Wall clock time and date at job start Tue Mar 31 2020 01:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99631 * 2 1 4 4 H 1.48509 * 109.46997 * 244.31313 * 3 2 1 5 5 H 1.48490 * 109.47523 * 4.31524 * 3 2 1 6 6 H 1.48498 * 109.46875 * 124.31822 * 3 2 1 7 7 C 1.37870 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00396 * 173.15975 * 7 2 1 9 9 C 1.50698 * 120.00046 * 353.15628 * 7 2 1 10 10 C 1.53001 * 115.55019 * 295.25988 * 9 7 2 11 11 N 1.46501 * 109.47040 * 279.52807 * 10 9 7 12 12 C 1.35059 * 124.18169 * 84.87512 * 11 10 9 13 13 O 1.21237 * 127.19333 * 356.88091 * 12 11 10 14 14 C 1.51141 * 105.61534 * 176.89999 * 12 11 10 15 15 H 1.08997 * 111.67979 * 248.13680 * 14 12 11 16 16 C 1.53259 * 111.08804 * 121.75709 * 14 12 11 17 17 O 1.43195 * 108.38798 * 197.50888 * 16 14 12 18 18 C 1.42795 * 115.51389 * 64.57059 * 17 16 14 19 19 C 1.53855 * 109.68780 * 296.90390 * 18 17 16 20 20 N 1.46582 * 106.76547 * 48.36795 * 19 18 17 21 21 C 1.33325 * 130.50433 * 128.79187 * 20 19 18 22 22 O 1.21541 * 124.08473 * 12.85583 * 21 20 19 23 23 C 1.53002 * 117.51641 * 80.95676 * 9 7 2 24 24 C 1.53002 * 117.49939 * 149.58675 * 9 7 2 25 25 H 0.97003 * 120.00015 * 4.90000 * 1 2 3 26 26 H 1.09004 * 109.47242 * 159.52840 * 10 9 7 27 27 H 1.08997 * 109.47046 * 39.53055 * 10 9 7 28 28 H 1.09004 * 109.68640 * 317.23211 * 16 14 12 29 29 H 1.08998 * 109.68129 * 77.78700 * 16 14 12 30 30 H 1.09001 * 109.43283 * 176.83129 * 18 17 16 31 31 H 1.09006 * 109.39418 * 56.94908 * 18 17 16 32 32 H 1.09003 * 109.98999 * 289.04779 * 19 18 17 33 33 H 1.09009 * 109.99087 * 167.67791 * 19 18 17 34 34 H 1.09004 * 117.50091 * 214.97200 * 23 9 7 35 35 H 1.08996 * 117.50022 * 359.97438 * 23 9 7 36 36 H 1.08996 * 117.49814 * 359.97438 * 24 9 7 37 37 H 1.09000 * 117.49631 * 144.97765 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.0221 1.7431 -1.2618 5 1 1.2876 2.7445 0.1053 6 1 3.1801 1.6519 1.1564 7 6 2.0045 -1.1940 -0.0005 8 1 3.0788 -1.1973 -0.1119 9 6 1.2591 -2.4945 0.1544 10 6 0.5533 -2.6946 1.4970 11 7 1.5260 -3.1378 2.4988 12 6 2.3098 -2.3041 3.2162 13 8 2.3782 -1.0975 3.1190 14 6 3.0842 -3.1895 4.1652 15 1 2.7817 -3.0319 5.2004 16 6 4.5946 -3.0234 3.9659 17 8 5.2553 -4.1427 4.5669 18 6 4.9804 -5.4113 3.9719 19 6 3.4853 -5.7416 4.1230 20 7 2.7441 -4.5520 3.6940 21 6 1.7445 -4.4225 2.8213 22 8 1.1098 -5.3553 2.3693 23 6 0.5872 -3.0768 -1.0907 24 6 1.8488 -3.7320 -0.5251 25 1 -0.4850 0.8370 -0.0718 26 1 -0.2262 -3.4489 1.3888 27 1 0.1061 -1.7533 1.8162 28 1 4.8231 -2.9910 2.9006 29 1 4.9285 -2.1013 4.4416 30 1 5.5736 -6.1802 4.4670 31 1 5.2396 -5.3786 2.9136 32 1 3.2570 -5.9676 5.1646 33 1 3.2255 -6.5907 3.4907 34 1 -0.3578 -3.6025 -0.9534 35 1 0.6838 -2.5190 -2.0222 36 1 2.7757 -3.6054 -1.0846 37 1 1.7342 -4.6887 -0.0155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348718413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:29 Heat of formation + Delta-G solvation = -41.359223 kcal Electronic energy + Delta-G solvation = -23432.206665 eV Core-core repulsion = 19984.224369 eV Total energy + Delta-G solvation = -3447.982296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.11546 -38.67699 -38.02751 -36.61065 -35.44046 -33.93079 -31.97926 -31.76195 -28.19509 -27.03428 -25.46407 -24.22583 -23.18872 -21.22505 -21.06370 -20.16783 -19.03225 -17.30053 -17.04175 -16.32991 -16.10469 -15.83742 -15.62868 -15.30989 -14.62852 -14.54324 -14.43949 -14.00792 -13.49738 -13.43996 -13.28467 -12.80805 -12.45126 -11.74364 -11.66635 -11.37270 -11.10594 -10.99001 -10.81275 -10.53313 -10.48497 -10.42374 -10.16440 -9.97112 -9.54887 -8.94556 -8.86925 -8.69938 -8.46756 -8.16384 -6.02646 -4.06452 2.15833 2.38048 3.29794 3.35846 3.39949 3.46501 3.47767 3.58614 4.35498 4.45877 4.47297 4.59711 4.81809 4.99838 5.06513 5.19691 5.32255 5.42338 5.45963 5.57032 5.63373 5.83122 6.05086 6.20067 6.29655 6.38452 6.60529 6.71893 6.74369 6.84995 6.96812 7.03626 7.29535 7.43528 7.69118 7.89874 7.99314 8.39507 8.54478 8.89787 9.59187 11.06080 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.007292 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.590860 B = 3838.705296 C = 4592.690322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.081 3.919 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.486 4.486 8 H 0.054 0.946 9 C 0.031 3.969 10 C 0.160 3.840 11 N -0.559 5.559 12 C 0.524 3.476 13 O -0.435 6.435 14 C 0.050 3.950 15 H 0.131 0.869 16 C 0.072 3.928 17 O -0.376 6.376 18 C 0.043 3.957 19 C 0.120 3.880 20 N -0.634 5.634 21 C 0.709 3.291 22 O -0.550 6.550 23 C -0.162 4.162 24 C -0.207 4.207 25 H 0.262 0.738 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.397 -8.963 9.636 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.122 4.122 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.523 4.523 8 H 0.073 0.927 9 C 0.030 3.970 10 C 0.041 3.959 11 N -0.304 5.304 12 C 0.308 3.692 13 O -0.301 6.301 14 C -0.058 4.058 15 H 0.148 0.852 16 C -0.006 4.006 17 O -0.294 6.294 18 C -0.034 4.034 19 C -0.002 4.002 20 N -0.375 5.375 21 C 0.412 3.588 22 O -0.425 6.425 23 C -0.201 4.201 24 C -0.244 4.244 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.124 0.876 28 H 0.088 0.912 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.993 -8.730 9.524 14.691 hybrid contribution 0.136 0.806 -0.345 0.888 sum 7.129 -7.923 9.179 14.066 Atomic orbital electron populations 1.69912 1.05934 1.27030 1.49142 1.24846 0.94705 0.98813 0.93862 0.86685 0.79947 0.83078 0.78568 1.20682 1.21338 1.19547 1.20244 0.92636 0.88504 1.50940 0.92737 1.19148 0.97810 0.91830 0.88186 1.21491 0.87526 1.00065 0.86861 1.46677 1.39006 1.06473 1.38209 1.20281 0.80280 0.87717 0.80954 1.90853 1.62658 1.11184 1.65422 1.23149 0.98641 0.83135 1.00877 0.85177 1.22784 0.87684 0.90177 0.99911 1.87863 1.68554 1.14795 1.58183 1.23177 0.94710 0.86275 0.99283 1.22172 0.90536 0.86262 1.01216 1.47509 1.36225 1.07473 1.46316 1.15626 0.80540 0.83626 0.78985 1.90916 1.51951 1.40927 1.58687 1.22710 0.93698 1.03450 1.00194 1.22889 0.97394 0.97250 1.06870 0.92851 0.91462 0.87605 0.91245 0.86330 0.87161 0.92194 0.90123 0.88004 0.91609 0.89979 0.90816 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 12.45 55.43 0.69 -24.05 16 2 C 0.08 2.22 5.26 -17.82 -0.09 2.13 16 3 Si 0.89 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.49 -13.15 8.45 -34.44 -0.29 -13.45 16 8 H 0.05 1.51 7.82 -52.48 -0.41 1.10 16 9 C 0.03 0.77 1.50 -155.66 -0.23 0.54 16 10 C 0.16 3.71 5.54 -4.04 -0.02 3.69 16 11 N -0.56 -11.40 2.58 -121.04 -0.31 -11.72 16 12 C 0.52 9.98 7.63 -10.64 -0.08 9.90 16 13 O -0.43 -9.73 17.47 5.59 0.10 -9.63 16 14 C 0.05 0.70 4.12 -67.84 -0.28 0.42 16 15 H 0.13 1.50 8.14 -51.93 -0.42 1.07 16 16 C 0.07 0.90 6.46 37.29 0.24 1.14 16 17 O -0.38 -4.31 10.63 -35.23 -0.37 -4.68 16 18 C 0.04 0.40 7.01 37.60 0.26 0.67 16 19 C 0.12 1.25 7.25 -3.55 -0.03 1.23 16 20 N -0.63 -9.26 3.06 -171.52 -0.52 -9.78 16 21 C 0.71 13.33 8.18 -88.68 -0.73 12.60 16 22 O -0.55 -11.65 16.64 5.33 0.09 -11.56 16 23 C -0.16 -3.81 9.88 -26.73 -0.26 -4.08 16 24 C -0.21 -4.67 9.91 -26.73 -0.26 -4.93 16 25 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 26 H 0.07 1.52 7.53 -51.93 -0.39 1.13 16 27 H 0.11 2.69 7.14 -51.93 -0.37 2.32 16 28 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 29 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.04 8.10 -51.92 -0.42 0.62 16 34 H 0.07 1.47 8.08 -51.93 -0.42 1.05 16 35 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 36 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.07 1.59 7.29 -51.93 -0.38 1.21 16 LS Contribution 314.23 15.07 4.74 4.74 Total: -1.00 -31.88 314.23 -7.30 -39.19 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.90 Total: 0.94 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -1.78 Total: 9.85 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.15 Total: -45.54 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.19 Total: -25.88 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.88 -7.30 -39.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348718413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.174 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds