Wall clock time and date at job start Tue Mar 31 2020 01:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00128 * 2 1 4 4 H 1.48497 * 109.46798 * 274.68366 * 3 2 1 5 5 H 1.48498 * 109.46900 * 34.68189 * 3 2 1 6 6 H 1.48503 * 109.46978 * 154.68325 * 3 2 1 7 7 C 1.37880 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99759 * 354.28027 * 7 2 1 9 9 C 1.50695 * 119.99927 * 174.28706 * 7 2 1 10 10 C 1.52995 * 115.55309 * 94.15876 * 9 7 2 11 11 N 1.46501 * 109.47282 * 39.92166 * 10 9 7 12 12 C 1.35166 * 124.25320 * 84.53752 * 11 10 9 13 13 O 1.21229 * 127.34597 * 355.16433 * 12 11 10 14 14 C 1.50750 * 105.30789 * 175.18005 * 12 11 10 15 15 H 1.09003 * 112.59552 * 250.30938 * 14 12 11 16 16 C 1.54170 * 112.13794 * 122.07914 * 14 12 11 17 17 C 1.55101 * 102.20972 * 209.99928 * 16 14 12 18 18 H 1.09004 * 110.35807 * 141.13150 * 17 16 14 19 19 O 1.42898 * 110.35612 * 263.31289 * 17 16 14 20 20 C 1.54491 * 104.99135 * 22.22285 * 17 16 14 21 21 N 1.46972 * 106.28163 * 3.42827 * 20 17 16 22 22 C 1.34217 * 124.25889 * 264.51800 * 11 10 9 23 23 O 1.21543 * 124.04729 * 353.46720 * 22 11 10 24 24 C 1.53007 * 117.51514 * 239.86008 * 9 7 2 25 25 C 1.53001 * 59.99949 * 107.47879 * 24 9 7 26 26 H 0.97006 * 119.99937 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47065 * 279.92218 * 10 9 7 28 28 H 1.09003 * 109.47250 * 159.92526 * 10 9 7 29 29 H 1.09000 * 110.85940 * 91.82187 * 16 14 12 30 30 H 1.08995 * 110.85989 * 328.18171 * 16 14 12 31 31 H 0.96704 * 114.00039 * 178.49523 * 19 17 16 32 32 H 1.08995 * 110.07074 * 122.70057 * 20 17 16 33 33 H 1.09004 * 110.06814 * 244.23606 * 20 17 16 34 34 H 1.09002 * 117.49559 * 214.97126 * 24 9 7 35 35 H 1.09003 * 117.49919 * 359.97438 * 24 9 7 36 36 H 1.09000 * 117.49774 * 252.50700 * 25 24 9 37 37 H 1.09003 * 117.51378 * 107.48291 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3977 2.1035 -1.3954 5 1 1.4996 2.6220 0.7967 6 1 3.5928 1.4135 0.5987 7 6 2.0045 -1.1941 0.0005 8 1 1.4685 -2.1271 0.0942 9 6 3.5059 -1.1974 -0.1294 10 6 4.2823 -1.2297 1.1885 11 7 3.6137 -2.1343 2.1272 12 6 3.8036 -3.4721 2.1605 13 8 4.4681 -4.1398 1.3976 14 6 3.0124 -3.9569 3.3487 15 1 3.6492 -4.2882 4.1690 16 6 1.9582 -5.0103 2.9540 17 6 0.8473 -4.7744 4.0103 18 1 -0.1375 -4.8733 3.5535 19 8 0.9868 -5.6965 5.0930 20 6 1.0671 -3.3275 4.5051 21 7 2.1722 -2.7817 3.7046 22 6 2.7359 -1.7388 3.0623 23 8 2.4834 -0.5760 3.3103 24 6 4.1104 -1.9384 -1.3238 25 6 4.1163 -0.4088 -1.2898 26 1 -0.4850 0.8401 -0.0004 27 1 4.3182 -0.2267 1.6137 28 1 5.2969 -1.5826 1.0040 29 1 2.3659 -6.0177 3.0381 30 1 1.5825 -4.8254 1.9477 31 1 0.3322 -5.5805 5.7953 32 1 0.1638 -2.7377 4.3498 33 1 1.3357 -3.3302 5.5615 34 1 5.0612 -2.4489 -1.1705 35 1 3.4221 -2.4240 -2.0156 36 1 3.4319 0.1121 -1.9594 37 1 5.0708 0.0873 -1.1141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348674253.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:16 Heat of formation + Delta-G solvation = -33.702034 kcal Electronic energy + Delta-G solvation = -23368.557139 eV Core-core repulsion = 19920.906883 eV Total energy + Delta-G solvation = -3447.650256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.98372 -38.45449 -37.88786 -36.92985 -35.67493 -34.34955 -32.05878 -30.54167 -29.64286 -26.53021 -25.33137 -24.82858 -21.74761 -21.55683 -21.18017 -20.00159 -18.99176 -17.87815 -16.83073 -16.71898 -16.00512 -15.80269 -15.39040 -14.95088 -14.65242 -14.26198 -14.16225 -13.70240 -13.54645 -13.11398 -13.01254 -12.74158 -12.48919 -12.16845 -12.03378 -11.82159 -11.11934 -10.99084 -10.67544 -10.58049 -10.51003 -10.31347 -10.07438 -9.73719 -9.65465 -9.06402 -8.99285 -8.67070 -8.50860 -8.43754 -6.10427 -4.13568 2.14113 2.40062 3.33372 3.45763 3.47090 3.52889 3.59765 3.91871 4.27372 4.46175 4.47553 4.70251 4.88923 4.99564 5.09176 5.12075 5.22536 5.47622 5.63428 5.66283 5.72045 5.81023 5.89416 6.02979 6.04067 6.06359 6.23400 6.44909 6.49059 6.72237 6.98414 7.07325 7.14956 7.39194 7.71436 7.81106 7.91913 8.47102 8.71334 8.88721 9.54679 11.01222 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.007457 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.170265 B = 3753.761038 C = 4338.563127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.088 3.912 3 Si 0.889 3.111 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.260 1.260 7 C -0.486 4.486 8 H 0.070 0.930 9 C -0.020 4.020 10 C 0.151 3.849 11 N -0.545 5.545 12 C 0.530 3.470 13 O -0.477 6.477 14 C 0.045 3.955 15 H 0.129 0.871 16 C -0.104 4.104 17 C 0.087 3.913 18 H 0.084 0.916 19 O -0.558 6.558 20 C 0.136 3.864 21 N -0.643 5.643 22 C 0.752 3.248 23 O -0.523 6.523 24 C -0.172 4.172 25 C -0.195 4.195 26 H 0.264 0.736 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.381 0.619 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 -8.817 9.278 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.116 4.116 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.184 1.184 7 C -0.523 4.523 8 H 0.088 0.912 9 C -0.022 4.022 10 C 0.030 3.970 11 N -0.288 5.288 12 C 0.317 3.683 13 O -0.348 6.348 14 C -0.065 4.065 15 H 0.147 0.853 16 C -0.143 4.143 17 C 0.027 3.973 18 H 0.101 0.899 19 O -0.364 6.364 20 C 0.015 3.985 21 N -0.387 5.387 22 C 0.456 3.544 23 O -0.393 6.393 24 C -0.209 4.209 25 C -0.232 4.232 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.229 0.771 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.054 -8.301 8.700 12.690 hybrid contribution -0.242 1.250 0.212 1.291 sum 3.812 -7.051 8.913 11.987 Atomic orbital electron populations 1.69882 1.06474 1.27135 1.49503 1.24918 0.94537 0.99071 0.93054 0.86714 0.80875 0.83389 0.77258 1.21034 1.22198 1.18405 1.19988 0.86204 0.94234 1.51830 0.91165 1.19741 0.95961 1.00844 0.85657 1.21523 0.93338 0.92649 0.89502 1.46215 1.41616 1.09232 1.31726 1.20547 0.80517 0.82259 0.85007 1.90720 1.39471 1.61006 1.43573 1.23254 0.95215 0.90859 0.97165 0.85326 1.22470 0.93698 0.99297 0.98794 1.23063 0.99525 0.86965 0.87700 0.89860 1.86554 1.59246 1.57202 1.33405 1.22573 0.88523 0.93444 0.93973 1.48553 1.27256 1.07482 1.55360 1.14945 0.78424 0.83319 0.77692 1.90914 1.64909 1.16705 1.66808 1.22895 1.01043 0.93058 1.03941 1.22919 1.01164 0.94602 1.04564 0.92646 0.89197 0.90984 0.88195 0.88434 0.77139 0.89372 0.90255 0.90635 0.89598 0.89208 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 2 C 0.09 2.54 5.46 -17.82 -0.10 2.45 16 3 Si 0.89 22.89 24.87 -169.99 -4.23 18.66 16 4 H -0.28 -7.05 7.09 56.52 0.40 -6.65 16 5 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.26 -6.34 5.56 56.52 0.31 -6.02 16 7 C -0.49 -13.48 8.26 -34.44 -0.28 -13.76 16 8 H 0.07 2.15 8.06 -52.48 -0.42 1.73 16 9 C -0.02 -0.48 1.23 -155.66 -0.19 -0.67 16 10 C 0.15 3.20 5.75 -4.04 -0.02 3.18 16 11 N -0.55 -11.27 2.15 -120.74 -0.26 -11.53 16 12 C 0.53 9.76 7.67 -10.79 -0.08 9.68 16 13 O -0.48 -9.49 17.87 5.60 0.10 -9.39 16 14 C 0.04 0.65 3.98 -67.18 -0.27 0.38 16 15 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 16 C -0.10 -1.33 6.33 -25.01 -0.16 -1.49 16 17 C 0.09 0.91 4.38 -24.84 -0.11 0.81 16 18 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 19 O -0.56 -4.92 13.28 -35.23 -0.47 -5.39 16 20 C 0.14 1.66 7.44 -3.00 -0.02 1.64 16 21 N -0.64 -10.90 4.17 -169.50 -0.71 -11.60 16 22 C 0.75 16.14 7.93 -87.38 -0.69 15.45 16 23 O -0.52 -13.16 17.43 5.33 0.09 -13.07 16 24 C -0.17 -3.62 9.88 -26.73 -0.26 -3.89 16 25 C -0.19 -4.17 7.40 -26.73 -0.20 -4.37 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.09 1.98 6.42 -51.93 -0.33 1.65 16 28 H 0.07 1.34 7.95 -51.93 -0.41 0.93 16 29 H 0.10 1.13 8.09 -51.93 -0.42 0.71 16 30 H 0.10 1.43 8.02 -51.93 -0.42 1.01 16 31 H 0.38 1.62 9.12 45.56 0.42 2.04 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 0.78 7.98 -51.93 -0.41 0.37 16 34 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16 35 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 36 H 0.09 2.04 6.77 -51.93 -0.35 1.68 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 308.70 15.07 4.65 4.65 Total: -1.00 -35.26 308.70 -6.55 -41.81 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.11 Total: 3.03 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -2.39 Total: 9.41 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.19 Total: -49.71 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.27 Total: -27.85 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.23 Total: 18.66 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.26 -6.55 -41.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348674253.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.108 kcal (2) G-P(sol) polarization free energy of solvation -35.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds