Wall clock time and date at job start Tue Mar 31 2020 01:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00202 * 2 1 4 4 H 1.48498 * 109.46758 * 269.99522 * 3 2 1 5 5 H 1.48504 * 109.47084 * 29.99455 * 3 2 1 6 6 H 1.48498 * 109.47188 * 149.99561 * 3 2 1 7 7 C 1.37878 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46665 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46507 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46737 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99835 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00063 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00105 * 180.02562 * 13 12 11 16 16 N 1.46493 * 109.47225 * 179.97438 * 15 13 12 17 17 C 1.34778 * 119.99793 * 179.97438 * 16 15 13 18 18 O 1.21695 * 120.00192 * 359.97438 * 17 16 15 19 19 C 1.46661 * 119.99796 * 179.97438 * 17 16 15 20 20 C 1.36547 * 125.98711 * 179.97438 * 19 17 16 21 21 C 1.40360 * 106.70833 * 180.02562 * 20 19 17 22 22 C 1.35131 * 107.11647 * 359.97438 * 21 20 19 23 23 O 1.33934 * 108.76477 * 0.02562 * 22 21 20 24 24 H 0.97008 * 119.99555 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46948 * 59.99950 * 9 7 2 26 26 H 1.09001 * 109.47103 * 299.99571 * 9 7 2 27 27 H 1.08998 * 109.47117 * 60.00496 * 10 9 7 28 28 H 1.08996 * 109.47028 * 299.99562 * 10 9 7 29 29 H 1.08999 * 109.47291 * 60.00728 * 11 10 9 30 30 H 1.08996 * 109.47354 * 299.99651 * 11 10 9 31 31 H 0.96995 * 119.99777 * 0.02562 * 12 11 10 32 32 H 1.08997 * 109.47342 * 59.99110 * 15 13 12 33 33 H 1.09001 * 109.46775 * 299.99724 * 15 13 12 34 34 H 0.96998 * 120.00266 * 359.97438 * 16 15 13 35 35 H 1.08005 * 126.64485 * 0.02562 * 20 19 17 36 36 H 1.08003 * 126.44294 * 180.02562 * 21 20 19 37 37 H 1.07997 * 125.61851 * 180.26772 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9870 0.0012 12 7 2.4321 -6.1006 0.0006 13 6 1.9828 -7.3713 0.0005 14 8 0.7904 -7.5929 0.0013 15 6 2.9620 -8.5168 0.0004 16 7 2.2295 -9.7854 0.0009 17 6 2.9034 -10.9526 0.0004 18 8 4.1203 -10.9527 -0.0009 19 6 2.1700 -12.2227 0.0015 20 6 2.7256 -13.4700 0.0007 21 6 1.6618 -14.3857 0.0016 22 6 0.5179 -13.6663 0.0035 23 8 0.8283 -12.3634 0.0032 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8532 -5.0451 -0.8886 30 1 0.8538 -5.0445 0.8914 31 1 3.3857 -5.9234 0.0002 32 1 3.5888 -8.4591 0.8903 33 1 3.5887 -8.4590 -0.8896 34 1 1.2595 -9.7854 0.0016 35 1 3.7795 -13.7063 -0.0005 36 1 1.7423 -15.4627 0.0017 37 1 -0.4819 -14.0746 0.0088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351580997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:27 Heat of formation + Delta-G solvation = -71.446377 kcal Electronic energy + Delta-G solvation = -20124.062610 eV Core-core repulsion = 16674.775637 eV Total energy + Delta-G solvation = -3449.286973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.04498 -40.24180 -39.16376 -35.71756 -34.78217 -33.43341 -33.40346 -31.46031 -30.61174 -28.40779 -26.36745 -23.68818 -22.80510 -22.11309 -20.90007 -20.69437 -20.22105 -19.06285 -17.10335 -16.79601 -16.77322 -16.27309 -16.11871 -16.02668 -15.24388 -14.97747 -14.51079 -14.28471 -14.10283 -13.49580 -13.39204 -13.25190 -13.04812 -12.81995 -12.33167 -11.90404 -11.77538 -10.93633 -10.80260 -10.74590 -10.63303 -10.45917 -10.13887 -9.93147 -9.62145 -9.46562 -9.16475 -9.07164 -8.95349 -8.40609 -6.05195 -4.08483 0.68191 1.96378 2.24945 2.48925 2.70319 2.82944 3.28850 3.33085 3.35620 3.38592 4.28883 4.41419 4.50388 4.54737 4.67073 5.03774 5.05798 5.23353 5.30721 5.37113 5.49953 5.59899 5.68782 5.85826 5.91003 6.07316 6.30708 6.42057 6.51988 6.72160 6.93027 7.10977 7.45823 7.59018 7.70750 7.70926 7.93022 8.11113 8.34016 8.98107 9.55991 11.06009 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.059168 B = 0.002150 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.118314 B =13021.035108 C =13463.102530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.718 5.718 13 C 0.503 3.497 14 O -0.541 6.541 15 C 0.098 3.902 16 N -0.706 5.706 17 C 0.606 3.394 18 O -0.522 6.522 19 C -0.079 4.079 20 C -0.118 4.118 21 C -0.228 4.228 22 C -0.003 4.003 23 O -0.161 6.161 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.403 0.597 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.418 0.582 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.061 -27.044 0.012 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.368 5.368 13 C 0.288 3.712 14 O -0.419 6.419 15 C -0.029 4.029 16 N -0.360 5.360 17 C 0.392 3.608 18 O -0.400 6.400 19 C -0.131 4.131 20 C -0.139 4.139 21 C -0.247 4.247 22 C -0.073 4.073 23 O -0.056 6.056 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.237 0.763 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.257 0.743 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.700 -26.752 0.018 27.006 hybrid contribution 0.439 0.831 -0.011 0.941 sum 4.140 -25.920 0.007 26.249 Atomic orbital electron populations 1.69966 1.06065 1.26731 1.50475 1.25037 0.94876 0.99355 0.95236 0.86569 0.79795 0.83367 0.78111 1.20648 1.21194 1.19879 1.21196 0.93012 0.90905 1.51049 0.92600 1.19034 0.93839 0.90852 0.97684 1.21905 0.99821 0.93180 1.01053 1.21725 0.91792 0.84893 1.02243 1.46119 1.11288 1.05558 1.73863 1.20388 0.89454 0.84488 0.76910 1.90713 1.16581 1.84480 1.50129 1.21166 0.94243 0.82179 1.05322 1.45588 1.11946 1.04260 1.74212 1.16472 0.86198 0.81193 0.76908 1.90896 1.11829 1.86380 1.50936 1.21960 0.80730 0.95949 1.14463 1.21992 1.01324 0.90339 1.00240 1.21885 0.91782 1.01346 1.09646 1.24483 1.00905 0.79791 1.02116 1.84108 1.23297 1.27996 1.70212 0.92900 0.96260 0.96242 0.92578 0.92573 0.91503 0.91492 0.76317 0.87843 0.87839 0.74309 0.82106 0.82480 0.77205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.41 16 11 C 0.12 1.90 5.67 -4.04 -0.02 1.88 16 12 N -0.72 -9.15 5.56 -60.29 -0.33 -9.48 16 13 C 0.50 6.56 7.90 -10.99 -0.09 6.48 16 14 O -0.54 -9.02 15.67 5.56 0.09 -8.93 16 15 C 0.10 1.00 6.15 -5.20 -0.03 0.96 16 16 N -0.71 -7.85 5.52 -62.81 -0.35 -8.20 16 17 C 0.61 7.18 7.79 -12.86 -0.10 7.08 16 18 O -0.52 -7.30 16.86 5.19 0.09 -7.21 16 19 C -0.08 -0.83 7.13 -36.79 -0.26 -1.09 16 20 C -0.12 -1.05 10.62 -39.39 -0.42 -1.47 16 21 C -0.23 -1.50 10.87 -39.89 -0.43 -1.94 16 22 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 23 O -0.16 -1.52 10.40 5.00 0.05 -1.46 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.40 3.95 8.47 -40.82 -0.35 3.60 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.42 4.76 7.19 -40.82 -0.29 4.47 16 35 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.16 0.62 8.06 -52.48 -0.42 0.20 16 37 H 0.21 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -33.98 332.20 -6.25 -40.24 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.83 Total: 2.50 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.69 Total: -2.92 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.05 Total: -43.46 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.23 Total: -17.61 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.98 -6.25 -40.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351580997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.210 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds