Wall clock time and date at job start Tue Mar 31 2020 01:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99631 * 2 1 4 4 H 1.48509 * 109.46997 * 244.31313 * 3 2 1 5 5 H 1.48490 * 109.47523 * 4.31524 * 3 2 1 6 6 H 1.48498 * 109.46875 * 124.31822 * 3 2 1 7 7 C 1.37870 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00396 * 173.15975 * 7 2 1 9 9 C 1.50698 * 120.00046 * 353.15628 * 7 2 1 10 10 C 1.53001 * 115.55019 * 295.25988 * 9 7 2 11 11 N 1.46501 * 109.47040 * 279.52807 * 10 9 7 12 12 C 1.35059 * 124.18169 * 84.87512 * 11 10 9 13 13 O 1.21237 * 127.19333 * 356.88091 * 12 11 10 14 14 C 1.51141 * 105.61534 * 176.89999 * 12 11 10 15 15 H 1.08997 * 111.67979 * 248.13680 * 14 12 11 16 16 C 1.53259 * 111.08804 * 121.75709 * 14 12 11 17 17 O 1.43195 * 108.38798 * 197.50888 * 16 14 12 18 18 C 1.42795 * 115.51389 * 64.57059 * 17 16 14 19 19 C 1.53855 * 109.68780 * 296.90390 * 18 17 16 20 20 N 1.46582 * 106.76547 * 48.36795 * 19 18 17 21 21 C 1.33325 * 130.50433 * 128.79187 * 20 19 18 22 22 O 1.21541 * 124.08473 * 12.85583 * 21 20 19 23 23 C 1.53002 * 117.51641 * 80.95676 * 9 7 2 24 24 C 1.53002 * 117.49939 * 149.58675 * 9 7 2 25 25 H 0.97003 * 120.00015 * 4.90000 * 1 2 3 26 26 H 1.09004 * 109.47242 * 159.52840 * 10 9 7 27 27 H 1.08997 * 109.47046 * 39.53055 * 10 9 7 28 28 H 1.09004 * 109.68640 * 317.23211 * 16 14 12 29 29 H 1.08998 * 109.68129 * 77.78700 * 16 14 12 30 30 H 1.09001 * 109.43283 * 176.83129 * 18 17 16 31 31 H 1.09006 * 109.39418 * 56.94908 * 18 17 16 32 32 H 1.09003 * 109.98999 * 289.04779 * 19 18 17 33 33 H 1.09009 * 109.99087 * 167.67791 * 19 18 17 34 34 H 1.09004 * 117.50091 * 214.97200 * 23 9 7 35 35 H 1.08996 * 117.50022 * 359.97438 * 23 9 7 36 36 H 1.08996 * 117.49814 * 359.97438 * 24 9 7 37 37 H 1.09000 * 117.49631 * 144.97765 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.0221 1.7431 -1.2618 5 1 1.2876 2.7445 0.1053 6 1 3.1801 1.6519 1.1564 7 6 2.0045 -1.1940 -0.0005 8 1 3.0788 -1.1973 -0.1119 9 6 1.2591 -2.4945 0.1544 10 6 0.5533 -2.6946 1.4970 11 7 1.5260 -3.1378 2.4988 12 6 2.3098 -2.3041 3.2162 13 8 2.3782 -1.0975 3.1190 14 6 3.0842 -3.1895 4.1652 15 1 2.7817 -3.0319 5.2004 16 6 4.5946 -3.0234 3.9659 17 8 5.2553 -4.1427 4.5669 18 6 4.9804 -5.4113 3.9719 19 6 3.4853 -5.7416 4.1230 20 7 2.7441 -4.5520 3.6940 21 6 1.7445 -4.4225 2.8213 22 8 1.1098 -5.3553 2.3693 23 6 0.5872 -3.0768 -1.0907 24 6 1.8488 -3.7320 -0.5251 25 1 -0.4850 0.8370 -0.0718 26 1 -0.2262 -3.4489 1.3888 27 1 0.1061 -1.7533 1.8162 28 1 4.8231 -2.9910 2.9006 29 1 4.9285 -2.1013 4.4416 30 1 5.5736 -6.1802 4.4670 31 1 5.2396 -5.3786 2.9136 32 1 3.2570 -5.9676 5.1646 33 1 3.2255 -6.5907 3.4907 34 1 -0.3578 -3.6025 -0.9534 35 1 0.6838 -2.5190 -2.0222 36 1 2.7757 -3.6054 -1.0846 37 1 1.7342 -4.6887 -0.0155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348718413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:28 Heat of formation + Delta-G solvation = -62.397594 kcal Electronic energy + Delta-G solvation = -23433.118957 eV Core-core repulsion = 19984.224369 eV Total energy + Delta-G solvation = -3448.894588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.51086 -39.79568 -39.55662 -38.39691 -36.88868 -35.29302 -34.06540 -32.81684 -29.45028 -28.51150 -27.46062 -25.48837 -24.39290 -23.05178 -22.42643 -21.55142 -20.83247 -18.69729 -18.53669 -17.68353 -17.52832 -17.18652 -16.88081 -16.59523 -16.45938 -15.93852 -15.77464 -15.54481 -15.10203 -14.91024 -14.72856 -14.26427 -13.70783 -13.34408 -13.31221 -12.99976 -12.78768 -12.54517 -12.42231 -12.26893 -12.06739 -11.92262 -11.76381 -11.43606 -11.08046 -10.84413 -10.68700 -10.40606 -10.13556 -9.85836 -8.12553 -6.20318 0.69640 1.07253 1.37804 1.43024 1.49320 1.96972 2.05134 2.42757 2.59787 3.11206 3.16181 3.38353 3.45870 3.65742 3.89189 4.08224 4.16903 4.18981 4.31110 4.46582 4.49671 4.50645 4.58891 4.71836 4.77044 4.83505 4.86112 4.95178 5.10936 5.14297 5.39587 5.47656 5.53253 5.76090 5.97419 6.17431 6.34637 6.52728 6.77972 7.06998 7.46780 8.95614 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.007292 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.590860 B = 3838.705296 C = 4592.690322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.042 3.958 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.493 4.493 8 H 0.041 0.959 9 C 0.011 3.989 10 C 0.173 3.827 11 N -0.571 5.571 12 C 0.515 3.485 13 O -0.477 6.477 14 C 0.065 3.935 15 H 0.167 0.833 16 C 0.079 3.921 17 O -0.374 6.374 18 C 0.043 3.957 19 C 0.113 3.887 20 N -0.623 5.623 21 C 0.705 3.295 22 O -0.579 6.579 23 C -0.163 4.163 24 C -0.183 4.183 25 H 0.261 0.739 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.051 0.949 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.040 -10.132 11.157 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.159 4.159 3 Si 0.764 3.236 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.010 3.990 10 C 0.052 3.948 11 N -0.315 5.315 12 C 0.302 3.698 13 O -0.347 6.347 14 C -0.042 4.042 15 H 0.184 0.816 16 C 0.001 3.999 17 O -0.291 6.291 18 C -0.034 4.034 19 C -0.007 4.007 20 N -0.362 5.362 21 C 0.408 3.592 22 O -0.456 6.456 23 C -0.201 4.201 24 C -0.220 4.220 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.155 0.845 30 H 0.168 0.832 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.685 -9.936 11.073 17.227 hybrid contribution -0.348 1.088 -0.794 1.391 sum 8.337 -8.848 10.279 15.920 Atomic orbital electron populations 1.69994 1.06800 1.27464 1.50010 1.25402 0.95367 1.01245 0.93843 0.85924 0.78951 0.80279 0.78449 1.19842 1.20845 1.20115 1.20361 0.92122 0.89858 1.50686 0.94037 1.19201 0.98792 0.91845 0.89194 1.21011 0.88097 0.98681 0.86969 1.46700 1.38946 1.07814 1.38042 1.21094 0.79990 0.87617 0.81085 1.90818 1.63975 1.13070 1.66794 1.23270 0.98936 0.81213 1.00820 0.81599 1.22731 0.86320 0.91657 0.99212 1.87891 1.68086 1.15109 1.58054 1.23404 0.94314 0.86252 0.99449 1.22626 0.90571 0.84672 1.02826 1.47720 1.34823 1.09024 1.44674 1.15684 0.81342 0.82535 0.79632 1.90889 1.53246 1.41391 1.60111 1.22679 0.94671 1.03508 0.99285 1.22780 0.96988 0.96556 1.05725 0.92940 0.91529 0.90504 0.93147 0.84547 0.83206 0.93040 0.87194 0.87676 0.90579 0.91036 0.90504 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.64 12.45 21.44 0.27 -51.37 16 2 C 0.04 2.36 5.26 84.65 0.45 2.80 16 3 Si 0.94 45.03 29.55 68.60 2.03 47.06 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.49 -27.13 8.45 25.60 0.22 -26.91 16 8 H 0.04 2.34 7.82 -2.91 -0.02 2.31 16 9 C 0.01 0.54 1.50 -52.93 -0.08 0.46 16 10 C 0.17 8.24 5.54 86.38 0.48 8.71 16 11 N -0.57 -23.35 2.58 -773.68 -2.00 -25.35 16 12 C 0.52 19.52 7.63 87.75 0.67 20.19 16 13 O -0.48 -21.69 17.47 -2.90 -0.05 -21.74 16 14 C 0.06 1.66 4.12 44.16 0.18 1.85 16 15 H 0.17 3.20 8.14 -2.39 -0.02 3.18 16 16 C 0.08 1.77 6.46 72.07 0.47 2.24 16 17 O -0.37 -7.14 10.63 -148.98 -1.58 -8.72 16 18 C 0.04 0.63 7.01 72.27 0.51 1.14 16 19 C 0.11 1.94 7.25 86.65 0.63 2.57 16 20 N -0.62 -16.70 3.06 -815.64 -2.49 -19.20 16 21 C 0.71 25.85 8.18 179.67 1.47 27.32 16 22 O -0.58 -24.13 16.64 -3.85 -0.06 -24.20 16 23 C -0.16 -7.72 9.88 30.60 0.30 -7.41 16 24 C -0.18 -8.24 9.91 30.60 0.30 -7.93 16 25 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 26 H 0.07 3.09 7.53 -2.38 -0.02 3.07 16 27 H 0.08 4.07 7.14 -2.39 -0.02 4.05 16 28 H 0.05 1.34 8.07 -2.38 -0.02 1.32 16 29 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.86 16 32 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.10 1.81 8.10 -2.38 -0.02 1.79 16 34 H 0.08 3.40 8.08 -2.38 -0.02 3.38 16 35 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 36 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 37 H 0.08 3.38 7.29 -2.39 -0.02 3.36 16 Total: -1.00 -69.74 314.23 2.77 -66.97 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 1.08 Total: 11.53 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 5.59 Total: 25.02 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -4.23 Total: -95.92 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -1.70 Total: -54.66 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.74 2.77 -66.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348718413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.573 kcal (2) G-P(sol) polarization free energy of solvation -69.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds