Wall clock time and date at job start Tue Mar 31 2020 01:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 120.00066 * 2 1 4 4 H 1.48502 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47042 * 299.99533 * 3 2 1 6 6 H 1.48500 * 109.47015 * 59.99636 * 3 2 1 7 7 C 1.37876 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99971 * 169.38419 * 7 2 1 9 9 C 1.50703 * 120.00278 * 349.39201 * 7 2 1 10 10 C 1.53000 * 115.54902 * 294.39157 * 9 7 2 11 11 N 1.46500 * 109.46853 * 280.59400 * 10 9 7 12 12 C 1.35057 * 124.18501 * 84.23928 * 11 10 9 13 13 O 1.21229 * 127.19797 * 3.15753 * 12 11 10 14 14 C 1.51143 * 105.61147 * 183.11818 * 12 11 10 15 15 H 1.09007 * 111.67525 * 112.91028 * 14 12 11 16 16 C 1.53267 * 111.09341 * 238.20972 * 14 12 11 17 17 O 1.43196 * 108.38152 * 162.49989 * 16 14 12 18 18 C 1.42790 * 115.50378 * 295.41196 * 17 16 14 19 19 C 1.53852 * 109.69004 * 63.11505 * 18 17 16 20 20 N 1.46591 * 106.77108 * 311.64233 * 19 18 17 21 21 C 1.33251 * 130.39601 * 231.81669 * 20 19 18 22 22 O 1.21534 * 124.04202 * 347.08610 * 21 20 19 23 23 C 1.53002 * 117.51949 * 80.08986 * 9 7 2 24 24 C 1.52995 * 117.50005 * 148.72093 * 9 7 2 25 25 H 0.97002 * 119.99559 * 5.02847 * 1 2 3 26 26 H 1.09000 * 109.47522 * 160.59081 * 10 9 7 27 27 H 1.09000 * 109.47299 * 40.58635 * 10 9 7 28 28 H 1.08998 * 109.68196 * 282.22269 * 16 14 12 29 29 H 1.08996 * 109.68351 * 42.77989 * 16 14 12 30 30 H 1.08999 * 109.43326 * 183.18103 * 18 17 16 31 31 H 1.08997 * 109.43601 * 303.09196 * 18 17 16 32 32 H 1.09003 * 109.99066 * 70.95672 * 19 18 17 33 33 H 1.09005 * 109.99202 * 192.32739 * 19 18 17 34 34 H 1.09002 * 117.49978 * 214.97267 * 23 9 7 35 35 H 1.09003 * 117.49621 * 359.97438 * 23 9 7 36 36 H 1.08997 * 117.49840 * 359.97182 * 24 9 7 37 37 H 1.08997 * 117.49866 * 144.99734 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0706 -1.2022 -0.1718 9 6 1.2703 -2.4879 0.2414 10 6 0.6598 -2.6507 1.6348 11 7 1.7047 -3.0457 2.5826 12 6 2.5301 -2.1781 3.2072 13 8 2.5121 -0.9681 3.1349 14 6 3.4803 -3.0310 4.0159 15 1 4.5002 -2.9681 3.6363 16 6 3.4096 -2.6753 5.5050 17 8 3.9906 -3.7487 6.2538 18 6 3.2992 -4.9958 6.1782 19 6 3.3129 -5.5091 4.7279 20 7 2.9018 -4.3874 3.8783 21 6 1.9565 -4.3145 2.9421 22 8 1.3922 -5.2810 2.4682 23 6 0.5123 -3.1007 -0.9380 24 6 1.8096 -3.7446 -0.4448 25 1 -0.4849 0.8369 -0.0736 26 1 -0.1133 -3.4186 1.6054 27 1 0.2205 -1.7048 1.9518 28 1 3.9654 -1.7560 5.6896 29 1 2.3693 -2.5418 5.8016 30 1 3.7907 -5.7227 6.8249 31 1 2.2682 -4.8591 6.5042 32 1 4.3177 -5.8332 4.4568 33 1 2.6113 -6.3361 4.6186 34 1 -0.4214 -3.6198 -0.7211 35 1 0.5442 -2.5678 -1.8883 36 1 2.6952 -3.6354 -1.0708 37 1 1.7295 -4.6872 0.0965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348718412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:25 Heat of formation + Delta-G solvation = -41.416514 kcal Electronic energy + Delta-G solvation = -23292.069320 eV Core-core repulsion = 19844.084539 eV Total energy + Delta-G solvation = -3447.984780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.14133 -38.73371 -38.05078 -36.59664 -35.45981 -33.95374 -31.97141 -31.81092 -28.24346 -27.06467 -25.48035 -24.23695 -23.22595 -21.26945 -20.99024 -20.21808 -19.01223 -17.28302 -17.02256 -16.46036 -16.30979 -15.92343 -15.44580 -15.34275 -14.67454 -14.50159 -14.45481 -13.92034 -13.67790 -13.48298 -13.26560 -12.79697 -12.46809 -11.79730 -11.68319 -11.41929 -11.15929 -10.95050 -10.85280 -10.54380 -10.52914 -10.43760 -10.11052 -9.94390 -9.56545 -8.95605 -8.90345 -8.68370 -8.44841 -8.14140 -6.03060 -4.05875 2.15067 2.36515 3.26379 3.34337 3.42453 3.43157 3.47008 3.55816 4.31752 4.43784 4.46062 4.56525 4.74783 4.93962 5.03516 5.20644 5.27321 5.40338 5.43434 5.48513 5.58803 5.78764 6.08002 6.19392 6.28595 6.40284 6.59611 6.71158 6.77822 6.80482 6.95774 7.06276 7.30432 7.48078 7.67494 7.90634 7.97385 8.40901 8.53156 8.90900 9.59366 11.05330 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.006927 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.845617 B = 4041.314014 C = 4986.882538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.081 3.919 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.281 1.281 7 C -0.488 4.488 8 H 0.056 0.944 9 C 0.027 3.973 10 C 0.162 3.838 11 N -0.559 5.559 12 C 0.527 3.473 13 O -0.440 6.440 14 C 0.050 3.950 15 H 0.134 0.866 16 C 0.072 3.928 17 O -0.375 6.375 18 C 0.044 3.956 19 C 0.119 3.881 20 N -0.633 5.633 21 C 0.709 3.291 22 O -0.548 6.548 23 C -0.160 4.160 24 C -0.206 4.206 25 H 0.261 0.739 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.747 -8.410 12.283 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.123 4.123 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.525 4.525 8 H 0.074 0.926 9 C 0.026 3.974 10 C 0.042 3.958 11 N -0.303 5.303 12 C 0.311 3.689 13 O -0.306 6.306 14 C -0.058 4.058 15 H 0.151 0.849 16 C -0.006 4.006 17 O -0.293 6.293 18 C -0.034 4.034 19 C -0.003 4.003 20 N -0.374 5.374 21 C 0.412 3.588 22 O -0.423 6.423 23 C -0.198 4.198 24 C -0.244 4.244 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.377 -8.200 12.138 15.604 hybrid contribution 0.222 0.806 -0.424 0.937 sum 5.598 -7.394 11.714 14.941 Atomic orbital electron populations 1.69970 1.05964 1.26791 1.48991 1.24865 0.94677 0.98855 0.93864 0.86541 0.80389 0.83799 0.77300 1.19834 1.21436 1.20685 1.20323 0.93630 0.88764 1.49822 0.92595 1.19156 0.98443 0.91736 0.88041 1.21465 0.85684 1.00491 0.88152 1.46669 1.35219 1.06564 1.41896 1.20226 0.81316 0.87469 0.79840 1.90826 1.68581 1.10952 1.60274 1.23124 1.00510 0.83227 0.98950 0.84863 1.22799 1.00135 0.90782 0.86851 1.87879 1.53000 1.18950 1.69469 1.23180 0.98010 0.86485 0.95732 1.22185 1.01824 0.87760 0.88522 1.47467 1.39081 1.10919 1.39946 1.15604 0.79857 0.83814 0.79564 1.90917 1.55388 1.37452 1.58515 1.22681 0.92890 1.03495 1.00732 1.22928 0.97774 0.97493 1.06165 0.92976 0.91520 0.87888 0.86238 0.91802 0.87096 0.92380 0.89966 0.87955 0.91696 0.89962 0.90844 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.75 12.72 55.43 0.70 -24.05 16 2 C 0.08 2.23 5.23 -17.82 -0.09 2.14 16 3 Si 0.89 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.49 -13.34 8.61 -34.44 -0.30 -13.64 16 8 H 0.06 1.57 7.84 -52.49 -0.41 1.16 16 9 C 0.03 0.68 1.47 -155.66 -0.23 0.45 16 10 C 0.16 3.73 5.54 -4.04 -0.02 3.71 16 11 N -0.56 -11.36 2.60 -121.06 -0.31 -11.67 16 12 C 0.53 10.02 7.60 -10.64 -0.08 9.94 16 13 O -0.44 -9.76 17.64 5.60 0.10 -9.66 16 14 C 0.05 0.70 4.13 -67.85 -0.28 0.42 16 15 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 16 C 0.07 0.82 6.47 37.30 0.24 1.06 16 17 O -0.38 -4.02 10.63 -35.23 -0.37 -4.40 16 18 C 0.04 0.37 7.01 37.60 0.26 0.63 16 19 C 0.12 1.20 7.25 -3.55 -0.03 1.17 16 20 N -0.63 -9.13 3.06 -171.54 -0.52 -9.65 16 21 C 0.71 13.23 8.32 -88.74 -0.74 12.49 16 22 O -0.55 -11.53 16.29 5.34 0.09 -11.44 16 23 C -0.16 -3.79 9.88 -26.73 -0.26 -4.06 16 24 C -0.21 -4.74 9.93 -26.73 -0.27 -5.01 16 25 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 26 H 0.07 1.49 7.60 -51.93 -0.39 1.10 16 27 H 0.10 2.60 7.34 -51.93 -0.38 2.22 16 28 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 34 H 0.06 1.46 8.09 -51.93 -0.42 1.04 16 35 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 36 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 37 H 0.07 1.71 7.04 -51.93 -0.37 1.35 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -32.17 314.60 -7.30 -39.47 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.91 Total: 0.37 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -1.79 Total: 9.32 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.13 Total: -45.38 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.19 Total: -25.50 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.17 -7.30 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348718412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.942 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds