Wall clock time and date at job start Tue Mar 31 2020 02:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47160 * 2 1 4 4 C 1.50697 * 109.47502 * 120.00247 * 2 1 3 5 5 O 1.33648 * 125.80034 * 299.97738 * 4 2 1 6 6 C 1.34222 * 110.90963 * 180.02562 * 5 4 2 7 7 C 1.34179 * 109.12131 * 359.97438 * 6 5 4 8 8 C 1.36423 * 125.80158 * 120.34724 * 4 2 1 9 9 C 1.47375 * 127.19268 * 359.97438 * 8 4 2 10 10 O 1.21614 * 120.00379 * 0.16941 * 9 8 4 11 11 N 1.34771 * 119.99946 * 180.17268 * 9 8 4 12 12 C 1.46501 * 120.00313 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47485 * 180.02562 * 12 11 9 14 14 O 1.21296 * 120.00040 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00086 * 179.97438 * 13 12 11 16 16 C 1.37099 * 120.00095 * 179.97438 * 15 13 12 17 17 H 1.07998 * 119.99685 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00173 * 179.97438 * 16 15 13 19 19 N 1.31406 * 119.99957 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00073 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.46900 * 90.00452 * 20 18 16 22 22 H 1.48498 * 109.47010 * 210.00460 * 20 18 16 23 23 H 1.48495 * 109.47008 * 330.00321 * 20 18 16 24 24 H 1.08999 * 109.47190 * 300.00020 * 1 2 3 25 25 H 1.09004 * 109.47315 * 59.99799 * 1 2 3 26 26 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46877 * 240.00570 * 2 1 3 28 28 H 1.08997 * 109.47281 * 60.00665 * 3 2 1 29 29 H 1.09001 * 109.47334 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47628 * 300.00013 * 3 2 1 31 31 H 1.08003 * 125.43772 * 179.97438 * 6 5 4 32 32 H 1.08002 * 127.01820 * 179.97438 * 7 6 5 33 33 H 0.97003 * 120.00464 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.46840 * 300.00112 * 12 11 9 35 35 H 1.08998 * 109.47265 * 59.99588 * 12 11 9 36 36 H 0.96997 * 119.99775 * 359.97438 * 15 13 12 37 37 H 0.97000 * 120.00395 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7824 -0.3561 2.4946 6 6 2.3778 -1.1973 3.3545 7 6 3.0410 -2.1364 2.6626 8 6 2.8255 -1.8204 1.2431 9 6 3.3526 -2.5520 0.0774 10 8 3.0900 -2.1732 -1.0480 11 7 4.1258 -3.6409 0.2586 12 6 4.6494 -4.3686 -0.9000 13 6 5.4764 -5.5366 -0.4280 14 8 5.6152 -5.7409 0.7595 15 7 6.0618 -6.3543 -1.3254 16 6 6.8146 -7.4166 -0.8959 17 1 6.9382 -7.5984 0.1614 18 6 7.4177 -8.2598 -1.8210 19 7 7.2669 -8.0389 -3.1076 20 14 8.4428 -9.7077 -1.2359 21 1 7.5729 -10.9017 -1.0863 22 1 9.5088 -9.9931 -2.2295 23 1 9.0617 -9.3790 0.0734 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 2.3306 -1.1292 4.4313 32 1 3.6198 -2.9541 3.0662 33 1 4.3356 -3.9429 1.1562 34 1 3.8195 -4.7327 -1.5058 35 1 5.2702 -3.7014 -1.4979 36 1 5.9505 -6.1911 -2.2750 37 1 7.6882 -8.6273 -3.7534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344116125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:52 Heat of formation + Delta-G solvation = -75.050025 kcal Electronic energy + Delta-G solvation = -21165.371775 eV Core-core repulsion = 17715.928536 eV Total energy + Delta-G solvation = -3449.443239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.66710 -39.35793 -38.06248 -35.67713 -34.42172 -33.69427 -32.81578 -31.38213 -29.27854 -27.77585 -27.35017 -24.78012 -23.08172 -22.59154 -20.50561 -19.90825 -19.30515 -18.14480 -17.75195 -16.28629 -16.13765 -15.59893 -15.36304 -15.12265 -14.96112 -14.62056 -14.34063 -13.91318 -13.72804 -13.45232 -13.27358 -12.98269 -12.74872 -12.38721 -12.18572 -11.95991 -11.64380 -11.43683 -11.40802 -11.13235 -11.09272 -10.46531 -10.32523 -9.85736 -9.73081 -9.64475 -8.86374 -8.64383 -8.59955 -8.10956 -6.52195 -3.94249 1.35747 2.01008 2.71295 3.11158 3.21471 3.26245 3.44920 3.49134 3.73906 4.11169 4.31534 4.69338 4.83561 4.87253 4.89454 4.93194 5.16382 5.23388 5.39843 5.43046 5.54523 5.61483 5.71935 5.78447 5.91103 5.95659 5.95705 6.03532 6.06471 6.15819 6.24287 6.69816 6.96849 7.45346 7.83324 7.91229 8.42515 8.46907 9.03808 9.38379 9.86291 10.64704 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036317 B = 0.003144 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.814198 B = 8904.275641 C = 9484.032219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.036 4.036 3 C -0.145 4.145 4 C 0.084 3.916 5 O -0.175 6.175 6 C -0.045 4.045 7 C -0.184 4.184 8 C -0.238 4.238 9 C 0.588 3.412 10 O -0.551 6.551 11 N -0.698 5.698 12 C 0.109 3.891 13 C 0.428 3.572 14 O -0.598 6.598 15 N -0.548 5.548 16 C -0.305 4.305 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.269 1.269 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.133 0.867 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.207 0.793 32 H 0.160 0.840 33 H 0.411 0.589 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.396 0.604 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.783 15.127 7.101 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.054 4.054 3 C -0.202 4.202 4 C 0.030 3.970 5 O -0.071 6.071 6 C -0.110 4.110 7 C -0.203 4.203 8 C -0.243 4.243 9 C 0.376 3.624 10 O -0.432 6.432 11 N -0.351 5.351 12 C -0.018 4.018 13 C 0.214 3.786 14 O -0.484 6.484 15 N -0.183 5.183 16 C -0.435 4.435 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.151 0.849 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.224 0.776 32 H 0.177 0.823 33 H 0.250 0.750 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.230 0.770 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.926 15.343 7.003 20.095 hybrid contribution 0.797 -1.144 0.242 1.415 sum -10.129 14.198 7.245 18.886 Atomic orbital electron populations 1.21836 0.93522 1.02528 1.02365 1.20333 0.96510 0.96323 0.92191 1.21836 1.01665 0.94383 1.02359 1.22791 0.95897 0.94279 0.83998 1.83727 1.59868 1.48316 1.15158 1.23833 0.99756 0.91973 0.95471 1.22983 1.03913 1.01944 0.91482 1.21161 1.08245 1.00957 0.93909 1.17144 0.78066 0.79854 0.87379 1.90683 1.60268 1.67929 1.24358 1.45495 1.50538 1.27927 1.11165 1.20970 0.98533 0.93896 0.88408 1.19736 0.85788 0.86004 0.87115 1.90493 1.66398 1.75116 1.16413 1.41789 1.43400 1.24617 1.08516 1.19732 1.25597 1.03316 0.94834 0.87676 1.25324 0.98103 0.99404 0.94860 1.69611 1.44188 1.39132 1.00530 0.85811 0.79093 0.80565 0.78557 1.20260 1.20785 1.19309 0.92380 0.91427 0.92177 0.84927 0.92384 0.92174 0.91426 0.77629 0.82267 0.75046 0.89694 0.89686 0.77012 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.18 37.15 0.34 -1.02 16 2 C -0.04 -0.41 3.25 -91.78 -0.30 -0.70 16 3 C -0.15 -1.37 9.18 37.16 0.34 -1.02 16 4 C 0.08 1.09 5.88 -34.96 -0.21 0.88 16 5 O -0.17 -2.03 10.52 7.65 0.08 -1.95 16 6 C -0.04 -0.45 12.03 29.30 0.35 -0.09 16 7 C -0.18 -2.21 10.60 -37.45 -0.40 -2.61 16 8 C -0.24 -3.47 6.31 -103.28 -0.65 -4.12 16 9 C 0.59 10.01 7.81 -12.54 -0.10 9.91 16 10 O -0.55 -10.30 14.50 5.27 0.08 -10.23 16 11 N -0.70 -12.26 5.52 -62.58 -0.35 -12.60 16 12 C 0.11 2.05 6.15 -5.19 -0.03 2.02 16 13 C 0.43 9.88 7.85 -10.99 -0.09 9.79 16 14 O -0.60 -15.36 15.24 5.54 0.08 -15.28 16 15 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 16 16 C -0.31 -8.30 9.68 -14.93 -0.14 -8.45 16 17 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 20 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.13 1.79 5.52 -51.93 -0.29 1.50 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.21 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.16 1.72 7.74 -52.49 -0.41 1.31 16 33 H 0.41 7.13 6.61 -40.82 -0.27 6.86 16 34 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 35 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 324.85 15.07 4.90 4.90 Total: -1.00 -31.35 324.85 -5.14 -36.49 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -4.60 Total: 14.84 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -0.98 Total: 5.16 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.32 Total: -49.42 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: 0.24 Total: -27.46 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.35 -5.14 -36.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344116125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.562 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds