Wall clock time and date at job start Tue Mar 31 2020 02:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47160 * 2 1 4 4 C 1.50697 * 109.47502 * 120.00247 * 2 1 3 5 5 O 1.33648 * 125.80034 * 299.97738 * 4 2 1 6 6 C 1.34222 * 110.90963 * 180.02562 * 5 4 2 7 7 C 1.34179 * 109.12131 * 359.97438 * 6 5 4 8 8 C 1.36423 * 125.80158 * 120.34724 * 4 2 1 9 9 C 1.47375 * 127.19268 * 359.97438 * 8 4 2 10 10 O 1.21614 * 120.00379 * 0.16941 * 9 8 4 11 11 N 1.34771 * 119.99946 * 180.17268 * 9 8 4 12 12 C 1.46501 * 120.00313 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47485 * 180.02562 * 12 11 9 14 14 O 1.21296 * 120.00040 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00086 * 179.97438 * 13 12 11 16 16 C 1.37099 * 120.00095 * 179.97438 * 15 13 12 17 17 H 1.07998 * 119.99685 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00173 * 179.97438 * 16 15 13 19 19 N 1.31406 * 119.99957 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00073 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.46900 * 90.00452 * 20 18 16 22 22 H 1.48498 * 109.47010 * 210.00460 * 20 18 16 23 23 H 1.48495 * 109.47008 * 330.00321 * 20 18 16 24 24 H 1.08999 * 109.47190 * 300.00020 * 1 2 3 25 25 H 1.09004 * 109.47315 * 59.99799 * 1 2 3 26 26 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46877 * 240.00570 * 2 1 3 28 28 H 1.08997 * 109.47281 * 60.00665 * 3 2 1 29 29 H 1.09001 * 109.47334 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47628 * 300.00013 * 3 2 1 31 31 H 1.08003 * 125.43772 * 179.97438 * 6 5 4 32 32 H 1.08002 * 127.01820 * 179.97438 * 7 6 5 33 33 H 0.97003 * 120.00464 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.46840 * 300.00112 * 12 11 9 35 35 H 1.08998 * 109.47265 * 59.99588 * 12 11 9 36 36 H 0.96997 * 119.99775 * 359.97438 * 15 13 12 37 37 H 0.97000 * 120.00395 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7824 -0.3561 2.4946 6 6 2.3778 -1.1973 3.3545 7 6 3.0410 -2.1364 2.6626 8 6 2.8255 -1.8204 1.2431 9 6 3.3526 -2.5520 0.0774 10 8 3.0900 -2.1732 -1.0480 11 7 4.1258 -3.6409 0.2586 12 6 4.6494 -4.3686 -0.9000 13 6 5.4764 -5.5366 -0.4280 14 8 5.6152 -5.7409 0.7595 15 7 6.0618 -6.3543 -1.3254 16 6 6.8146 -7.4166 -0.8959 17 1 6.9382 -7.5984 0.1614 18 6 7.4177 -8.2598 -1.8210 19 7 7.2669 -8.0389 -3.1076 20 14 8.4428 -9.7077 -1.2359 21 1 7.5729 -10.9017 -1.0863 22 1 9.5088 -9.9931 -2.2295 23 1 9.0617 -9.3790 0.0734 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 2.3306 -1.1292 4.4313 32 1 3.6198 -2.9541 3.0662 33 1 4.3356 -3.9429 1.1562 34 1 3.8195 -4.7327 -1.5058 35 1 5.2702 -3.7014 -1.4979 36 1 5.9505 -6.1911 -2.2750 37 1 7.6882 -8.6273 -3.7534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344116125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:51 Heat of formation + Delta-G solvation = -96.976886 kcal Electronic energy + Delta-G solvation = -21166.322595 eV Core-core repulsion = 17715.928536 eV Total energy + Delta-G solvation = -3450.394059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.60313 -40.87560 -39.80481 -36.59381 -36.19622 -35.29590 -33.85348 -33.37002 -30.25803 -29.31918 -28.08228 -26.63323 -24.32800 -23.44062 -21.65271 -21.41883 -20.73035 -20.00946 -18.95615 -17.58368 -17.25757 -17.05318 -16.84844 -16.63435 -16.31116 -15.89263 -15.68002 -15.35786 -15.33997 -14.70561 -14.17264 -14.03638 -13.82461 -13.62238 -13.62161 -13.54392 -13.06066 -12.91809 -12.47129 -12.26125 -12.19599 -12.13180 -11.99061 -11.58565 -11.01510 -10.87078 -10.59015 -10.25167 -10.10334 -9.57119 -8.52283 -6.02725 0.29525 1.10718 1.35593 1.42285 1.54900 1.76418 1.87913 2.09305 2.26157 2.32255 3.09600 3.14795 3.47543 3.71909 3.83060 4.01535 4.13515 4.19585 4.34947 4.39893 4.40017 4.57774 4.70333 4.75574 4.88803 4.89918 4.97184 5.11994 5.22303 5.28796 5.29705 5.37049 5.44110 5.90069 6.02674 6.43493 6.49601 7.01722 7.08983 7.41990 7.92227 8.64638 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036317 B = 0.003144 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.814198 B = 8904.275641 C = 9484.032219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C -0.140 4.140 4 C 0.087 3.913 5 O -0.172 6.172 6 C -0.023 4.023 7 C -0.206 4.206 8 C -0.272 4.272 9 C 0.587 3.413 10 O -0.573 6.573 11 N -0.701 5.701 12 C 0.122 3.878 13 C 0.432 3.568 14 O -0.624 6.624 15 N -0.557 5.557 16 C -0.339 4.339 17 H 0.086 0.914 18 C -0.010 4.010 19 N -0.916 5.916 20 Si 0.997 3.003 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.270 1.270 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.253 0.747 32 H 0.166 0.834 33 H 0.412 0.588 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.399 0.601 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.390 15.954 8.070 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.059 4.059 3 C -0.197 4.197 4 C 0.033 3.967 5 O -0.068 6.068 6 C -0.088 4.088 7 C -0.225 4.225 8 C -0.276 4.276 9 C 0.377 3.623 10 O -0.456 6.456 11 N -0.354 5.354 12 C -0.005 4.005 13 C 0.219 3.781 14 O -0.512 6.512 15 N -0.193 5.193 16 C -0.468 4.468 17 H 0.104 0.896 18 C -0.211 4.211 19 N -0.555 5.555 20 Si 0.820 3.180 21 H -0.195 1.195 22 H -0.196 1.196 23 H -0.194 1.194 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.269 0.731 32 H 0.184 0.816 33 H 0.250 0.750 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.233 0.767 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.548 16.188 7.966 21.421 hybrid contribution 0.938 -1.335 -0.020 1.631 sum -10.610 14.854 7.946 19.909 Atomic orbital electron populations 1.21813 0.91875 1.02237 1.03795 1.20366 0.97860 0.97026 0.90615 1.21814 1.00898 0.93212 1.03792 1.23041 0.95021 0.93687 0.84976 1.83763 1.59767 1.48481 1.14740 1.24669 0.97196 0.90028 0.96878 1.23140 1.05488 1.03384 0.90488 1.21150 1.10068 1.02120 0.94263 1.17503 0.77410 0.79413 0.88001 1.90668 1.61021 1.68429 1.25462 1.45497 1.50970 1.28247 1.10687 1.20805 0.98329 0.92434 0.88974 1.20382 0.84958 0.86250 0.86509 1.90468 1.67171 1.75955 1.17654 1.41829 1.43824 1.24761 1.08867 1.19746 1.27596 1.05077 0.94361 0.89571 1.26134 0.98592 1.01456 0.94868 1.69676 1.44565 1.40019 1.01280 0.84862 0.77697 0.77283 0.78118 1.19524 1.19589 1.19428 0.91237 0.89708 0.93314 0.87391 0.91236 0.93341 0.89706 0.73116 0.81636 0.74952 0.88567 0.88559 0.76654 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.18 71.98 0.66 -1.76 16 2 C -0.04 -0.89 3.25 -11.54 -0.04 -0.93 16 3 C -0.14 -2.42 9.18 71.98 0.66 -1.76 16 4 C 0.09 2.17 5.88 25.26 0.15 2.31 16 5 O -0.17 -3.61 10.52 4.44 0.05 -3.56 16 6 C -0.02 -0.39 12.03 66.89 0.80 0.41 16 7 C -0.21 -4.72 10.60 23.65 0.25 -4.47 16 8 C -0.27 -7.85 6.31 -18.99 -0.12 -7.97 16 9 C 0.59 20.25 7.81 86.65 0.68 20.92 16 10 O -0.57 -21.79 14.50 -4.07 -0.06 -21.85 16 11 N -0.70 -24.88 5.52 -470.16 -2.60 -27.47 16 12 C 0.12 4.61 6.15 85.63 0.53 5.14 16 13 C 0.43 20.28 7.85 87.66 0.69 20.97 16 14 O -0.62 -32.72 15.24 -3.08 -0.05 -32.77 16 15 N -0.56 -28.22 5.29 -306.99 -1.62 -29.85 16 16 C -0.34 -18.74 9.68 84.04 0.81 -17.92 16 17 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 18 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 19 N -0.92 -48.68 13.05 21.66 0.28 -48.40 16 20 Si 1.00 41.75 29.55 68.60 2.03 43.78 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.11 2.96 5.52 -2.38 -0.01 2.94 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.25 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.17 3.46 7.74 -2.91 -0.02 3.44 16 33 H 0.41 14.51 6.61 -92.71 -0.61 13.90 16 34 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 36 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 37 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -67.68 324.85 3.34 -64.34 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: -0.23 Total: 40.88 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 5.54 Total: 14.91 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -3.94 Total: -105.72 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -0.06 Total: -58.18 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -67.68 3.34 -64.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344116125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.641 kcal (2) G-P(sol) polarization free energy of solvation -67.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds