.3394 0.0372 20 1 6.9509 -6.4046 -0.2449 21 6 8.2058 -6.9482 1.4412 22 6 8.7134 -8.3792 1.1078 23 6 9.5311 -8.1098 -0.1805 24 8 8.7996 -7.0929 -0.8834 25 1 -0.4849 0.8400 0.0004 26 1 3.8786 -0.6821 -0.8838 27 1 3.8711 -0.6785 0.8962 28 1 3.6545 -3.1486 0.9003 29 1 3.6618 -3.1522 -0.8796 30 1 5.9715 -1.7966 0.0178 31 1 10.5454 -2.4655 0.0370 32 1 8.9574 -6.3908 2.0002 33 1 7.2636 -6.9869 1.9879 34 1 7.8806 -9.0541 0.9105 35 1 9.3499 -8.7666 1.9032 36 1 9.5954 -9.0152 -0.7841 37 1 10.5288 -7.7513 0.0728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342642588.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:16 Heat of formation + Delta-G solvation = -93.122164 kcal Electronic energy + Delta-G solvation = -21441.422288 eV Core-core repulsion = 17991.195382 eV Total energy + Delta-G solvation = -3450.226906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.55853 -40.68841 -40.37277 -36.76007 -35.95366 -34.80098 -33.42859 -32.64553 -32.09579 -29.34004 -27.22338 -24.93102 -24.44367 -22.85469 -22.72123 -22.21583 -21.60275 -19.35330 -18.97660 -17.91043 -17.85986 -17.60790 -17.04888 -16.67489 -16.49320 -16.24088 -16.04942 -15.22944 -14.99214 -14.87965 -14.65604 -14.50154 -14.15482 -13.39064 -13.09773 -12.96998 -12.86347 -12.50963 -12.29517 -12.27966 -12.19512 -12.01801 -11.84418 -11.78305 -11.54650 -11.24299 -10.89428 -10.79941 -10.29417 -9.96493 -8.31189 -6.38148 -0.11710 0.99611 1.38559 1.40225 1.43972 1.51916 2.08083 2.12123 2.35803 2.72452 3.03636 3.03760 3.29438 3.41121 3.74095 3.82861 4.03732 4.13645 4.27136 4.30406 4.35367 4.38859 4.57809 4.71726 4.73518 4.77536 4.86362 4.95013 5.04829 5.12667 5.17270 5.34494 5.36629 5.59735 5.80435 6.19347 6.25302 6.54221 6.69212 7.02550 7.26430 8.85349 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030632 B = 0.003480 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.868385 B = 8043.760011 C = 8740.387969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.538 4.538 8 H 0.034 0.966 9 C -0.014 4.014 10 C 0.144 3.856 11 N -0.700 5.700 12 C 0.591 3.409 13 O -0.566 6.566 14 C -0.084 4.084 15 N -0.494 5.494 16 C 0.203 3.797 17 O -0.189 6.189 18 C 0.030 3.970 19 C 0.150 3.850 20 H 0.120 0.880 21 C -0.143 4.143 22 C -0.144 4.144 23 C 0.037 3.963 24 O -0.391 6.391 25 H 0.269 0.731 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.414 0.586 31 H 0.311 0.689 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.516 -11.968 2.963 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.164 1.164 7 C -0.576 4.576 8 H 0.052 0.948 9 C -0.051 4.051 10 C 0.021 3.979 11 N -0.349 5.349 12 C 0.377 3.623 13 O -0.447 6.447 14 C -0.203 4.203 15 N -0.222 5.222 16 C -0.025 4.025 17 O -0.075 6.075 18 C -0.028 4.028 19 C 0.092 3.908 20 H 0.138 0.862 21 C -0.181 4.181 22 C -0.181 4.181 23 C -0.038 4.038 24 O -0.311 6.311 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.251 0.749 31 H 0.326 0.674 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 26.725 -11.929 2.735 29.394 hybrid contribution -0.078 0.671 0.026 0.676 sum 26.648 -11.258 2.761 29.060 Atomic orbital electron populations 1.70060 1.08420 1.28436 1.51895 1.26018 0.95666 1.03658 0.93687 0.85591 0.79608 0.77708 0.79323 1.19067 1.20949 1.16428 1.21215 0.91220 0.93580 1.51578 0.94767 1.19654 0.94727 0.92817 0.97932 1.21178 0.77161 0.98798 1.00761 1.45917 1.07868 1.08668 1.72487 1.17077 0.84838 0.84063 0.76289 1.90716 1.69267 1.31814 1.52892 1.21311 0.94712 0.89930 1.14342 1.70754 1.02577 1.30144 1.18738 1.29345 0.98005 0.78641 0.96488 1.84414 1.28463 1.25673 1.68962 1.24279 0.81073 0.97730 0.99673 1.21734 0.95994 0.80626 0.92461 0.86242 1.23220 1.03863 0.97101 0.93914 1.23340 1.01048 0.95414 0.98349 1.23766 0.95298 0.91110 0.93635 1.88515 1.61106 1.48112 1.33350 0.92257 0.94971 0.94692 0.92708 0.92952 0.74944 0.67441 0.89540 0.88796 0.89376 0.86749 0.87476 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.01 0.42 5.47 84.66 0.46 0.88 16 3 Si 0.96 43.40 27.47 68.60 1.88 45.28 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 7 C -0.54 -31.14 9.66 25.60 0.25 -30.89 16 8 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 9 C -0.01 -0.63 4.15 29.85 0.12 -0.50 16 10 C 0.14 6.14 5.61 86.38 0.48 6.62 16 11 N -0.70 -25.41 5.55 -466.39 -2.59 -28.00 16 12 C 0.59 21.41 7.81 86.66 0.68 22.09 16 13 O -0.57 -22.93 14.57 -4.07 -0.06 -22.99 16 14 C -0.08 -2.54 6.99 40.41 0.28 -2.26 16 15 N -0.49 -12.45 11.06 -305.15 -3.37 -15.82 16 16 C 0.20 3.28 13.19 130.52 1.72 5.01 16 17 O -0.19 -3.88 10.73 0.60 0.01 -3.87 16 18 C 0.03 0.80 6.20 25.19 0.16 0.95 16 19 C 0.15 3.71 3.77 30.32 0.11 3.82 16 20 H 0.12 3.59 5.84 -2.39 -0.01 3.58 16 21 C -0.14 -2.51 6.55 31.91 0.21 -2.30 16 22 C -0.14 -1.71 7.16 32.10 0.23 -1.48 16 23 C 0.04 0.54 7.78 72.65 0.57 1.10 16 24 O -0.39 -9.37 11.00 -148.92 -1.64 -11.01 16 25 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.03 1.42 7.58 -2.38 -0.02 1.40 16 27 H 0.03 1.55 7.19 -2.39 -0.02 1.53 16 28 H 0.05 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.41 13.50 8.20 -92.71 -0.76 12.74 16 31 H 0.31 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.09 1.36 7.84 -2.39 -0.02 1.35 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -76.27 317.43 0.09 -76.19 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.28 Total: 16.41 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 5.28 Total: 3.04 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -5.66 Total: -103.04 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.69 Total: -37.87 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.28 kcal Total: -76.27 0.09 -76.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342642588.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.937 kcal (2) G-P(sol) polarization free energy of solvation -76.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds