Wall clock time and date at job start Tue Mar 31 2020 01:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 120.00066 * 2 1 4 4 H 1.48502 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47042 * 299.99533 * 3 2 1 6 6 H 1.48500 * 109.47015 * 59.99636 * 3 2 1 7 7 C 1.37876 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99971 * 169.38419 * 7 2 1 9 9 C 1.50703 * 120.00278 * 349.39201 * 7 2 1 10 10 C 1.53000 * 115.54902 * 294.39157 * 9 7 2 11 11 N 1.46500 * 109.46853 * 280.59400 * 10 9 7 12 12 C 1.35057 * 124.18501 * 84.23928 * 11 10 9 13 13 O 1.21229 * 127.19797 * 3.15753 * 12 11 10 14 14 C 1.51143 * 105.61147 * 183.11818 * 12 11 10 15 15 H 1.09007 * 111.67525 * 112.91028 * 14 12 11 16 16 C 1.53267 * 111.09341 * 238.20972 * 14 12 11 17 17 O 1.43196 * 108.38152 * 162.49989 * 16 14 12 18 18 C 1.42790 * 115.50378 * 295.41196 * 17 16 14 19 19 C 1.53852 * 109.69004 * 63.11505 * 18 17 16 20 20 N 1.46591 * 106.77108 * 311.64233 * 19 18 17 21 21 C 1.33251 * 130.39601 * 231.81669 * 20 19 18 22 22 O 1.21534 * 124.04202 * 347.08610 * 21 20 19 23 23 C 1.53002 * 117.51949 * 80.08986 * 9 7 2 24 24 C 1.52995 * 117.50005 * 148.72093 * 9 7 2 25 25 H 0.97002 * 119.99559 * 5.02847 * 1 2 3 26 26 H 1.09000 * 109.47522 * 160.59081 * 10 9 7 27 27 H 1.09000 * 109.47299 * 40.58635 * 10 9 7 28 28 H 1.08998 * 109.68196 * 282.22269 * 16 14 12 29 29 H 1.08996 * 109.68351 * 42.77989 * 16 14 12 30 30 H 1.08999 * 109.43326 * 183.18103 * 18 17 16 31 31 H 1.08997 * 109.43601 * 303.09196 * 18 17 16 32 32 H 1.09003 * 109.99066 * 70.95672 * 19 18 17 33 33 H 1.09005 * 109.99202 * 192.32739 * 19 18 17 34 34 H 1.09002 * 117.49978 * 214.97267 * 23 9 7 35 35 H 1.09003 * 117.49621 * 359.97438 * 23 9 7 36 36 H 1.08997 * 117.49840 * 359.97182 * 24 9 7 37 37 H 1.08997 * 117.49866 * 144.99734 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0706 -1.2022 -0.1718 9 6 1.2703 -2.4879 0.2414 10 6 0.6598 -2.6507 1.6348 11 7 1.7047 -3.0457 2.5826 12 6 2.5301 -2.1781 3.2072 13 8 2.5121 -0.9681 3.1349 14 6 3.4803 -3.0310 4.0159 15 1 4.5002 -2.9681 3.6363 16 6 3.4096 -2.6753 5.5050 17 8 3.9906 -3.7487 6.2538 18 6 3.2992 -4.9958 6.1782 19 6 3.3129 -5.5091 4.7279 20 7 2.9018 -4.3874 3.8783 21 6 1.9565 -4.3145 2.9421 22 8 1.3922 -5.2810 2.4682 23 6 0.5123 -3.1007 -0.9380 24 6 1.8096 -3.7446 -0.4448 25 1 -0.4849 0.8369 -0.0736 26 1 -0.1133 -3.4186 1.6054 27 1 0.2205 -1.7048 1.9518 28 1 3.9654 -1.7560 5.6896 29 1 2.3693 -2.5418 5.8016 30 1 3.7907 -5.7227 6.8249 31 1 2.2682 -4.8591 6.5042 32 1 4.3177 -5.8332 4.4568 33 1 2.6113 -6.3361 4.6186 34 1 -0.4214 -3.6198 -0.7211 35 1 0.5442 -2.5678 -1.8883 36 1 2.6952 -3.6354 -1.0708 37 1 1.7295 -4.6872 0.0965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348718412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:23 Heat of formation + Delta-G solvation = -62.641265 kcal Electronic energy + Delta-G solvation = -23292.989694 eV Core-core repulsion = 19844.084539 eV Total energy + Delta-G solvation = -3448.905155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -43.52122 -39.80578 -39.56729 -38.38535 -36.89158 -35.30059 -34.06994 -32.82816 -29.46446 -28.52430 -27.47935 -25.47172 -24.39667 -23.04934 -22.37890 -21.61438 -20.81396 -18.65801 -18.44508 -18.03092 -17.44401 -17.21429 -16.75877 -16.61906 -16.45200 -15.87179 -15.83636 -15.43311 -15.18008 -14.93719 -14.80091 -14.23353 -13.72055 -13.37396 -13.31704 -12.98858 -12.82252 -12.54977 -12.41243 -12.26655 -12.07438 -11.88289 -11.75462 -11.43345 -11.09249 -10.88979 -10.66185 -10.39702 -10.13275 -9.86143 -8.14420 -6.21198 0.69427 1.07770 1.35497 1.42148 1.49002 1.93295 2.06049 2.41251 2.59731 3.10419 3.13999 3.39230 3.46816 3.65159 3.89102 4.07223 4.16523 4.18868 4.31922 4.45981 4.49614 4.50800 4.58100 4.70926 4.77938 4.83885 4.89455 4.93237 5.09932 5.15286 5.39763 5.47416 5.55627 5.75809 5.98340 6.16850 6.34364 6.51270 6.77480 7.06751 7.45506 8.93873 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.006927 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.845617 B = 4041.314014 C = 4986.882538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.044 3.956 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.284 1.284 7 C -0.496 4.496 8 H 0.041 0.959 9 C 0.007 3.993 10 C 0.175 3.825 11 N -0.571 5.571 12 C 0.518 3.482 13 O -0.481 6.481 14 C 0.062 3.938 15 H 0.156 0.844 16 C 0.080 3.920 17 O -0.376 6.376 18 C 0.044 3.956 19 C 0.110 3.890 20 N -0.621 5.621 21 C 0.704 3.296 22 O -0.577 6.577 23 C -0.160 4.160 24 C -0.185 4.185 25 H 0.262 0.738 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.137 0.863 29 H 0.060 0.940 30 H 0.149 0.851 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.320 -9.446 13.857 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.158 4.158 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.210 1.210 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.006 3.994 10 C 0.054 3.946 11 N -0.315 5.315 12 C 0.306 3.694 13 O -0.350 6.350 14 C -0.045 4.045 15 H 0.173 0.827 16 C 0.002 3.998 17 O -0.293 6.293 18 C -0.032 4.032 19 C -0.009 4.009 20 N -0.360 5.360 21 C 0.407 3.593 22 O -0.454 6.454 23 C -0.198 4.198 24 C -0.222 4.222 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.155 0.845 29 H 0.078 0.922 30 H 0.166 0.834 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.991 -9.270 13.750 17.997 hybrid contribution -0.252 1.051 -0.882 1.395 sum 6.739 -8.219 12.868 16.690 Atomic orbital electron populations 1.70036 1.06806 1.27348 1.49780 1.25402 0.95333 1.01215 0.93822 0.85795 0.79365 0.80941 0.77302 1.19766 1.20430 1.21036 1.20416 0.93025 0.90154 1.49720 0.94058 1.19226 0.99359 0.91657 0.89161 1.20985 0.86503 0.99151 0.87925 1.46689 1.35106 1.07930 1.41754 1.21025 0.81463 0.87298 0.79651 1.90791 1.69716 1.12729 1.61777 1.23217 0.99625 0.81652 1.00052 0.82652 1.22782 1.00480 0.91878 0.84636 1.87903 1.53218 1.19400 1.68800 1.23401 0.98618 0.86239 0.94987 1.22648 1.02984 0.86607 0.88664 1.47674 1.37344 1.12206 1.38819 1.15668 0.80601 0.82730 0.80272 1.90889 1.56794 1.37944 1.59784 1.22642 0.93840 1.03521 0.99815 1.22820 0.97313 0.96815 1.05225 0.92905 0.91389 0.90731 0.84547 0.92193 0.83359 0.92348 0.87790 0.87415 0.90549 0.91151 0.90664 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.56 12.72 21.45 0.27 -51.29 16 2 C 0.04 2.43 5.23 84.65 0.44 2.87 16 3 Si 0.94 45.48 29.55 68.60 2.03 47.51 16 4 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.50 -27.49 8.61 25.60 0.22 -27.27 16 8 H 0.04 2.36 7.84 -2.91 -0.02 2.33 16 9 C 0.01 0.36 1.47 -52.93 -0.08 0.28 16 10 C 0.18 8.28 5.54 86.38 0.48 8.76 16 11 N -0.57 -23.25 2.60 -773.76 -2.01 -25.26 16 12 C 0.52 19.62 7.60 87.75 0.67 20.29 16 13 O -0.48 -21.64 17.64 -2.87 -0.05 -21.69 16 14 C 0.06 1.61 4.13 44.17 0.18 1.79 16 15 H 0.16 3.46 8.14 -2.38 -0.02 3.45 16 16 C 0.08 1.61 6.47 72.07 0.47 2.08 16 17 O -0.38 -6.60 10.63 -148.98 -1.58 -8.18 16 18 C 0.04 0.57 7.01 72.27 0.51 1.08 16 19 C 0.11 1.85 7.25 86.65 0.63 2.48 16 20 N -0.62 -16.52 3.06 -815.75 -2.49 -19.01 16 21 C 0.70 25.67 8.32 179.69 1.49 27.17 16 22 O -0.58 -23.88 16.29 -3.82 -0.06 -23.94 16 23 C -0.16 -7.63 9.88 30.60 0.30 -7.33 16 24 C -0.18 -8.43 9.93 30.59 0.30 -8.13 16 25 H 0.26 14.31 8.32 -92.71 -0.77 13.54 16 26 H 0.07 3.11 7.60 -2.39 -0.02 3.09 16 27 H 0.07 3.92 7.34 -2.39 -0.02 3.90 16 28 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 1.27 8.07 -2.39 -0.02 1.25 16 30 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 1.75 8.09 -2.38 -0.02 1.73 16 34 H 0.08 3.43 8.09 -2.39 -0.02 3.41 16 35 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 36 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 37 H 0.08 3.60 7.04 -2.39 -0.02 3.58 16 Total: -1.00 -69.93 314.60 2.80 -67.13 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.08 Total: 10.66 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 5.61 Total: 24.07 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -4.23 Total: -95.56 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -1.70 Total: -53.81 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -69.93 2.80 -67.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348718412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.491 kcal (2) G-P(sol) polarization free energy of solvation -69.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds