Wall clock time and date at job start Tue Mar 31 2020 01:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00202 * 2 1 4 4 H 1.48498 * 109.46758 * 269.99522 * 3 2 1 5 5 H 1.48504 * 109.47084 * 29.99455 * 3 2 1 6 6 H 1.48498 * 109.47188 * 149.99561 * 3 2 1 7 7 C 1.37878 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46665 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46507 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46737 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99835 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00063 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00105 * 180.02562 * 13 12 11 16 16 N 1.46493 * 109.47225 * 179.97438 * 15 13 12 17 17 C 1.34778 * 119.99793 * 179.97438 * 16 15 13 18 18 O 1.21695 * 120.00192 * 359.97438 * 17 16 15 19 19 C 1.46661 * 119.99796 * 179.97438 * 17 16 15 20 20 C 1.36547 * 125.98711 * 179.97438 * 19 17 16 21 21 C 1.40360 * 106.70833 * 180.02562 * 20 19 17 22 22 C 1.35131 * 107.11647 * 359.97438 * 21 20 19 23 23 O 1.33934 * 108.76477 * 0.02562 * 22 21 20 24 24 H 0.97008 * 119.99555 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46948 * 59.99950 * 9 7 2 26 26 H 1.09001 * 109.47103 * 299.99571 * 9 7 2 27 27 H 1.08998 * 109.47117 * 60.00496 * 10 9 7 28 28 H 1.08996 * 109.47028 * 299.99562 * 10 9 7 29 29 H 1.08999 * 109.47291 * 60.00728 * 11 10 9 30 30 H 1.08996 * 109.47354 * 299.99651 * 11 10 9 31 31 H 0.96995 * 119.99777 * 0.02562 * 12 11 10 32 32 H 1.08997 * 109.47342 * 59.99110 * 15 13 12 33 33 H 1.09001 * 109.46775 * 299.99724 * 15 13 12 34 34 H 0.96998 * 120.00266 * 359.97438 * 16 15 13 35 35 H 1.08005 * 126.64485 * 0.02562 * 20 19 17 36 36 H 1.08003 * 126.44294 * 180.02562 * 21 20 19 37 37 H 1.07997 * 125.61851 * 180.26772 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9870 0.0012 12 7 2.4321 -6.1006 0.0006 13 6 1.9828 -7.3713 0.0005 14 8 0.7904 -7.5929 0.0013 15 6 2.9620 -8.5168 0.0004 16 7 2.2295 -9.7854 0.0009 17 6 2.9034 -10.9526 0.0004 18 8 4.1203 -10.9527 -0.0009 19 6 2.1700 -12.2227 0.0015 20 6 2.7256 -13.4700 0.0007 21 6 1.6618 -14.3857 0.0016 22 6 0.5179 -13.6663 0.0035 23 8 0.8283 -12.3634 0.0032 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8532 -5.0451 -0.8886 30 1 0.8538 -5.0445 0.8914 31 1 3.3857 -5.9234 0.0002 32 1 3.5888 -8.4591 0.8903 33 1 3.5887 -8.4590 -0.8896 34 1 1.2595 -9.7854 0.0016 35 1 3.7795 -13.7063 -0.0005 36 1 1.7423 -15.4627 0.0017 37 1 -0.4819 -14.0746 0.0088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351580997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:26 Heat of formation + Delta-G solvation = -97.030106 kcal Electronic energy + Delta-G solvation = -20125.172004 eV Core-core repulsion = 16674.775637 eV Total energy + Delta-G solvation = -3450.396367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.65706 -41.25257 -40.17436 -37.10368 -35.74710 -35.23064 -34.03757 -33.14583 -31.38164 -29.56455 -27.90082 -25.06455 -23.93989 -22.70924 -22.33960 -21.57345 -21.39229 -19.88321 -18.57674 -17.88664 -17.58949 -17.51070 -17.02264 -17.01582 -16.54063 -16.21113 -16.13771 -15.33919 -15.28334 -14.44108 -14.18069 -14.12420 -13.93053 -13.92669 -13.76286 -13.55780 -13.36322 -12.75127 -12.55503 -12.38618 -11.67741 -11.67354 -11.61697 -11.26676 -11.05590 -11.01534 -10.55315 -10.50062 -10.16593 -9.67640 -8.19700 -6.30862 -0.01244 1.40627 1.41989 1.43026 1.43682 1.49992 1.54124 1.92929 2.02907 2.35411 2.43257 3.14238 3.52778 3.72580 3.95698 4.10506 4.16089 4.19607 4.28677 4.30292 4.55505 4.61420 4.89757 4.92299 4.94762 4.95755 5.03162 5.17707 5.35847 5.39496 5.52588 5.71381 5.80856 5.84698 6.22147 6.26610 6.42612 6.83769 6.86962 7.08241 7.38759 8.92221 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.059168 B = 0.002150 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.118314 B =13021.035108 C =13463.102530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.130 3.870 12 N -0.706 5.706 13 C 0.507 3.493 14 O -0.579 6.579 15 C 0.105 3.895 16 N -0.707 5.707 17 C 0.607 3.393 18 O -0.552 6.552 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.233 4.233 22 C 0.009 3.991 23 O -0.176 6.176 24 H 0.263 0.737 25 H -0.008 1.008 26 H -0.007 1.007 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.420 0.580 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.416 0.584 35 H 0.165 0.835 36 H 0.186 0.814 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.394 -28.217 0.013 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.141 4.141 11 C 0.006 3.994 12 N -0.358 5.358 13 C 0.293 3.707 14 O -0.460 6.460 15 C -0.021 4.021 16 N -0.360 5.360 17 C 0.395 3.605 18 O -0.432 6.432 19 C -0.167 4.167 20 C -0.139 4.139 21 C -0.252 4.252 22 C -0.061 4.061 23 O -0.072 6.072 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.258 0.742 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.255 0.745 35 H 0.182 0.818 36 H 0.203 0.797 37 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 5.076 -27.931 0.018 28.389 hybrid contribution -0.056 1.086 -0.012 1.088 sum 5.020 -26.845 0.006 27.310 Atomic orbital electron populations 1.70110 1.07895 1.27755 1.51724 1.26024 0.95764 1.03552 0.94865 0.85423 0.78691 0.78360 0.78416 1.19882 1.21107 1.18450 1.21694 0.93778 0.92043 1.50347 0.91512 1.18956 0.94492 0.92979 0.95120 1.21609 0.98454 0.91735 1.02316 1.21282 0.91870 0.85235 1.01028 1.45842 1.11671 1.04652 1.73612 1.20826 0.89330 0.84902 0.75607 1.90703 1.18484 1.85010 1.51770 1.21219 0.93317 0.80476 1.07118 1.45629 1.11876 1.04513 1.74014 1.16630 0.85977 0.81692 0.76228 1.90864 1.12857 1.86890 1.52611 1.21804 0.81456 0.95795 1.17670 1.22289 1.02223 0.90475 0.98917 1.22248 0.90955 1.02540 1.09427 1.25413 1.02706 0.78591 0.99361 1.84099 1.22752 1.29720 1.70639 0.92845 0.98914 0.98895 0.91228 0.91204 0.92868 0.92856 0.74216 0.85950 0.85945 0.74532 0.81778 0.79699 0.73201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.10 -3.77 5.27 30.60 0.16 -3.61 16 11 C 0.13 4.24 5.67 86.38 0.49 4.73 16 12 N -0.71 -17.03 5.56 -463.05 -2.57 -19.61 16 13 C 0.51 12.79 7.90 87.66 0.69 13.48 16 14 O -0.58 -19.39 15.67 -3.03 -0.05 -19.43 16 15 C 0.11 1.99 6.15 85.63 0.53 2.52 16 16 N -0.71 -15.48 5.52 -470.85 -2.60 -18.08 16 17 C 0.61 14.31 7.79 86.44 0.67 14.99 16 18 O -0.55 -15.33 16.86 -4.33 -0.07 -15.40 16 19 C -0.12 -2.39 7.13 24.08 0.17 -2.22 16 20 C -0.12 -2.00 10.62 22.39 0.24 -1.76 16 21 C -0.23 -2.54 10.87 22.07 0.24 -2.30 16 22 C 0.01 0.09 12.08 67.10 0.81 0.90 16 23 O -0.18 -3.16 10.40 -5.01 -0.05 -3.21 16 24 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 25 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.42 7.23 8.47 -92.71 -0.79 6.44 16 32 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.42 9.55 7.19 -92.71 -0.67 8.88 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.19 0.86 8.06 -2.91 -0.02 0.84 16 37 H 0.25 0.15 8.06 -2.91 -0.02 0.13 16 Total: -1.00 -75.01 332.20 1.46 -73.55 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -0.35 Total: 14.29 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 4.85 Total: -1.26 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -4.89 Total: -94.00 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.17 Total: -38.05 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -75.01 1.46 -73.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351580997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.480 kcal (2) G-P(sol) polarization free energy of solvation -75.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds